Wall clock time and date at job start Wed Apr 1 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47347 * 2 1 4 4 C 1.34778 * 119.99686 * 275.09667 * 3 2 1 5 5 O 1.21641 * 119.99602 * 174.48429 * 4 3 2 6 6 C 1.47219 * 120.00246 * 354.47515 * 4 3 2 7 7 C 1.38940 * 120.86729 * 305.09678 * 6 4 3 8 8 C 1.39737 * 119.29685 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.42765 * 179.97438 * 8 7 6 10 10 C 1.35110 * 121.14364 * 0.02562 * 8 7 6 11 11 N 1.36149 * 121.72411 * 0.02562 * 10 8 7 12 12 C 1.37003 * 132.65162 * 179.97438 * 11 10 8 13 13 C 1.34966 * 107.14811 * 179.28876 * 12 11 10 14 14 N 1.33742 * 108.60911 * 0.60734 * 13 12 11 15 15 C 1.31987 * 109.16452 * 359.45570 * 14 13 12 16 16 C 1.46496 * 120.00039 * 95.09174 * 3 2 1 17 17 H 1.09001 * 110.91787 * 2.44856 * 16 3 2 18 18 C 1.55158 * 111.00285 * 126.35285 * 16 3 2 19 19 C 1.54325 * 102.94123 * 153.57800 * 18 16 3 20 20 N 1.47023 * 107.27254 * 337.80213 * 19 18 16 21 21 C 1.36930 * 125.65015 * 178.90394 * 20 19 18 22 22 H 1.07996 * 119.99983 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00176 * 0.03326 * 21 20 19 24 24 N 1.31625 * 119.99819 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00282 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47236 * 59.99631 * 25 23 21 27 27 H 1.48498 * 109.46885 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46731 * 299.99470 * 25 23 21 29 29 C 1.47429 * 108.70239 * 358.94693 * 20 19 18 30 30 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46778 * 299.99941 * 1 2 3 32 32 H 1.08993 * 109.47134 * 59.99905 * 1 2 3 33 33 H 1.09008 * 109.46920 * 239.99781 * 2 1 3 34 34 H 1.09005 * 109.47382 * 120.00341 * 2 1 3 35 35 H 1.08008 * 120.35050 * 359.94975 * 7 6 4 36 36 H 1.09001 * 109.46839 * 90.00224 * 9 8 7 37 37 H 1.08996 * 109.47515 * 209.99827 * 9 8 7 38 38 H 1.08991 * 109.47498 * 330.00252 * 9 8 7 39 39 H 1.08008 * 119.14134 * 180.02562 * 10 8 7 40 40 H 1.08000 * 126.42254 * 359.97438 * 12 11 10 41 41 H 1.08001 * 125.69399 * 180.02562 * 13 12 11 42 42 H 1.08994 * 110.72231 * 35.21433 * 18 16 3 43 43 H 1.09000 * 110.72219 * 271.93866 * 18 16 3 44 44 H 1.09005 * 109.88236 * 218.38764 * 19 18 16 45 45 H 1.08998 * 109.88422 * 97.22476 * 19 18 16 46 46 H 0.97000 * 120.00160 * 180.02562 * 24 23 21 47 47 H 1.08994 * 110.36777 * 142.96270 * 29 20 19 48 48 H 1.09002 * 110.36233 * 265.18117 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1452 2.0510 -1.1626 5 8 2.4541 3.2276 -1.1560 6 6 1.9103 1.3588 -2.4405 7 6 2.6019 0.1967 -2.7594 8 6 2.3527 -0.4339 -3.9812 9 6 3.1016 -1.6941 -4.3303 10 6 1.4527 0.0673 -4.8555 11 7 0.7514 1.2033 -4.5886 12 6 -0.1947 1.8978 -5.2955 13 6 -0.5639 2.9516 -4.5374 14 7 0.1380 2.9253 -3.3992 15 6 0.9371 1.8748 -3.4071 16 6 2.3687 2.0342 1.2637 17 1 2.2515 1.3477 2.1021 18 6 3.8092 2.6085 1.2122 19 6 3.7555 3.7680 2.2292 20 7 2.3454 4.1591 2.3714 21 6 1.8689 5.1407 3.1987 22 1 0.8105 5.3528 3.2312 23 6 2.7464 5.8633 3.9955 24 7 4.0363 5.6045 3.9561 25 14 2.0963 7.2019 5.1247 26 1 1.1371 6.6109 6.0919 27 1 3.2272 7.8184 5.8636 28 1 1.4079 8.2401 4.3163 29 6 1.5292 3.3187 1.4763 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3248 -0.2147 -2.0703 36 1 2.5427 -2.5594 -3.9740 37 1 3.2202 -1.7586 -5.4119 38 1 4.0835 -1.6761 -3.8577 39 1 1.2852 -0.4467 -5.7905 40 1 -0.5814 1.6429 -6.2712 41 1 -1.2964 3.6973 -4.8089 42 1 4.0404 2.9811 0.2144 43 1 4.5353 1.8570 1.5222 44 1 4.3389 4.6118 1.8605 45 1 4.1469 3.4361 3.1909 46 1 4.6495 6.1092 4.5132 47 1 0.5770 3.0758 1.9479 48 1 1.3628 3.8266 0.5264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033905048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:16 Heat of formation + Delta-G solvation = 104.025592 kcal Electronic energy + Delta-G solvation = -30713.232811 eV Core-core repulsion = 26771.238538 eV Total energy + Delta-G solvation = -3941.994273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.89574 -40.06453 -37.97167 -36.67859 -35.45993 -33.74251 -32.53396 -31.94033 -30.27143 -29.20904 -28.75131 -27.14747 -26.96044 -25.03900 -24.10054 -23.07633 -22.59771 -21.73396 -20.87512 -19.93633 -19.01446 -17.93900 -17.41231 -16.70266 -16.44962 -16.18194 -15.65810 -15.43635 -14.72256 -14.53202 -14.29759 -14.16094 -13.94796 -13.83013 -13.75486 -13.70742 -13.16987 -12.92519 -12.68478 -12.49598 -12.37573 -12.19730 -11.96500 -11.77509 -11.68626 -11.61811 -11.22200 -10.86619 -10.78163 -10.69981 -10.55572 -10.23570 -10.12699 -10.00447 -9.80734 -9.52144 -9.12082 -8.90039 -8.48282 -8.27777 -8.04903 -6.61570 -5.54654 -2.86452 0.21291 1.01495 2.23578 2.60661 2.84168 3.07664 3.40132 3.51655 3.55256 3.57179 3.90890 4.04366 4.29344 4.35401 4.59034 4.65403 4.80979 4.91271 4.93895 5.11694 5.15730 5.16767 5.26412 5.33688 5.45079 5.49000 5.55635 5.58295 5.63171 5.67456 5.73008 5.76449 5.79216 5.91354 6.00213 6.13529 6.18978 6.32474 6.43905 6.59508 6.71030 6.76856 6.81439 6.86812 7.34577 7.63090 7.72842 7.77775 7.82790 7.98829 8.40952 8.45339 9.39066 9.99531 10.66970 11.57228 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003026 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.625598 B = 9250.370336 C = 9965.427914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.565 3.435 5 O -0.485 6.485 6 C -0.064 4.064 7 C -0.071 4.071 8 C -0.114 4.114 9 C -0.103 4.103 10 C 0.064 3.936 11 N -0.366 5.366 12 C -0.100 4.100 13 C 0.031 3.969 14 N -0.469 5.469 15 C 0.246 3.754 16 C 0.133 3.867 17 H 0.093 0.907 18 C -0.156 4.156 19 C 0.186 3.814 20 N -0.602 5.602 21 C -0.220 4.220 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.924 5.924 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.127 3.873 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.182 0.818 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.251 0.749 47 H 0.031 0.969 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -21.384 -20.344 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.350 3.650 5 O -0.358 6.358 6 C -0.070 4.070 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.161 4.161 10 C -0.058 4.058 11 N -0.039 5.039 12 C -0.229 4.229 13 C -0.120 4.120 14 N -0.187 5.187 15 C 0.000 4.000 16 C 0.030 3.970 17 H 0.111 0.889 18 C -0.195 4.195 19 C 0.061 3.939 20 N -0.329 5.329 21 C -0.349 4.349 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.000 4.000 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.179 0.821 40 H 0.201 0.799 41 H 0.199 0.801 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.628 -19.973 -19.608 28.369 hybrid contribution -0.418 0.111 -0.244 0.497 sum -5.046 -19.861 -19.852 28.531 Atomic orbital electron populations 1.22192 0.95923 1.01739 1.02977 1.21764 0.94741 0.82877 1.03170 1.47858 1.65214 1.13792 1.06187 1.17511 0.78648 0.86322 0.82529 1.90920 1.44465 1.14094 1.86326 1.20285 0.96464 0.95568 0.94689 1.21448 0.98953 0.92597 0.96506 1.19232 0.98738 0.99481 0.94304 1.20699 0.99842 0.93087 1.02439 1.21348 0.95157 0.87949 1.01356 1.42813 1.27376 1.18071 1.15604 1.22659 0.99822 0.98820 1.01647 1.22660 1.00607 0.98220 0.90478 1.70769 1.08673 1.16886 1.22386 1.21559 0.99987 0.91794 0.86660 1.22454 0.96882 0.94899 0.82758 0.88853 1.23271 0.94323 0.99497 1.02424 1.21038 0.86097 0.92289 0.94464 1.44317 1.02190 1.39743 1.46635 1.19016 0.92459 1.08980 1.14420 0.90627 1.24775 0.95523 0.99992 1.00392 1.69962 1.01023 1.43219 1.43036 0.86199 0.77302 0.81828 0.80460 1.21317 1.21696 1.21247 1.21881 0.93072 0.89878 0.95177 0.91867 0.91692 0.92769 0.90508 0.89850 0.83161 0.90477 0.91100 0.90476 0.82083 0.79888 0.80056 0.90643 0.92607 0.93974 0.93771 0.93897 0.95080 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.20 37.16 0.38 -1.50 16 2 C 0.10 1.07 5.91 -4.04 -0.02 1.04 16 3 N -0.60 -9.39 2.57 -165.00 -0.42 -9.81 16 4 C 0.56 10.08 6.43 -12.61 -0.08 10.00 16 5 O -0.49 -11.13 13.17 5.24 0.07 -11.07 16 6 C -0.06 -0.92 5.04 -102.64 -0.52 -1.44 16 7 C -0.07 -0.70 7.36 -38.76 -0.29 -0.99 16 8 C -0.11 -0.84 5.82 -105.18 -0.61 -1.45 16 9 C -0.10 -0.38 9.97 36.00 0.36 -0.02 16 10 C 0.06 0.50 10.48 -16.75 -0.18 0.33 16 11 N -0.37 -4.13 2.94 -61.09 -0.18 -4.31 16 12 C -0.10 -0.98 11.76 -16.40 -0.19 -1.17 16 13 C 0.03 0.38 11.83 -17.88 -0.21 0.17 16 14 N -0.47 -8.05 11.30 -11.31 -0.13 -8.18 16 15 C 0.25 3.76 7.82 -154.12 -1.21 2.56 16 16 C 0.13 2.53 3.55 -65.78 -0.23 2.30 16 17 H 0.09 1.62 7.81 -51.93 -0.41 1.21 16 18 C -0.16 -3.27 6.29 -24.90 -0.16 -3.42 16 19 C 0.19 4.93 5.37 -3.06 -0.02 4.92 16 20 N -0.60 -16.90 3.39 -170.07 -0.58 -17.48 16 21 C -0.22 -6.63 10.28 -15.06 -0.15 -6.78 16 22 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -28.66 10.31 55.49 0.57 -28.08 16 25 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 29 C 0.13 3.02 6.62 -2.52 -0.02 3.00 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.08 0.67 4.55 -51.92 -0.24 0.44 16 34 H 0.08 0.77 7.84 -51.93 -0.41 0.37 16 35 H 0.15 1.17 7.37 -52.48 -0.39 0.78 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.18 8.05 -51.93 -0.42 -0.24 16 38 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 39 H 0.16 0.64 8.04 -52.48 -0.42 0.22 16 40 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.08 1.68 5.90 -51.93 -0.31 1.37 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.04 1.26 7.51 -51.93 -0.39 0.87 16 45 H 0.04 1.24 7.38 -51.93 -0.38 0.86 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 1.22 5.89 -51.93 -0.31 0.91 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -39.37 384.20 -10.15 -49.52 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.00 Total: -1.86 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.24 Total: 7.11 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.74 Total: -67.87 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.37 -10.15 -49.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033905048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.547 kcal (2) G-P(sol) polarization free energy of solvation -39.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds