Wall clock time and date at job start Wed Apr 1 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46727 * 2 1 4 4 C 1.34784 * 120.00217 * 99.20740 * 3 2 1 5 5 O 1.21572 * 119.99686 * 187.49779 * 4 3 2 6 6 C 1.47675 * 119.99507 * 7.50073 * 4 3 2 7 7 C 1.40134 * 119.90795 * 329.19914 * 6 4 3 8 8 C 1.36426 * 120.45992 * 180.02562 * 7 6 4 9 9 C 1.39072 * 120.15078 * 359.96661 * 8 7 6 10 10 C 1.40686 * 120.14137 * 0.03684 * 9 8 7 11 11 C 1.39126 * 119.90089 * 149.23105 * 6 4 3 12 12 N 1.35866 * 106.93098 * 179.97438 * 10 9 8 13 13 C 1.30065 * 109.56369 * 359.74600 * 12 10 9 14 14 N 1.36092 * 110.12403 * 0.41940 * 13 12 10 15 15 C 1.46504 * 126.30022 * 179.85031 * 14 13 12 16 16 C 1.46503 * 120.00026 * 279.20294 * 3 2 1 17 17 H 1.09001 * 110.88357 * 19.23855 * 16 3 2 18 18 C 1.55156 * 111.00351 * 255.35947 * 16 3 2 19 19 C 1.54330 * 102.94424 * 277.42738 * 18 16 3 20 20 N 1.47019 * 107.26640 * 337.80840 * 19 18 16 21 21 C 1.36945 * 125.64712 * 178.98984 * 20 19 18 22 22 H 1.07997 * 120.00074 * 179.97438 * 21 20 19 23 23 C 1.38806 * 119.99693 * 359.97259 * 21 20 19 24 24 N 1.31615 * 120.00417 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47244 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47464 * 119.99922 * 25 23 21 28 28 H 1.48502 * 109.46986 * 239.99826 * 25 23 21 29 29 C 1.47428 * 108.70466 * 358.93732 * 20 19 18 30 30 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47203 * 300.00278 * 1 2 3 32 32 H 1.09000 * 109.46741 * 60.00380 * 1 2 3 33 33 H 1.08996 * 109.47203 * 239.99722 * 2 1 3 34 34 H 1.09000 * 109.46741 * 119.99620 * 2 1 3 35 35 H 1.08003 * 119.77003 * 0.05606 * 7 6 4 36 36 H 1.08008 * 119.92739 * 180.02562 * 8 7 6 37 37 H 1.08002 * 120.24531 * 359.97438 * 11 6 4 38 38 H 1.08001 * 124.93570 * 180.24641 * 13 12 10 39 39 H 1.08999 * 109.46912 * 269.68236 * 15 14 13 40 40 H 1.09000 * 109.46678 * 149.68690 * 15 14 13 41 41 H 1.09002 * 109.47317 * 29.68617 * 15 14 13 42 42 H 1.09003 * 110.72361 * 35.78933 * 18 16 3 43 43 H 1.09003 * 110.72125 * 159.06510 * 18 16 3 44 44 H 1.08993 * 109.88333 * 97.22496 * 19 18 16 45 45 H 1.08998 * 109.88048 * 218.39046 * 19 18 16 46 46 H 0.97001 * 120.00642 * 179.97438 * 24 23 21 47 47 H 1.09000 * 110.37034 * 265.28943 * 29 20 19 48 48 H 1.09005 * 110.36088 * 142.96900 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4190 1.9544 1.1522 5 8 2.6943 3.1382 1.1785 6 6 2.5235 1.1443 2.3825 7 6 1.6662 0.0527 2.5752 8 6 1.7527 -0.7031 3.7077 9 6 2.6957 -0.3954 4.6825 10 6 3.5642 0.6971 4.5054 11 6 3.4725 1.4675 3.3472 12 7 4.3613 0.7511 5.6043 13 6 4.0412 -0.2083 6.4221 14 7 3.0248 -0.9482 5.9010 15 6 2.3927 -2.1139 6.5238 16 6 2.0711 2.1395 -1.2524 17 1 1.4228 1.6915 -2.0055 18 6 3.5287 2.2555 -1.7713 19 6 4.0906 3.4429 -0.9613 20 7 2.9438 4.2434 -0.5079 21 6 3.0142 5.3754 0.2596 22 1 2.1097 5.8942 0.5409 23 6 4.2481 5.8560 0.6758 24 7 5.3503 5.2234 0.3335 25 14 4.3441 7.3997 1.7232 26 1 2.9741 7.9174 1.9687 27 1 4.9921 7.0785 3.0202 28 1 5.1426 8.4309 1.0130 29 6 1.7055 3.6263 -1.0172 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.9323 -0.1924 1.8217 36 1 1.0879 -1.5428 3.8472 37 1 4.1336 2.3087 3.1996 38 1 4.5151 -0.3927 7.3749 39 1 2.9157 -3.0190 6.2151 40 1 1.3501 -2.1722 6.2111 41 1 2.4419 -2.0177 7.6085 42 1 4.0877 1.3443 -1.5580 43 1 3.5418 2.4762 -2.8386 44 1 4.6484 3.0737 -0.1007 45 1 4.7390 4.0492 -1.5937 46 1 6.2126 5.5594 0.6240 47 1 1.4051 4.0958 -1.9539 48 1 0.9088 3.7087 -0.2779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033876963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:33 Heat of formation + Delta-G solvation = 157.090540 kcal Electronic energy + Delta-G solvation = -31456.046846 eV Core-core repulsion = 27516.353642 eV Total energy + Delta-G solvation = -3939.693204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13502 -40.00527 -37.41274 -35.70828 -35.26132 -34.28859 -32.16969 -30.53728 -30.00829 -29.34590 -28.69578 -27.34722 -26.87409 -24.45866 -23.59145 -23.17876 -22.24979 -20.83348 -20.64929 -19.72582 -18.44639 -17.62358 -17.13919 -16.57196 -16.27853 -15.91534 -15.27938 -15.02682 -14.55083 -14.42227 -14.24998 -13.94453 -13.58338 -13.49770 -13.46530 -13.35090 -13.09414 -12.96522 -12.29714 -12.15700 -11.93570 -11.76727 -11.64364 -11.52709 -11.41146 -11.30165 -10.68000 -10.62007 -10.57100 -10.54353 -10.38490 -9.90828 -9.87053 -9.83266 -9.62506 -9.32348 -8.67811 -8.24153 -8.11319 -8.00716 -7.79370 -6.14384 -5.31209 -2.53853 1.04868 1.33433 2.49736 2.76956 3.52357 3.57718 3.63893 3.68699 3.70851 4.22337 4.33856 4.39938 4.47307 4.78405 4.83840 4.90150 4.94836 5.01060 5.07974 5.25026 5.40543 5.43746 5.46527 5.50899 5.57713 5.67813 5.76408 5.80790 5.82806 5.87168 6.01251 6.09453 6.15935 6.23983 6.34373 6.39473 6.59016 6.63793 6.64418 6.71570 6.74793 6.86821 6.92199 7.06312 7.42910 7.86867 7.87728 7.93600 8.14253 8.18684 8.63885 9.27780 9.61133 10.22878 10.88901 11.82594 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.004524 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.711679 B = 6187.625923 C = 8189.668857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 N -0.606 5.606 4 C 0.506 3.494 5 O -0.402 6.402 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.127 4.127 9 C 0.056 3.944 10 C 0.037 3.963 11 C 0.000 4.000 12 N -0.484 5.484 13 C 0.248 3.752 14 N -0.500 5.500 15 C 0.082 3.918 16 C 0.134 3.866 17 H 0.079 0.921 18 C -0.162 4.162 19 C 0.186 3.814 20 N -0.560 5.560 21 C -0.172 4.172 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.927 5.927 25 Si 0.899 3.101 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.297 1.297 29 C 0.136 3.864 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.212 0.788 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.035 0.965 46 H 0.243 0.757 47 H 0.021 0.979 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -21.473 6.776 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.047 4.047 3 N -0.344 5.344 4 C 0.291 3.709 5 O -0.267 6.267 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.149 4.149 9 C -0.053 4.053 10 C -0.080 4.080 11 C -0.020 4.020 12 N -0.202 5.202 13 C -0.038 4.038 14 N -0.192 5.192 15 C -0.061 4.061 16 C 0.029 3.971 17 H 0.097 0.903 18 C -0.201 4.201 19 C 0.061 3.939 20 N -0.285 5.285 21 C -0.301 4.301 22 H 0.086 0.914 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.225 1.225 29 C 0.009 3.991 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.179 0.821 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.228 0.772 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.836 -20.095 7.087 23.068 hybrid contribution -0.456 -0.207 0.788 0.934 sum -9.292 -20.302 7.875 23.676 Atomic orbital electron populations 1.22311 0.96695 1.01708 1.02904 1.22268 0.93749 0.84730 1.03927 1.47627 1.66802 1.12696 1.07254 1.18516 0.80409 0.89088 0.82926 1.91663 1.41643 1.11552 1.81876 1.20045 0.98600 0.97481 0.97115 1.21801 0.99915 0.93822 0.96825 1.19528 0.99348 1.02705 0.93273 1.19025 1.00565 0.97262 0.88489 1.18921 0.96438 0.96998 0.95653 1.20500 0.96060 0.96865 0.88579 1.70488 1.25736 1.21335 1.02629 1.25328 0.89315 0.89163 0.99988 1.45238 1.31172 1.26599 1.16191 1.21928 0.98914 0.86318 0.98897 1.22238 0.96870 0.93525 0.84445 0.90333 1.23385 0.96050 1.00892 0.99784 1.21039 0.89492 0.88021 0.95305 1.44150 0.99064 1.27381 1.57900 1.18824 0.92137 0.97274 1.21915 0.91438 1.24546 0.95602 0.99061 1.01602 1.69943 0.96463 1.40419 1.50984 0.86198 0.76890 0.83327 0.80405 1.21044 1.22277 1.22520 1.21691 0.91840 0.89353 0.96246 0.91911 0.91970 0.91832 0.91515 0.87849 0.82134 0.86214 0.83791 0.77176 0.90886 0.89941 0.89502 0.92431 0.92013 0.93742 0.94698 0.94623 0.96138 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 2 C 0.08 0.90 5.57 -4.04 -0.02 0.88 16 3 N -0.61 -10.14 2.56 -164.84 -0.42 -10.56 16 4 C 0.51 10.30 6.77 -12.40 -0.08 10.21 16 5 O -0.40 -10.32 9.01 5.30 0.05 -10.27 16 6 C -0.13 -2.24 5.58 -105.00 -0.59 -2.83 16 7 C -0.10 -1.40 7.41 -39.52 -0.29 -1.69 16 8 C -0.13 -1.53 9.97 -39.93 -0.40 -1.93 16 9 C 0.06 0.78 6.87 -83.96 -0.58 0.20 16 10 C 0.04 0.65 7.22 -84.72 -0.61 0.04 16 11 C 0.00 0.00 9.64 -38.82 -0.37 -0.37 16 12 N -0.48 -8.11 11.28 -12.06 -0.14 -8.24 16 13 C 0.25 2.85 12.50 -89.77 -1.12 1.73 16 14 N -0.50 -5.29 3.20 -123.13 -0.39 -5.68 16 15 C 0.08 0.42 11.17 59.85 0.67 1.09 16 16 C 0.13 2.36 3.74 -65.78 -0.25 2.12 16 17 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 18 C -0.16 -3.15 6.61 -24.89 -0.16 -3.32 16 19 C 0.19 4.81 4.34 -3.06 -0.01 4.80 16 20 N -0.56 -14.97 1.71 -170.08 -0.29 -15.27 16 21 C -0.17 -5.14 8.38 -15.06 -0.13 -5.27 16 22 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 24 N -0.93 -29.29 10.31 55.49 0.57 -28.72 16 25 Si 0.90 24.35 29.55 -169.99 -5.02 19.33 16 26 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 28 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 29 C 0.14 2.96 5.99 -2.53 -0.02 2.95 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.65 7.13 -51.93 -0.37 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.10 1.18 3.91 -52.82 -0.21 0.97 16 35 H 0.16 1.76 2.68 -52.48 -0.14 1.62 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.14 3.27 7.92 -52.49 -0.42 2.85 16 38 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 1.31 6.68 -51.93 -0.35 0.96 16 45 H 0.03 1.00 7.51 -51.93 -0.39 0.61 16 46 H 0.24 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.04 0.86 7.71 -51.93 -0.40 0.46 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -38.66 372.44 -10.64 -49.30 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.88 Total: -2.23 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -3.72 Total: 6.73 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -0.67 Total: -68.47 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.05 Total: -10.27 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.02 Total: 19.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.66 -10.64 -49.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033876963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.387 kcal (2) G-P(sol) polarization free energy of solvation -38.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds