Wall clock time and date at job start Wed Apr 1 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46888 * 2 1 4 4 C 1.34779 * 120.00166 * 109.99433 * 3 2 1 5 5 O 1.21595 * 120.00359 * 187.09075 * 4 3 2 6 6 C 1.47510 * 119.99580 * 7.09808 * 4 3 2 7 7 C 1.41046 * 119.39317 * 322.82265 * 6 4 3 8 8 C 1.35196 * 121.65349 * 180.26081 * 7 6 4 9 9 C 1.41383 * 119.93009 * 359.49863 * 8 7 6 10 10 N 1.31929 * 134.39205 * 180.11717 * 9 8 7 11 11 N 1.39921 * 109.05680 * 180.35750 * 10 9 8 12 12 H 0.97001 * 124.98069 * 180.02562 * 11 10 9 13 13 C 1.33814 * 110.02964 * 0.02562 * 11 10 9 14 14 C 1.50700 * 126.08144 * 179.97438 * 13 11 10 15 15 C 1.38537 * 107.83724 * 359.97438 * 13 11 10 16 16 C 1.38226 * 119.39462 * 142.85172 * 6 4 3 17 17 C 1.46503 * 119.99808 * 289.99936 * 3 2 1 18 18 H 1.08990 * 110.88963 * 11.68747 * 17 3 2 19 19 C 1.55160 * 111.00134 * 247.80673 * 17 3 2 20 20 C 1.54325 * 102.94294 * 277.42844 * 19 17 3 21 21 N 1.47016 * 107.26966 * 337.80972 * 20 19 17 22 22 C 1.36945 * 125.64563 * 178.98564 * 21 20 19 23 23 H 1.08000 * 120.00074 * 185.55770 * 22 21 20 24 24 C 1.38811 * 120.00121 * 5.56215 * 22 21 20 25 25 N 1.31622 * 119.99834 * 5.71066 * 24 22 21 26 26 Si 1.86796 * 120.00017 * 185.70430 * 24 22 21 27 27 H 1.48507 * 109.46700 * 94.99925 * 26 24 22 28 28 H 1.48496 * 109.47497 * 214.99454 * 26 24 22 29 29 H 1.48500 * 109.47501 * 334.99911 * 26 24 22 30 30 C 1.47420 * 108.70510 * 358.93929 * 21 20 19 31 31 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46884 * 299.99635 * 1 2 3 33 33 H 1.08998 * 109.47747 * 60.00158 * 1 2 3 34 34 H 1.09003 * 109.46884 * 240.00365 * 2 1 3 35 35 H 1.08998 * 109.47747 * 119.99842 * 2 1 3 36 36 H 1.07997 * 119.17329 * 359.97438 * 7 6 4 37 37 H 1.08002 * 120.03080 * 179.75030 * 8 7 6 38 38 H 1.08994 * 109.47504 * 270.00149 * 14 13 11 39 39 H 1.09002 * 109.47086 * 30.00202 * 14 13 11 40 40 H 1.08998 * 109.47227 * 149.99795 * 14 13 11 41 41 H 1.07993 * 120.32156 * 359.97438 * 16 6 4 42 42 H 1.08997 * 110.72056 * 35.79395 * 19 17 3 43 43 H 1.09002 * 110.72217 * 159.06337 * 19 17 3 44 44 H 1.09000 * 109.88029 * 97.22898 * 20 19 17 45 45 H 1.09003 * 109.88069 * 218.38738 * 20 19 17 46 46 H 0.97002 * 120.00002 * 180.02562 * 25 24 22 47 47 H 1.08999 * 110.36371 * 265.29140 * 30 21 20 48 48 H 1.09000 * 110.36906 * 142.97073 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.6192 1.8836 1.0968 5 8 2.9083 3.0637 1.1451 6 6 2.9263 1.0017 2.2387 7 6 2.0194 -0.0208 2.5871 8 6 2.2526 -0.8516 3.6279 9 6 3.4350 -0.7125 4.3904 10 7 3.9415 -1.3447 5.4317 11 7 5.1638 -0.7559 5.7735 12 1 5.7328 -1.0406 6.5058 13 6 5.4327 0.2576 4.9422 14 6 6.6541 1.1394 4.9836 15 6 4.3887 0.3520 4.0365 16 6 4.0972 1.1930 2.9480 17 6 1.8533 2.2165 -1.1923 18 1 1.1782 1.7453 -1.9065 19 6 3.2251 2.5290 -1.8465 20 6 3.7423 3.7202 -1.0127 21 7 2.5731 4.3558 -0.3877 22 6 2.6060 5.4389 0.4497 23 1 1.7000 5.7778 0.9300 24 6 3.8038 6.1011 0.6812 25 7 4.8844 5.7602 0.0114 26 14 3.8821 7.4761 1.9432 27 1 4.3428 6.9281 3.2443 28 1 4.8328 8.5189 1.4808 29 1 2.5329 8.0743 2.1078 30 6 1.3595 3.6348 -0.8126 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.1139 -0.1402 2.0108 37 1 1.5382 -1.6233 3.8741 38 1 6.4598 1.9993 5.6246 39 1 7.4973 0.5738 5.3802 40 1 6.8887 1.4828 3.9761 41 1 4.7813 1.9805 2.6687 42 1 3.8976 1.6758 -1.7585 43 1 3.0982 2.8152 -2.8905 44 1 4.4267 3.3643 -0.2426 45 1 4.2499 4.4341 -1.6614 46 1 5.7215 6.2228 0.1735 47 1 0.9107 4.1242 -1.6769 48 1 0.6438 3.5803 0.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033899104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:24 Heat of formation + Delta-G solvation = 133.716124 kcal Electronic energy + Delta-G solvation = -31489.012954 eV Core-core repulsion = 27548.306159 eV Total energy + Delta-G solvation = -3940.706795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.46458 -41.34104 -38.68707 -37.19126 -36.55521 -34.16164 -34.03675 -31.95048 -31.39912 -31.09326 -30.39692 -28.95531 -27.93730 -26.37268 -25.35098 -24.27196 -23.24070 -22.24373 -21.71862 -21.05581 -19.63712 -19.01819 -18.65166 -18.05827 -17.35433 -16.84444 -16.58426 -16.35856 -16.22220 -15.81858 -15.59912 -15.07467 -14.95532 -14.88342 -14.71482 -14.15111 -13.92437 -13.67688 -13.61217 -13.39101 -13.32260 -13.29427 -13.15019 -12.84997 -12.75886 -12.69935 -12.53337 -12.42828 -12.08707 -11.95479 -11.83492 -11.60185 -11.47861 -11.38030 -11.31444 -11.13860 -10.52886 -10.16248 -9.71809 -9.22161 -8.59962 -8.22599 -7.58522 -4.81600 -0.49896 0.50434 1.28312 1.43072 1.46278 1.53179 1.67830 2.19979 2.30232 2.63717 2.89730 3.22005 3.46749 3.57745 3.77526 3.89006 3.91852 3.99611 4.06100 4.16229 4.27745 4.31853 4.43034 4.51423 4.53072 4.55320 4.58875 4.67656 4.71096 4.78754 4.93574 4.97125 4.99778 5.07126 5.10386 5.12235 5.18495 5.21239 5.34405 5.37026 5.49067 5.54717 5.58338 5.73750 5.90677 5.97638 6.08167 6.15378 6.45342 6.49867 6.83280 7.36996 7.83579 8.07664 8.72464 9.52539 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.004956 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.032690 B = 5648.342817 C = 7780.746723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 N -0.603 5.603 4 C 0.504 3.496 5 O -0.475 6.475 6 C -0.176 4.176 7 C -0.062 4.062 8 C -0.117 4.117 9 C 0.104 3.896 10 N -0.334 5.334 11 N -0.409 5.409 12 H 0.459 0.541 13 C 0.143 3.857 14 C -0.099 4.099 15 C -0.242 4.242 16 C 0.011 3.989 17 C 0.148 3.852 18 H 0.131 0.869 19 C -0.147 4.147 20 C 0.203 3.797 21 N -0.575 5.575 22 C -0.173 4.173 23 H 0.056 0.944 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.955 3.045 27 H -0.301 1.301 28 H -0.297 1.297 29 H -0.275 1.275 30 C 0.127 3.873 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.084 0.916 44 H -0.007 1.007 45 H 0.001 0.999 46 H 0.234 0.766 47 H 0.032 0.968 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -20.279 5.602 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.050 4.050 3 N -0.338 5.338 4 C 0.290 3.710 5 O -0.346 6.346 6 C -0.181 4.181 7 C -0.083 4.083 8 C -0.138 4.138 9 C -0.050 4.050 10 N -0.162 5.162 11 N -0.111 5.111 12 H 0.307 0.693 13 C 0.002 3.998 14 C -0.157 4.157 15 C -0.252 4.252 16 C -0.011 4.011 17 C 0.044 3.956 18 H 0.148 0.852 19 C -0.186 4.186 20 C 0.078 3.922 21 N -0.298 5.298 22 C -0.303 4.303 23 H 0.074 0.926 24 C -0.262 4.262 25 N -0.608 5.608 26 Si 0.787 3.213 27 H -0.229 1.229 28 H -0.224 1.224 29 H -0.200 1.200 30 C 0.001 3.999 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.012 0.988 45 H 0.019 0.981 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.735 -20.477 6.592 21.686 hybrid contribution 0.961 1.743 0.641 2.091 sum -1.774 -18.734 7.233 20.160 Atomic orbital electron populations 1.22191 0.94423 1.03617 1.02315 1.22555 0.95564 0.81662 1.05243 1.47778 1.59870 1.13772 1.12418 1.19032 0.79657 0.88599 0.83663 1.91614 1.49019 1.14753 1.79202 1.19786 0.97904 1.00479 0.99954 1.21318 0.99497 0.91909 0.95607 1.20050 0.95185 1.03130 0.95449 1.21340 0.96245 0.93513 0.93883 1.77515 0.97016 1.22717 1.18934 1.46195 1.16983 1.22511 1.25419 0.69258 1.21757 0.97028 0.90809 0.90189 1.20764 0.91459 0.98100 1.05422 1.19419 0.98753 1.04029 1.02966 1.20470 0.95256 0.94374 0.90958 1.22163 0.96278 0.90470 0.86733 0.85168 1.23224 0.97543 0.98236 0.99578 1.20708 0.88992 0.90547 0.92001 1.44200 1.01434 1.31652 1.52562 1.18993 0.93619 1.01294 1.16422 0.92563 1.25170 0.96011 1.02401 1.02657 1.70181 0.99807 1.45385 1.45395 0.85352 0.76973 0.79535 0.79464 1.22917 1.22383 1.20023 1.21906 0.89825 0.91799 0.96367 0.88759 0.93320 0.91936 0.89870 0.87117 0.81275 0.82378 0.88324 0.86727 0.89756 0.87686 0.91346 0.89783 0.98839 0.98058 0.95635 0.95017 0.95748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.30 71.98 0.67 -1.99 16 2 C 0.07 1.45 5.61 86.38 0.48 1.94 16 3 N -0.60 -19.06 2.63 -793.88 -2.09 -21.14 16 4 C 0.50 20.31 6.74 86.69 0.58 20.90 16 5 O -0.48 -24.96 8.90 -4.01 -0.04 -24.99 16 6 C -0.18 -6.09 5.47 -20.15 -0.11 -6.20 16 7 C -0.06 -1.60 7.21 22.26 0.16 -1.44 16 8 C -0.12 -2.88 10.06 22.34 0.22 -2.65 16 9 C 0.10 2.97 7.49 42.27 0.32 3.28 16 10 N -0.33 -8.78 12.69 -48.55 -0.62 -9.39 16 11 N -0.41 -7.93 7.17 -46.73 -0.34 -8.26 16 12 H 0.46 4.78 8.96 -213.43 -1.91 2.87 16 13 C 0.14 3.21 7.28 42.33 0.31 3.51 16 14 C -0.10 -1.55 10.44 71.24 0.74 -0.80 16 15 C -0.24 -7.29 6.25 -20.26 -0.13 -7.42 16 16 C 0.01 0.39 9.65 22.85 0.22 0.61 16 17 C 0.15 4.90 3.55 46.38 0.16 5.06 16 18 H 0.13 3.12 7.39 -2.39 -0.02 3.10 16 19 C -0.15 -5.55 6.54 31.78 0.21 -5.34 16 20 C 0.20 10.78 4.27 86.73 0.37 11.15 16 21 N -0.57 -31.49 1.72 -692.01 -1.19 -32.68 16 22 C -0.17 -10.60 8.62 84.03 0.72 -9.88 16 23 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 24 C -0.07 -4.46 5.46 84.86 0.46 -3.99 16 25 N -0.95 -62.27 10.43 21.65 0.23 -62.04 16 26 Si 0.95 50.75 29.56 68.60 2.03 52.78 16 27 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 28 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 29 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 30 C 0.13 5.47 6.09 86.85 0.53 6.00 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.90 7.40 -2.39 -0.02 0.88 16 33 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 2.23 3.49 -5.65 -0.02 2.21 16 36 H 0.17 3.47 3.98 -2.91 -0.01 3.46 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 4.28 7.98 -2.91 -0.02 4.25 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 44 H -0.01 -0.40 6.51 -2.39 -0.02 -0.41 16 45 H 0.00 0.08 7.07 -2.39 -0.02 0.06 16 46 H 0.23 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.02 1.09 8.13 -2.39 -0.02 1.07 16 Total: -1.00 -87.80 372.14 3.00 -84.79 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.92 Total: 8.20 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.94 Total: 12.74 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -4.00 Total: -133.52 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.78 kcal Total: -87.80 3.00 -84.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033899104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.511 kcal (2) G-P(sol) polarization free energy of solvation -87.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds