Wall clock time and date at job start Wed Apr 1 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47483 * 2 1 4 4 C 1.34770 * 120.00297 * 267.05590 * 3 2 1 5 5 O 1.21774 * 120.00036 * 176.20870 * 4 3 2 6 6 C 1.41820 * 119.99774 * 356.20608 * 4 3 2 7 7 C 1.38517 * 126.78530 * 22.11480 * 6 4 3 8 8 N 1.32333 * 108.21416 * 179.97438 * 7 6 4 9 9 C 1.33195 * 109.81171 * 0.02562 * 8 7 6 10 10 C 1.40656 * 131.81493 * 180.02562 * 9 8 7 11 11 C 1.36285 * 119.38364 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.19873 * 179.97438 * 11 10 9 13 13 C 1.40173 * 119.60760 * 359.97438 * 11 10 9 14 14 C 1.35261 * 120.12770 * 359.97438 * 13 11 10 15 15 N 1.35957 * 120.63786 * 359.74179 * 14 13 11 16 16 C 1.46509 * 119.99898 * 87.04998 * 3 2 1 17 17 H 1.09001 * 110.91092 * 356.10598 * 16 3 2 18 18 C 1.55150 * 111.00192 * 120.00004 * 16 3 2 19 19 C 1.54324 * 102.94234 * 153.57719 * 18 16 3 20 20 N 1.47026 * 107.26987 * 337.80828 * 19 18 16 21 21 C 1.36936 * 125.64732 * 178.90284 * 20 19 18 22 22 H 1.08005 * 119.99902 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00357 * 0.02562 * 21 20 19 24 24 N 1.31623 * 119.99726 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00133 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47158 * 60.00779 * 25 23 21 27 27 H 1.48505 * 109.47213 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47323 * 300.00517 * 25 23 21 29 29 C 1.47422 * 108.70005 * 358.94190 * 20 19 18 30 30 H 1.09003 * 109.46519 * 60.00007 * 1 2 3 31 31 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47007 * 300.00050 * 1 2 3 33 33 H 1.09005 * 109.47480 * 239.99870 * 2 1 3 34 34 H 1.09007 * 109.46994 * 120.00077 * 2 1 3 35 35 H 1.07997 * 125.89766 * 359.97438 * 7 6 4 36 36 H 1.07995 * 120.30837 * 359.97438 * 10 9 8 37 37 H 1.09002 * 109.47255 * 89.99497 * 12 11 10 38 38 H 1.08998 * 109.47261 * 209.99609 * 12 11 10 39 39 H 1.08996 * 109.46833 * 329.99823 * 12 11 10 40 40 H 1.08006 * 119.93680 * 180.02562 * 13 11 10 41 41 H 1.08005 * 119.68329 * 179.97438 * 14 13 11 42 42 H 1.09006 * 110.72217 * 35.21961 * 18 16 3 43 43 H 1.08999 * 110.72548 * 271.94089 * 18 16 3 44 44 H 1.09003 * 109.88088 * 97.22638 * 19 18 16 45 45 H 1.08999 * 109.88625 * 218.24041 * 19 18 16 46 46 H 0.97000 * 119.99704 * 179.97438 * 24 23 21 47 47 H 1.09002 * 110.36590 * 142.96691 * 29 20 19 48 48 H 1.09001 * 110.36546 * 265.17413 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2996 1.9966 -1.1656 5 8 2.6393 3.1660 -1.1702 6 6 2.1999 1.2822 -2.3866 7 6 1.4526 0.1396 -2.6205 8 7 1.6257 -0.2166 -3.8832 9 6 2.4509 0.6387 -4.4845 10 6 2.9433 0.6988 -5.8007 11 6 3.7922 1.7055 -6.1518 12 6 4.3313 1.7871 -7.5567 13 6 4.1609 2.6646 -5.1984 14 6 3.6759 2.5903 -3.9379 15 7 2.8241 1.5926 -3.5810 16 6 2.2011 2.0936 1.2671 17 1 1.8665 1.4850 2.1073 18 6 3.6781 2.5314 1.4510 19 6 3.5611 3.7643 2.3719 20 7 2.1954 4.2892 2.2271 21 6 1.6805 5.3688 2.8937 22 1 0.6604 5.6764 2.7170 23 6 2.4697 6.0680 3.7966 24 7 3.7130 5.6935 4.0116 25 14 1.7675 7.5412 4.7054 26 1 0.5949 7.1136 5.5101 27 1 2.8046 8.1088 5.6042 28 1 1.3450 8.5727 3.7244 29 6 1.4719 3.4601 1.2460 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8352 -0.3723 -1.8973 36 1 2.6514 -0.0460 -6.5263 37 1 3.6589 2.3876 -8.1695 38 1 5.3184 2.2490 -7.5408 39 1 4.4063 0.7838 -7.9759 40 1 4.8330 3.4649 -5.4709 41 1 3.9650 3.3329 -3.2089 42 1 4.1211 2.8060 0.4936 43 1 4.2568 1.7435 1.9331 44 1 3.7381 3.4719 3.4069 45 1 4.2854 4.5214 2.0716 46 1 4.2646 6.1823 4.6423 47 1 0.4309 3.3392 1.5458 48 1 1.5307 3.9080 0.2541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033849502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:07 Heat of formation + Delta-G solvation = 92.955180 kcal Electronic energy + Delta-G solvation = -30501.598524 eV Core-core repulsion = 26559.124202 eV Total energy + Delta-G solvation = -3942.474322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.10352 -41.35401 -38.97639 -38.44283 -37.05194 -35.19283 -34.47182 -32.25057 -31.59528 -31.14059 -30.67156 -29.23380 -27.93220 -26.37047 -24.88110 -24.77755 -23.65805 -22.98391 -22.15594 -22.04428 -20.56181 -19.00822 -18.55098 -18.14153 -17.75260 -17.33745 -17.06342 -16.66005 -16.27688 -15.97653 -15.92177 -15.63856 -15.45708 -15.35217 -14.67805 -14.27542 -14.22413 -14.17473 -13.72398 -13.58646 -13.45893 -13.43152 -12.99234 -12.97950 -12.94103 -12.79718 -12.68724 -12.63749 -12.28803 -12.12904 -12.08762 -12.07080 -11.85985 -11.63597 -11.51589 -11.44639 -10.74561 -10.64428 -9.97766 -9.76140 -8.92216 -8.86084 -7.85878 -5.21628 -0.36998 -0.25410 1.11974 1.27139 1.42644 1.47440 1.53593 2.06812 2.16692 2.38276 2.49605 3.03927 3.30812 3.37017 3.54169 3.68787 3.72198 3.78005 3.87559 3.99510 4.01910 4.04993 4.15077 4.22154 4.32956 4.36264 4.50787 4.60184 4.63831 4.70141 4.74496 4.84305 4.85920 4.89609 4.92964 4.94991 5.00654 5.16075 5.18914 5.22262 5.34228 5.40050 5.40611 5.50091 5.61764 5.66652 5.72869 5.84264 6.17168 6.35561 6.54390 7.07279 7.11118 7.74886 8.41075 9.24548 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002916 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.797025 B = 9599.583457 C =10746.029035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 N -0.585 5.585 4 C 0.587 3.413 5 O -0.577 6.577 6 C -0.173 4.173 7 C 0.095 3.905 8 N -0.519 5.519 9 C 0.232 3.768 10 C -0.107 4.107 11 C -0.040 4.040 12 C -0.110 4.110 13 C -0.123 4.123 14 C 0.045 3.955 15 N -0.333 5.333 16 C 0.156 3.844 17 H 0.120 0.880 18 C -0.136 4.136 19 C 0.197 3.803 20 N -0.622 5.622 21 C -0.244 4.244 22 H 0.078 0.922 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.272 1.272 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.120 3.880 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.234 0.766 36 H 0.179 0.821 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.186 0.814 41 H 0.156 0.844 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.021 0.979 45 H -0.005 1.005 46 H 0.248 0.752 47 H 0.036 0.964 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -16.947 -22.084 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.048 4.048 3 N -0.316 5.316 4 C 0.379 3.621 5 O -0.459 6.459 6 C -0.286 4.286 7 C -0.065 4.065 8 N -0.238 5.238 9 C -0.007 4.007 10 C -0.126 4.126 11 C -0.047 4.047 12 C -0.167 4.167 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.002 5.002 16 C 0.052 3.948 17 H 0.138 0.862 18 C -0.175 4.175 19 C 0.072 3.928 20 N -0.349 5.349 21 C -0.373 4.373 22 H 0.096 0.904 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.197 1.197 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.006 4.006 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.249 0.751 36 H 0.196 0.804 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.204 0.796 41 H 0.173 0.827 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.013 0.987 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.739 -16.845 -22.248 27.916 hybrid contribution 0.209 2.110 1.488 2.590 sum -0.530 -14.735 -20.760 25.464 Atomic orbital electron populations 1.22357 0.94349 1.04572 1.02536 1.22575 0.95676 0.80490 1.06042 1.47614 1.64937 1.15045 1.04009 1.15774 0.77707 0.85515 0.83137 1.90843 1.50004 1.17434 1.87601 1.19826 1.14288 1.06258 0.88263 1.24527 0.96863 0.91328 0.93736 1.70570 1.18872 1.26961 1.07444 1.21690 0.97945 0.87828 0.93248 1.20567 0.99269 1.01992 0.90811 1.20334 0.93971 0.91942 0.98441 1.20922 1.02185 1.04860 0.88684 1.21339 1.01512 1.01560 0.89823 1.22135 0.93729 0.92326 0.99800 1.42525 1.28771 1.19236 1.09674 1.22077 0.95122 0.92593 0.85016 0.86248 1.23008 0.96833 0.98138 0.99559 1.20748 0.85683 0.91139 0.95272 1.44608 1.10286 1.32619 1.47353 1.19404 0.96764 1.04321 1.16804 0.90388 1.25698 0.96578 1.02611 1.01122 1.70193 1.08015 1.42775 1.39131 0.85094 0.77132 0.78771 0.77970 1.19746 1.21674 1.20763 1.22040 0.94390 0.91054 0.93096 0.92827 0.87476 0.92208 0.87591 0.87595 0.75055 0.80401 0.88972 0.89257 0.89254 0.79642 0.82667 0.92790 0.89522 0.96089 0.98652 0.94325 0.94566 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.00 71.98 0.65 -2.26 16 2 C 0.07 1.40 5.56 86.38 0.48 1.88 16 3 N -0.59 -17.67 2.56 -800.38 -2.05 -19.72 16 4 C 0.59 20.74 6.72 85.13 0.57 21.32 16 5 O -0.58 -25.58 11.77 -4.59 -0.05 -25.63 16 6 C -0.17 -5.26 6.51 39.08 0.25 -5.01 16 7 C 0.10 2.37 9.00 84.68 0.76 3.13 16 8 N -0.52 -13.67 11.25 -192.74 -2.17 -15.83 16 9 C 0.23 5.86 7.77 134.01 1.04 6.90 16 10 C -0.11 -1.81 9.75 22.40 0.22 -1.59 16 11 C -0.04 -0.53 5.88 -19.85 -0.12 -0.65 16 12 C -0.11 -0.55 10.02 71.24 0.71 0.17 16 13 C -0.12 -1.98 9.68 22.05 0.21 -1.77 16 14 C 0.04 1.13 10.54 83.37 0.88 2.00 16 15 N -0.33 -9.51 2.96 -344.20 -1.02 -10.53 16 16 C 0.16 5.74 3.54 46.38 0.16 5.90 16 17 H 0.12 3.83 7.95 -2.39 -0.02 3.81 16 18 C -0.14 -5.70 6.34 31.78 0.20 -5.49 16 19 C 0.20 10.69 5.37 86.73 0.47 11.16 16 20 N -0.62 -35.20 3.39 -692.00 -2.35 -37.55 16 21 C -0.24 -14.75 10.28 84.03 0.86 -13.89 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 24 N -0.95 -60.18 10.31 21.65 0.22 -59.96 16 25 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 29 C 0.12 5.64 6.57 86.85 0.57 6.21 16 30 H 0.05 0.98 6.88 -2.39 -0.02 0.97 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 1.83 4.34 -2.38 -0.01 1.82 16 34 H 0.11 1.60 8.05 -2.38 -0.02 1.58 16 35 H 0.23 4.20 3.46 -2.91 -0.01 4.19 16 36 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 39 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 40 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.16 4.50 7.09 -2.91 -0.02 4.48 16 42 H 0.05 2.42 6.38 -2.38 -0.02 2.40 16 43 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 44 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 45 H 0.00 -0.30 7.50 -2.39 -0.02 -0.32 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.03 1.68 5.40 -2.39 -0.01 1.66 16 Total: -1.00 -84.85 374.72 3.99 -80.86 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.99 Total: 13.91 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 8.40 Total: 24.42 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -7.36 Total: -143.58 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -84.85 3.99 -80.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033849502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.814 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds