Wall clock time and date at job start Wed Apr 1 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46502 * 109.47154 * 2 1 4 4 C 1.34779 * 120.00247 * 84.87111 * 3 2 1 5 5 O 1.21594 * 119.99922 * 185.43109 * 4 3 2 6 6 C 1.47527 * 119.99812 * 5.43059 * 4 3 2 7 7 C 1.46507 * 120.16354 * 55.38435 * 6 4 3 8 8 C 1.35534 * 119.04471 * 180.22768 * 7 6 4 9 9 C 1.41233 * 119.42219 * 359.51309 * 8 7 6 10 10 C 1.37913 * 132.96934 * 180.20493 * 9 8 7 11 11 N 1.33444 * 107.66013 * 180.26378 * 10 9 8 12 12 C 1.30747 * 109.93835 * 359.97438 * 11 10 9 13 13 N 1.35920 * 109.20460 * 359.97438 * 12 11 10 14 14 C 1.36318 * 120.16509 * 235.36073 * 6 4 3 15 15 C 1.50698 * 119.75009 * 0.04808 * 14 6 4 16 16 C 1.46500 * 119.99807 * 264.87488 * 3 2 1 17 17 H 1.09001 * 110.64045 * 1.68482 * 16 3 2 18 18 C 1.55153 * 110.72195 * 125.02318 * 16 3 2 19 19 C 1.54910 * 101.58079 * 153.86304 * 18 16 3 20 20 N 1.47421 * 104.83464 * 322.98949 * 19 18 16 21 21 C 1.36932 * 125.65385 * 204.15907 * 20 19 18 22 22 H 1.07999 * 120.00588 * 179.97438 * 21 20 19 23 23 C 1.38818 * 119.99482 * 359.96835 * 21 20 19 24 24 N 1.31616 * 120.00370 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99818 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47290 * 89.99521 * 25 23 21 27 27 H 1.48503 * 109.46884 * 209.99680 * 25 23 21 28 28 H 1.48500 * 109.46747 * 329.99588 * 25 23 21 29 29 C 1.47024 * 108.70131 * 24.13156 * 20 19 18 30 30 H 1.09007 * 109.46935 * 300.00171 * 1 2 3 31 31 H 1.09000 * 109.47008 * 60.00199 * 1 2 3 32 32 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47062 * 239.99304 * 2 1 3 34 34 H 1.09000 * 109.47008 * 119.99801 * 2 1 3 35 35 H 1.07999 * 120.47902 * 359.94994 * 7 6 4 36 36 H 1.07998 * 120.28734 * 179.74565 * 8 7 6 37 37 H 1.08002 * 126.16658 * 0.25989 * 10 9 8 38 38 H 1.07993 * 125.39734 * 180.02562 * 12 11 10 39 39 H 1.08990 * 109.47461 * 94.86267 * 15 14 6 40 40 H 1.09001 * 109.46944 * 214.86220 * 15 14 6 41 41 H 1.09002 * 109.46681 * 334.85820 * 15 14 6 42 42 H 1.09004 * 111.00604 * 271.93680 * 18 16 3 43 43 H 1.09001 * 111.00457 * 35.79206 * 18 16 3 44 44 H 1.09004 * 110.36357 * 204.15144 * 19 18 16 45 45 H 1.08998 * 110.36581 * 81.83145 * 19 18 16 46 46 H 0.96998 * 120.00508 * 180.02562 * 24 23 21 47 47 H 1.09001 * 109.88484 * 239.52296 * 29 20 19 48 48 H 1.08995 * 109.88706 * 118.35667 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1447 2.0514 1.1625 5 8 2.4549 3.2271 1.1559 6 6 1.9066 1.3585 2.4430 7 6 2.6500 0.1390 2.7695 8 6 2.4099 -0.4818 3.9501 9 6 1.4594 0.0645 4.8405 10 6 1.0072 -0.3207 6.0851 11 7 0.0892 0.5660 6.4746 12 6 -0.0634 1.4829 5.5551 13 7 0.7699 1.2160 4.5150 14 6 0.9941 1.8500 3.3284 15 6 0.2280 3.1039 2.9942 16 6 2.3694 2.0340 -1.2637 17 1 2.1819 1.3675 -2.1055 18 6 1.5904 3.3656 -1.4287 19 6 2.5373 4.1670 -2.3565 20 7 3.8958 3.8062 -1.9118 21 6 5.0210 4.5668 -2.0862 22 1 5.9741 4.2127 -1.7220 23 6 4.9366 5.7931 -2.7312 24 7 3.7753 6.2245 -3.1756 25 14 6.4715 6.8312 -2.9684 26 1 7.1143 6.4765 -4.2592 27 1 6.0999 8.2689 -2.9790 28 1 7.4203 6.5732 -1.8556 29 6 3.8423 2.4947 -1.2496 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.3756 -0.2620 2.0774 36 1 2.9435 -1.3842 4.2094 37 1 1.3366 -1.1844 6.6438 38 1 -0.7430 2.3201 5.6132 39 1 -0.7303 2.8365 2.5491 40 1 0.0580 3.6793 3.9042 41 1 0.8024 3.7030 2.2876 42 1 0.6254 3.1971 -1.9067 43 1 1.4669 3.8675 -0.4690 44 1 2.3703 5.2374 -2.2356 45 1 2.3878 3.8738 -3.3956 46 1 3.7164 7.0813 -3.6266 47 1 4.1928 2.5840 -0.2213 48 1 4.4596 1.7794 -1.7930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033876402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:44 Heat of formation + Delta-G solvation = 100.478705 kcal Electronic energy + Delta-G solvation = -30887.066182 eV Core-core repulsion = 26944.918105 eV Total energy + Delta-G solvation = -3942.148077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.99781 -40.40021 -37.67683 -36.54665 -35.64568 -34.20307 -32.50570 -31.60802 -30.39364 -29.30331 -28.89982 -27.82325 -26.85844 -24.73459 -24.04496 -23.31691 -22.79447 -21.35738 -21.01594 -20.14583 -19.12817 -18.07045 -17.18673 -16.93505 -16.35930 -16.27301 -15.77440 -15.56602 -14.91587 -14.57997 -14.38763 -14.21012 -13.94153 -13.89565 -13.78208 -13.59252 -13.31369 -13.18035 -13.05515 -12.51714 -12.24117 -12.10312 -11.88590 -11.73766 -11.68714 -11.48838 -11.23182 -10.99951 -10.88269 -10.79321 -10.77940 -10.57237 -10.52581 -10.06817 -9.82147 -9.55227 -9.39562 -9.18482 -8.58882 -8.41324 -7.75934 -6.74993 -5.58274 -2.98858 0.51148 0.81135 2.17800 2.58587 2.86419 3.01477 3.19604 3.44074 3.49027 3.51370 4.03197 4.24768 4.32091 4.45067 4.54142 4.56189 4.68489 4.79050 5.01064 5.06262 5.15362 5.18807 5.24033 5.27482 5.39997 5.47872 5.50208 5.52331 5.59518 5.62299 5.71697 5.76932 5.83796 5.86443 5.88144 6.00339 6.23685 6.25622 6.32024 6.51756 6.55535 6.62148 6.73838 6.87485 7.12978 7.45485 7.59837 7.60806 7.69521 7.92461 8.26519 8.43908 9.28887 9.89948 10.54483 11.45686 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002965 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.256114 B = 9441.218802 C = 9893.475584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.594 5.594 4 C 0.566 3.434 5 O -0.495 6.495 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.086 4.086 9 C 0.009 3.991 10 C -0.023 4.023 11 N -0.454 5.454 12 C 0.148 3.852 13 N -0.370 5.370 14 C 0.140 3.860 15 C -0.138 4.138 16 C 0.134 3.866 17 H 0.091 0.909 18 C -0.158 4.158 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.215 4.215 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.134 3.866 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.181 0.819 38 H 0.211 0.789 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.009 0.991 46 H 0.251 0.749 47 H 0.032 0.968 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 -16.430 12.201 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.326 5.326 4 C 0.352 3.648 5 O -0.369 6.369 6 C -0.149 4.149 7 C -0.114 4.114 8 C -0.105 4.105 9 C -0.100 4.100 10 C -0.176 4.176 11 N -0.167 5.167 12 C -0.127 4.127 13 N -0.042 5.042 14 C 0.036 3.964 15 C -0.195 4.195 16 C 0.031 3.969 17 H 0.109 0.891 18 C -0.197 4.197 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.344 4.344 22 H 0.093 0.907 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.007 3.993 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.198 0.802 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.027 0.973 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.950 -15.502 12.864 22.467 hybrid contribution 1.208 0.315 -0.895 1.536 sum -8.741 -15.186 11.969 21.220 Atomic orbital electron populations 1.22183 0.95920 1.02001 1.02510 1.21766 0.94598 0.82790 1.03444 1.47928 1.64616 1.13785 1.06302 1.17659 0.78143 0.86326 0.82668 1.90901 1.45111 1.14589 1.86326 1.20364 0.99911 0.98138 0.96441 1.22035 0.99109 0.93087 0.97139 1.20379 0.96913 1.00762 0.92483 1.19730 1.00542 0.90938 0.98755 1.22543 0.99612 1.02088 0.93401 1.69956 1.16659 1.03201 1.26885 1.25075 1.00344 1.03425 0.83830 1.42907 1.28495 1.19389 1.13454 1.20135 0.97275 0.95154 0.83787 1.21277 1.00681 0.92801 1.04700 1.22292 0.96978 0.94672 0.82925 0.89117 1.23497 0.97757 0.95580 1.02894 1.21848 0.81588 1.01179 0.92106 1.44288 1.05093 1.16228 1.66552 1.19044 0.86371 0.98344 1.30640 0.90699 1.24756 0.97148 0.97842 1.00987 1.69789 1.22002 1.21001 1.44421 0.86083 0.81990 0.79730 0.77780 1.21739 1.21690 1.20764 1.21470 0.92247 0.88887 0.96702 0.92960 0.91868 0.91692 0.89881 0.90141 0.83777 0.83180 0.80233 0.77257 0.89670 0.90176 0.86494 0.92964 0.89512 0.87526 0.97283 0.93850 0.95024 0.96432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.20 37.16 0.38 -1.10 16 2 C 0.10 0.93 5.91 -4.04 -0.02 0.91 16 3 N -0.59 -8.19 2.55 -165.24 -0.42 -8.61 16 4 C 0.57 8.67 5.48 -12.47 -0.07 8.61 16 5 O -0.49 -9.80 11.44 5.28 0.06 -9.73 16 6 C -0.14 -1.78 4.91 -103.47 -0.51 -2.29 16 7 C -0.09 -0.94 7.87 -37.22 -0.29 -1.23 16 8 C -0.09 -0.77 10.09 -39.41 -0.40 -1.17 16 9 C 0.01 0.10 6.78 -84.02 -0.57 -0.47 16 10 C -0.02 -0.25 12.00 -16.97 -0.20 -0.45 16 11 N -0.45 -5.46 11.18 -13.78 -0.15 -5.61 16 12 C 0.15 1.58 12.13 -89.36 -1.08 0.50 16 13 N -0.37 -4.22 2.94 -57.75 -0.17 -4.39 16 14 C 0.14 1.66 6.82 -81.26 -0.55 1.10 16 15 C -0.14 -1.47 9.45 36.00 0.34 -1.13 16 16 C 0.13 2.29 3.44 -66.10 -0.23 2.06 16 17 H 0.09 1.37 7.82 -51.93 -0.41 0.96 16 18 C -0.16 -3.08 6.39 -24.58 -0.16 -3.24 16 19 C 0.16 3.92 5.89 -2.53 -0.01 3.90 16 20 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 21 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -27.46 10.09 55.49 0.56 -26.90 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.13 2.88 6.52 -3.06 -0.02 2.86 16 30 H 0.05 0.50 8.04 -51.92 -0.42 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.69 7.86 -51.93 -0.41 0.29 16 34 H 0.08 0.67 4.55 -51.93 -0.24 0.44 16 35 H 0.14 1.22 7.47 -52.49 -0.39 0.83 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.21 1.52 7.86 -52.49 -0.41 1.11 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 41 H 0.12 1.60 5.43 -51.93 -0.28 1.32 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.83 5.62 -51.93 -0.29 1.54 16 44 H 0.11 3.02 5.87 -51.93 -0.31 2.71 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.03 0.73 6.44 -51.93 -0.33 0.40 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.97 377.86 -10.50 -45.47 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.81 Total: 0.68 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -3.65 Total: 2.04 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.76 Total: -61.79 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.73 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.97 -10.50 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033876402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.947 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds