Wall clock time and date at job start Wed Apr 1 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47470 * 2 1 4 4 C 1.34779 * 119.99832 * 274.50211 * 3 2 1 5 5 O 1.21773 * 120.00184 * 185.27602 * 4 3 2 6 6 C 1.46292 * 119.99984 * 5.27378 * 4 3 2 7 7 N 1.34884 * 126.49684 * 5.94799 * 6 4 3 8 8 C 1.30175 * 109.73293 * 180.02562 * 7 6 4 9 9 N 1.36243 * 109.82133 * 0.02562 * 8 7 6 10 10 C 1.36540 * 132.77741 * 180.02562 * 9 8 7 11 11 C 1.35028 * 120.59654 * 179.97438 * 10 9 8 12 12 C 1.40395 * 120.43999 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.21764 * 180.02562 * 12 11 10 14 14 C 1.36333 * 119.55713 * 359.97438 * 12 11 10 15 15 C 1.37261 * 107.18722 * 359.72777 * 9 8 7 16 16 C 1.46499 * 120.00025 * 94.50330 * 3 2 1 17 17 H 1.09002 * 110.88287 * 179.66854 * 16 3 2 18 18 C 1.55151 * 111.00425 * 303.54267 * 16 3 2 19 19 C 1.54324 * 102.94079 * 82.57432 * 18 16 3 20 20 N 1.47020 * 107.27242 * 22.19366 * 19 18 16 21 21 C 1.36934 * 125.64895 * 180.79243 * 20 19 18 22 22 H 1.08008 * 119.99866 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00067 * 0.02562 * 21 20 19 24 24 N 1.31611 * 119.99922 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99825 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47028 * 90.00342 * 25 23 21 27 27 H 1.48502 * 109.47316 * 210.00269 * 25 23 21 28 28 H 1.48497 * 109.47365 * 330.00302 * 25 23 21 29 29 C 1.47429 * 108.70151 * 1.06156 * 20 19 18 30 30 H 1.09006 * 109.46576 * 55.94864 * 1 2 3 31 31 H 1.09000 * 109.47316 * 175.94686 * 1 2 3 32 32 H 1.08996 * 109.47186 * 295.95280 * 1 2 3 33 33 H 1.09003 * 109.47110 * 239.99506 * 2 1 3 34 34 H 1.09006 * 109.46680 * 119.99795 * 2 1 3 35 35 H 1.08003 * 125.09016 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.69952 * 359.94756 * 10 9 8 37 37 H 1.08001 * 119.77543 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47175 * 90.00188 * 13 12 11 39 39 H 1.09008 * 109.46911 * 209.99766 * 13 12 11 40 40 H 1.09000 * 109.47365 * 329.99467 * 13 12 11 41 41 H 1.08000 * 120.39612 * 180.02562 * 14 12 11 42 42 H 1.09004 * 110.72416 * 324.21290 * 18 16 3 43 43 H 1.08997 * 110.72232 * 200.93914 * 18 16 3 44 44 H 1.08998 * 109.88704 * 262.77509 * 19 18 16 45 45 H 1.09002 * 109.88596 * 141.61260 * 19 18 16 46 46 H 0.97005 * 120.00010 * 180.02562 * 24 23 21 47 47 H 1.08994 * 110.36968 * 94.70545 * 29 20 19 48 48 H 1.08995 * 110.36516 * 217.03607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1566 2.0470 -1.1636 5 8 2.6523 3.1593 -1.1735 6 6 1.7113 1.4335 -2.4148 7 7 1.0480 0.2662 -2.5444 8 6 0.8141 0.0310 -3.8032 9 7 1.3187 1.0425 -4.5637 10 6 1.3366 1.2705 -5.9098 11 6 1.9175 2.3816 -6.4111 12 6 2.5125 3.3214 -5.5544 13 6 3.1589 4.5600 -6.1192 14 6 2.5007 3.1064 -4.2082 15 6 1.8889 1.9495 -3.7057 16 6 2.3565 2.0386 1.2648 17 1 2.7080 3.0558 1.0922 18 6 1.1487 2.0254 2.2386 19 6 1.2352 0.6233 2.8776 20 7 2.6231 0.1611 2.7299 21 6 3.1116 -1.0460 3.1533 22 1 4.1516 -1.2923 2.9976 23 6 2.2702 -1.9531 3.7827 24 7 1.0028 -1.6531 3.9720 25 14 2.9365 -3.6001 4.3596 26 1 3.4329 -3.4724 5.7533 27 1 1.8548 -4.6163 4.3107 28 1 4.0514 -4.0208 3.4736 29 6 3.4032 1.2152 2.0562 30 1 -0.3633 0.5755 -0.8515 31 1 -0.3634 -1.0251 -0.0726 32 1 -0.3633 0.4497 0.9240 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8901 35 1 0.2975 -0.8362 -4.1872 36 1 0.8824 0.5554 -6.5797 37 1 1.9244 2.5484 -7.4781 38 1 2.4200 5.3588 -6.1825 39 1 3.9763 4.8719 -5.4689 40 1 3.5481 4.3452 -7.1144 41 1 2.9540 3.8206 -3.5367 42 1 0.2123 2.1436 1.6934 43 1 1.2557 2.8017 2.9962 44 1 0.5601 -0.0607 2.3634 45 1 0.9741 0.6806 3.9343 46 1 0.4148 -2.2868 4.4121 47 1 3.9041 1.8450 2.7913 48 1 4.1306 0.7726 1.3759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033877024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:05 Heat of formation + Delta-G solvation = 87.099646 kcal Electronic energy + Delta-G solvation = -30900.891368 eV Core-core repulsion = 26958.163131 eV Total energy + Delta-G solvation = -3942.728237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.84149 -41.14064 -39.02911 -38.68683 -36.06583 -35.02319 -34.05462 -32.18263 -31.69360 -31.09631 -30.47520 -28.81197 -27.71389 -26.39317 -24.98148 -24.28156 -23.60776 -22.98516 -21.92220 -21.61869 -20.04705 -18.92631 -18.86609 -17.96313 -17.31332 -17.18303 -16.98892 -16.65836 -16.20495 -15.86332 -15.68780 -15.48533 -15.33992 -15.21715 -14.60013 -14.37650 -14.14752 -14.00153 -13.78188 -13.65041 -13.39534 -13.23705 -12.91641 -12.88151 -12.81164 -12.75091 -12.51207 -12.45631 -12.15244 -12.02541 -11.99215 -11.76839 -11.59392 -11.48498 -11.38911 -11.29756 -10.71447 -10.64135 -10.27459 -9.61861 -8.76311 -8.46177 -7.78673 -5.13652 -0.34897 0.12299 1.31541 1.48901 1.49756 1.53404 1.58408 2.14849 2.29212 2.52716 2.59495 3.38134 3.40596 3.46334 3.67779 3.73504 3.78708 3.84483 3.91617 4.01909 4.15324 4.21926 4.35072 4.41230 4.56428 4.64774 4.69272 4.71819 4.72323 4.81513 4.85822 4.87418 4.88879 4.97881 5.03886 5.04538 5.15426 5.19311 5.26633 5.35664 5.41632 5.50027 5.56118 5.60344 5.72422 5.80988 5.89295 6.19443 6.25244 6.56075 6.73015 7.15618 7.26429 7.80355 8.46127 9.30695 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003037 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.128950 B = 9217.507608 C = 9861.334666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.108 3.892 3 N -0.576 5.576 4 C 0.594 3.406 5 O -0.589 6.589 6 C -0.117 4.117 7 N -0.431 5.431 8 C 0.145 3.855 9 N -0.370 5.370 10 C 0.065 3.935 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.114 4.114 14 C -0.128 4.128 15 C 0.083 3.917 16 C 0.133 3.867 17 H 0.106 0.894 18 C -0.142 4.142 19 C 0.181 3.819 20 N -0.613 5.613 21 C -0.240 4.240 22 H 0.076 0.924 23 C -0.055 4.055 24 N -0.942 5.942 25 Si 0.973 3.027 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.273 1.273 29 C 0.127 3.873 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.259 0.741 36 H 0.219 0.781 37 H 0.196 0.804 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.004 0.996 46 H 0.246 0.754 47 H 0.039 0.961 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 8.121 -27.450 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 N -0.305 5.305 4 C 0.385 3.615 5 O -0.472 6.472 6 C -0.248 4.248 7 N -0.145 5.145 8 C -0.132 4.132 9 N -0.041 5.041 10 C -0.056 4.056 11 C -0.157 4.157 12 C -0.055 4.055 13 C -0.171 4.171 14 C -0.148 4.148 15 C -0.031 4.031 16 C 0.028 3.972 17 H 0.124 0.876 18 C -0.181 4.181 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.368 4.368 22 H 0.094 0.906 23 C -0.249 4.249 24 N -0.590 5.590 25 Si 0.802 3.198 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.198 1.198 29 C 0.000 4.000 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.274 0.726 36 H 0.236 0.764 37 H 0.213 0.787 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.023 0.977 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.406 7.834 -26.635 27.798 hybrid contribution 0.391 -0.589 0.654 0.963 sum -1.015 7.245 -25.980 26.991 Atomic orbital electron populations 1.21911 0.95545 1.01216 1.00078 1.21853 0.95089 0.80887 1.03578 1.47642 1.63279 1.14743 1.04825 1.17002 0.77626 0.84109 0.82720 1.90685 1.48319 1.20975 1.87221 1.20122 1.15090 0.97694 0.91857 1.70303 1.12334 1.13542 1.18306 1.26036 1.06351 0.96211 0.84585 1.43298 1.36570 1.16673 1.07511 1.22686 1.01047 1.01035 0.80810 1.21367 0.98891 0.92546 1.02923 1.20431 0.95573 0.97842 0.91704 1.20906 1.00553 0.93235 1.02363 1.20564 1.01928 0.95580 0.96684 1.19322 1.00432 0.93400 0.89944 1.22106 0.95660 0.96621 0.82826 0.87614 1.23158 0.97864 0.98948 0.98166 1.21126 0.86010 0.90804 0.96366 1.44725 1.06377 1.14553 1.68340 1.19303 0.94582 0.91612 1.31345 0.90622 1.25492 0.96148 1.01682 1.01579 1.70162 1.04486 1.36070 1.48324 0.85168 0.77005 0.79710 0.77945 1.21693 1.21950 1.19800 1.21966 0.93583 0.90569 0.93836 0.92657 0.92645 0.94158 0.90329 0.89407 0.72576 0.76448 0.78709 0.89352 0.91531 0.88296 0.84821 0.90937 0.89816 0.93759 0.97743 0.94408 0.94297 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.64 71.98 0.62 -4.45 16 2 C 0.11 4.59 4.70 86.38 0.41 4.99 16 3 N -0.58 -23.93 2.53 -795.18 -2.01 -25.94 16 4 C 0.59 24.39 7.60 86.34 0.66 25.04 16 5 O -0.59 -25.73 15.17 -4.58 -0.07 -25.79 16 6 C -0.12 -4.14 6.47 41.23 0.27 -3.87 16 7 N -0.43 -13.49 6.03 -187.25 -1.13 -14.62 16 8 C 0.15 3.07 12.73 179.97 2.29 5.36 16 9 N -0.37 -7.35 2.94 -350.66 -1.03 -8.38 16 10 C 0.07 0.63 10.95 83.22 0.91 1.54 16 11 C -0.14 -1.17 9.67 22.06 0.21 -0.95 16 12 C -0.05 -0.77 5.89 -19.78 -0.12 -0.89 16 13 C -0.11 -1.03 10.03 71.23 0.71 -0.32 16 14 C -0.13 -3.18 9.39 22.30 0.21 -2.97 16 15 C 0.08 2.39 6.72 39.23 0.26 2.65 16 16 C 0.13 5.49 3.67 46.38 0.17 5.66 16 17 H 0.11 4.24 7.02 -2.39 -0.02 4.22 16 18 C -0.14 -5.86 5.99 31.78 0.19 -5.67 16 19 C 0.18 9.14 4.15 86.73 0.36 9.50 16 20 N -0.61 -32.11 1.90 -691.99 -1.32 -33.42 16 21 C -0.24 -13.56 9.91 84.03 0.83 -12.73 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 24 N -0.94 -56.00 10.31 21.65 0.22 -55.78 16 25 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 29 C 0.13 5.73 6.54 86.85 0.57 6.30 16 30 H 0.05 2.05 6.46 -2.38 -0.02 2.04 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.67 4.60 -2.39 -0.01 1.66 16 33 H 0.08 3.28 5.83 -2.39 -0.01 3.26 16 34 H 0.09 4.41 4.37 -2.38 -0.01 4.40 16 35 H 0.26 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.22 -0.11 8.06 -2.91 -0.02 -0.14 16 37 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 40 H 0.10 0.38 8.10 -2.39 -0.02 0.36 16 41 H 0.13 3.84 7.19 -2.91 -0.02 3.82 16 42 H 0.07 2.87 6.81 -2.38 -0.02 2.86 16 43 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.04 2.39 4.36 -2.39 -0.01 2.38 16 45 H 0.00 0.25 7.49 -2.39 -0.02 0.23 16 46 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.57 369.61 6.71 -71.86 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.99 Total: 17.24 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 9.02 Total: 26.54 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -5.26 Total: -138.14 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.07 Total: -25.79 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.57 6.71 -71.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033877024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.958 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds