Wall clock time and date at job start Wed Apr 1 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47470 * 2 1 4 4 C 1.34779 * 119.99832 * 274.50211 * 3 2 1 5 5 O 1.21773 * 120.00184 * 185.27602 * 4 3 2 6 6 C 1.46292 * 119.99984 * 5.27378 * 4 3 2 7 7 N 1.34884 * 126.49684 * 5.94799 * 6 4 3 8 8 C 1.30175 * 109.73293 * 180.02562 * 7 6 4 9 9 N 1.36243 * 109.82133 * 0.02562 * 8 7 6 10 10 C 1.36540 * 132.77741 * 180.02562 * 9 8 7 11 11 C 1.35028 * 120.59654 * 179.97438 * 10 9 8 12 12 C 1.40395 * 120.43999 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.21764 * 180.02562 * 12 11 10 14 14 C 1.36333 * 119.55713 * 359.97438 * 12 11 10 15 15 C 1.37261 * 107.18722 * 359.72777 * 9 8 7 16 16 C 1.46499 * 120.00025 * 94.50330 * 3 2 1 17 17 H 1.09002 * 110.88287 * 179.66854 * 16 3 2 18 18 C 1.55151 * 111.00425 * 303.54267 * 16 3 2 19 19 C 1.54324 * 102.94079 * 82.57432 * 18 16 3 20 20 N 1.47020 * 107.27242 * 22.19366 * 19 18 16 21 21 C 1.36934 * 125.64895 * 180.79243 * 20 19 18 22 22 H 1.08008 * 119.99866 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00067 * 0.02562 * 21 20 19 24 24 N 1.31611 * 119.99922 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99825 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47028 * 90.00342 * 25 23 21 27 27 H 1.48502 * 109.47316 * 210.00269 * 25 23 21 28 28 H 1.48497 * 109.47365 * 330.00302 * 25 23 21 29 29 C 1.47429 * 108.70151 * 1.06156 * 20 19 18 30 30 H 1.09006 * 109.46576 * 55.94864 * 1 2 3 31 31 H 1.09000 * 109.47316 * 175.94686 * 1 2 3 32 32 H 1.08996 * 109.47186 * 295.95280 * 1 2 3 33 33 H 1.09003 * 109.47110 * 239.99506 * 2 1 3 34 34 H 1.09006 * 109.46680 * 119.99795 * 2 1 3 35 35 H 1.08003 * 125.09016 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.69952 * 359.94756 * 10 9 8 37 37 H 1.08001 * 119.77543 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47175 * 90.00188 * 13 12 11 39 39 H 1.09008 * 109.46911 * 209.99766 * 13 12 11 40 40 H 1.09000 * 109.47365 * 329.99467 * 13 12 11 41 41 H 1.08000 * 120.39612 * 180.02562 * 14 12 11 42 42 H 1.09004 * 110.72416 * 324.21290 * 18 16 3 43 43 H 1.08997 * 110.72232 * 200.93914 * 18 16 3 44 44 H 1.08998 * 109.88704 * 262.77509 * 19 18 16 45 45 H 1.09002 * 109.88596 * 141.61260 * 19 18 16 46 46 H 0.97005 * 120.00010 * 180.02562 * 24 23 21 47 47 H 1.08994 * 110.36968 * 94.70545 * 29 20 19 48 48 H 1.08995 * 110.36516 * 217.03607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1566 2.0470 -1.1636 5 8 2.6523 3.1593 -1.1735 6 6 1.7113 1.4335 -2.4148 7 7 1.0480 0.2662 -2.5444 8 6 0.8141 0.0310 -3.8032 9 7 1.3187 1.0425 -4.5637 10 6 1.3366 1.2705 -5.9098 11 6 1.9175 2.3816 -6.4111 12 6 2.5125 3.3214 -5.5544 13 6 3.1589 4.5600 -6.1192 14 6 2.5007 3.1064 -4.2082 15 6 1.8889 1.9495 -3.7057 16 6 2.3565 2.0386 1.2648 17 1 2.7080 3.0558 1.0922 18 6 1.1487 2.0254 2.2386 19 6 1.2352 0.6233 2.8776 20 7 2.6231 0.1611 2.7299 21 6 3.1116 -1.0460 3.1533 22 1 4.1516 -1.2923 2.9976 23 6 2.2702 -1.9531 3.7827 24 7 1.0028 -1.6531 3.9720 25 14 2.9365 -3.6001 4.3596 26 1 3.4329 -3.4724 5.7533 27 1 1.8548 -4.6163 4.3107 28 1 4.0514 -4.0208 3.4736 29 6 3.4032 1.2152 2.0562 30 1 -0.3633 0.5755 -0.8515 31 1 -0.3634 -1.0251 -0.0726 32 1 -0.3633 0.4497 0.9240 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8901 35 1 0.2975 -0.8362 -4.1872 36 1 0.8824 0.5554 -6.5797 37 1 1.9244 2.5484 -7.4781 38 1 2.4200 5.3588 -6.1825 39 1 3.9763 4.8719 -5.4689 40 1 3.5481 4.3452 -7.1144 41 1 2.9540 3.8206 -3.5367 42 1 0.2123 2.1436 1.6934 43 1 1.2557 2.8017 2.9962 44 1 0.5601 -0.0607 2.3634 45 1 0.9741 0.6806 3.9343 46 1 0.4148 -2.2868 4.4121 47 1 3.9041 1.8450 2.7913 48 1 4.1306 0.7726 1.3759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033877024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:06 Heat of formation + Delta-G solvation = 103.609812 kcal Electronic energy + Delta-G solvation = -30900.175434 eV Core-core repulsion = 26958.163131 eV Total energy + Delta-G solvation = -3942.012302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.94006 -39.60981 -37.98381 -37.24625 -34.50465 -34.00795 -32.17875 -31.33261 -30.04646 -29.78073 -29.11662 -27.38092 -26.48418 -24.48917 -23.98749 -23.14172 -22.22569 -22.11272 -20.27211 -19.96898 -18.75193 -17.71247 -16.94306 -16.81763 -16.27689 -16.10772 -15.89882 -15.19327 -14.65694 -14.57305 -14.39771 -14.37109 -13.86290 -13.76914 -13.69655 -13.16944 -12.83441 -12.57645 -12.47864 -12.21501 -11.94177 -11.82636 -11.79925 -11.75303 -11.59119 -10.99076 -10.87820 -10.78803 -10.55350 -10.50297 -10.29033 -10.19796 -10.06893 -9.95681 -9.78343 -9.56852 -9.48849 -9.16025 -8.55825 -8.03415 -7.54698 -6.71253 -5.66467 -2.99803 0.46856 0.92253 2.35240 2.43615 3.06614 3.43368 3.49029 3.50300 3.56799 3.84241 4.12639 4.33840 4.45003 4.48881 4.54278 4.65112 4.83915 5.13657 5.19173 5.27206 5.35119 5.48883 5.51378 5.54270 5.63475 5.70009 5.76412 5.84983 5.99160 6.03011 6.11251 6.21208 6.31061 6.32630 6.36339 6.41481 6.52503 6.62706 6.68712 6.76289 6.82032 6.91116 6.99283 7.21384 7.37342 7.63376 7.69682 7.72447 7.91295 8.11442 8.30947 8.70572 9.26987 9.86552 10.52806 11.44368 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003037 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.128950 B = 9217.507608 C = 9861.334666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 N -0.568 5.568 4 C 0.597 3.403 5 O -0.565 6.565 6 C -0.049 4.049 7 N -0.397 5.397 8 C 0.134 3.866 9 N -0.369 5.369 10 C 0.053 3.947 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.110 4.110 14 C -0.069 4.069 15 C 0.075 3.925 16 C 0.124 3.876 17 H 0.098 0.902 18 C -0.157 4.157 19 C 0.168 3.832 20 N -0.601 5.601 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.125 3.875 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.215 0.785 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.251 0.749 47 H 0.030 0.970 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 8.213 -22.918 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 N -0.297 5.297 4 C 0.386 3.614 5 O -0.445 6.445 6 C -0.184 4.184 7 N -0.111 5.111 8 C -0.142 4.142 9 N -0.040 5.040 10 C -0.069 4.069 11 C -0.153 4.153 12 C -0.092 4.092 13 C -0.167 4.167 14 C -0.088 4.088 15 C -0.037 4.037 16 C 0.020 3.980 17 H 0.116 0.884 18 C -0.196 4.196 19 C 0.044 3.956 20 N -0.328 5.328 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.002 4.002 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.231 0.769 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.175 0.825 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.203 7.906 -22.109 23.511 hybrid contribution 0.280 -0.708 -0.398 0.859 sum -0.923 7.198 -22.507 23.648 Atomic orbital electron populations 1.22098 0.96451 1.01278 1.00681 1.22180 0.94555 0.80846 1.05533 1.47653 1.62494 1.14863 1.04656 1.16605 0.78398 0.84362 0.82064 1.90733 1.47069 1.20002 1.86735 1.20544 1.10359 0.95494 0.91983 1.70529 1.11374 1.13555 1.15668 1.25262 1.07709 0.95671 0.85541 1.43074 1.37143 1.17511 1.06281 1.21642 1.02862 1.00173 0.82226 1.20774 0.99944 0.93592 1.00962 1.19913 0.99069 0.97331 0.92922 1.20753 1.00505 0.94201 1.01224 1.20652 0.97991 0.95058 0.95135 1.19244 1.01478 0.92845 0.90157 1.22239 0.96508 0.96658 0.82613 0.88383 1.23291 0.97377 1.01010 0.97956 1.21397 0.86695 0.88955 0.98568 1.44586 1.05599 1.14380 1.68257 1.19026 0.94472 0.90502 1.31638 0.90554 1.24759 0.95828 0.98554 1.01048 1.69966 1.03577 1.35355 1.47660 0.86163 0.77584 0.83687 0.78591 1.21771 1.21751 1.20772 1.21898 0.93404 0.91029 0.93821 0.93525 0.92726 0.92606 0.90509 0.85714 0.76887 0.81501 0.83402 0.90694 0.90849 0.91235 0.82469 0.91697 0.91602 0.91932 0.94229 0.93812 0.95265 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.64 37.15 0.32 -2.45 16 2 C 0.09 1.83 4.70 -4.05 -0.02 1.81 16 3 N -0.57 -11.24 2.53 -165.34 -0.42 -11.66 16 4 C 0.60 11.62 7.60 -13.02 -0.10 11.53 16 5 O -0.56 -11.63 15.17 5.12 0.08 -11.55 16 6 C -0.05 -0.85 6.47 -82.57 -0.53 -1.38 16 7 N -0.40 -6.21 6.03 -10.54 -0.06 -6.28 16 8 C 0.13 1.57 12.73 -89.54 -1.14 0.43 16 9 N -0.37 -4.18 2.94 -62.19 -0.18 -4.36 16 10 C 0.05 0.40 10.95 -16.60 -0.18 0.21 16 11 C -0.13 -0.92 9.67 -39.91 -0.39 -1.30 16 12 C -0.09 -0.80 5.89 -104.50 -0.62 -1.41 16 13 C -0.11 -0.68 10.03 36.00 0.36 -0.32 16 14 C -0.07 -0.85 9.39 -39.54 -0.37 -1.23 16 15 C 0.07 1.08 6.72 -83.99 -0.56 0.51 16 16 C 0.12 2.48 3.67 -65.79 -0.24 2.24 16 17 H 0.10 1.91 7.02 -51.93 -0.36 1.54 16 18 C -0.16 -3.14 5.99 -24.90 -0.15 -3.29 16 19 C 0.17 4.04 4.15 -3.07 -0.01 4.03 16 20 N -0.60 -15.10 1.90 -170.07 -0.32 -15.42 16 21 C -0.23 -6.25 9.91 -15.06 -0.15 -6.40 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.33 10.31 55.49 0.57 -25.75 16 25 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 29 C 0.13 2.73 6.54 -2.53 -0.02 2.71 16 30 H 0.05 0.84 6.46 -51.93 -0.34 0.50 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.11 4.60 -51.93 -0.24 0.87 16 33 H 0.08 1.52 5.83 -51.93 -0.30 1.22 16 34 H 0.13 2.97 4.37 -51.93 -0.23 2.74 16 35 H 0.21 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.09 -51.92 -0.42 0.05 16 40 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 41 H 0.16 2.07 7.19 -52.49 -0.38 1.69 16 42 H 0.06 1.25 6.81 -51.93 -0.35 0.90 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.60 4.36 -51.93 -0.23 1.37 16 45 H 0.04 1.07 7.49 -51.93 -0.39 0.68 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.09 369.61 -10.27 -43.36 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.58 Total: 3.65 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.89 Total: 5.45 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.41 Total: -63.47 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.09 -10.27 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033877024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.968 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds