Wall clock time and date at job start Wed Apr 1 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47347 * 2 1 4 4 C 1.34778 * 119.99686 * 275.09667 * 3 2 1 5 5 O 1.21641 * 119.99602 * 174.48429 * 4 3 2 6 6 C 1.47219 * 120.00246 * 354.47515 * 4 3 2 7 7 C 1.38940 * 120.86729 * 305.09678 * 6 4 3 8 8 C 1.39737 * 119.29685 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.42765 * 179.97438 * 8 7 6 10 10 C 1.35110 * 121.14364 * 0.02562 * 8 7 6 11 11 N 1.36149 * 121.72411 * 0.02562 * 10 8 7 12 12 C 1.37003 * 132.65162 * 179.97438 * 11 10 8 13 13 C 1.34966 * 107.14811 * 179.28876 * 12 11 10 14 14 N 1.33742 * 108.60911 * 0.60734 * 13 12 11 15 15 C 1.31987 * 109.16452 * 359.45570 * 14 13 12 16 16 C 1.46496 * 120.00039 * 95.09174 * 3 2 1 17 17 H 1.09001 * 110.91787 * 2.44856 * 16 3 2 18 18 C 1.55158 * 111.00285 * 126.35285 * 16 3 2 19 19 C 1.54325 * 102.94123 * 153.57800 * 18 16 3 20 20 N 1.47023 * 107.27254 * 337.80213 * 19 18 16 21 21 C 1.36930 * 125.65015 * 178.90394 * 20 19 18 22 22 H 1.07996 * 119.99983 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00176 * 0.03326 * 21 20 19 24 24 N 1.31625 * 119.99819 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00282 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47236 * 59.99631 * 25 23 21 27 27 H 1.48498 * 109.46885 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46731 * 299.99470 * 25 23 21 29 29 C 1.47429 * 108.70239 * 358.94693 * 20 19 18 30 30 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46778 * 299.99941 * 1 2 3 32 32 H 1.08993 * 109.47134 * 59.99905 * 1 2 3 33 33 H 1.09008 * 109.46920 * 239.99781 * 2 1 3 34 34 H 1.09005 * 109.47382 * 120.00341 * 2 1 3 35 35 H 1.08008 * 120.35050 * 359.94975 * 7 6 4 36 36 H 1.09001 * 109.46839 * 90.00224 * 9 8 7 37 37 H 1.08996 * 109.47515 * 209.99827 * 9 8 7 38 38 H 1.08991 * 109.47498 * 330.00252 * 9 8 7 39 39 H 1.08008 * 119.14134 * 180.02562 * 10 8 7 40 40 H 1.08000 * 126.42254 * 359.97438 * 12 11 10 41 41 H 1.08001 * 125.69399 * 180.02562 * 13 12 11 42 42 H 1.08994 * 110.72231 * 35.21433 * 18 16 3 43 43 H 1.09000 * 110.72219 * 271.93866 * 18 16 3 44 44 H 1.09005 * 109.88236 * 218.38764 * 19 18 16 45 45 H 1.08998 * 109.88422 * 97.22476 * 19 18 16 46 46 H 0.97000 * 120.00160 * 180.02562 * 24 23 21 47 47 H 1.08994 * 110.36777 * 142.96270 * 29 20 19 48 48 H 1.09002 * 110.36233 * 265.18117 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1452 2.0510 -1.1626 5 8 2.4541 3.2276 -1.1560 6 6 1.9103 1.3588 -2.4405 7 6 2.6019 0.1967 -2.7594 8 6 2.3527 -0.4339 -3.9812 9 6 3.1016 -1.6941 -4.3303 10 6 1.4527 0.0673 -4.8555 11 7 0.7514 1.2033 -4.5886 12 6 -0.1947 1.8978 -5.2955 13 6 -0.5639 2.9516 -4.5374 14 7 0.1380 2.9253 -3.3992 15 6 0.9371 1.8748 -3.4071 16 6 2.3687 2.0342 1.2637 17 1 2.2515 1.3477 2.1021 18 6 3.8092 2.6085 1.2122 19 6 3.7555 3.7680 2.2292 20 7 2.3454 4.1591 2.3714 21 6 1.8689 5.1407 3.1987 22 1 0.8105 5.3528 3.2312 23 6 2.7464 5.8633 3.9955 24 7 4.0363 5.6045 3.9561 25 14 2.0963 7.2019 5.1247 26 1 1.1371 6.6109 6.0919 27 1 3.2272 7.8184 5.8636 28 1 1.4079 8.2401 4.3163 29 6 1.5292 3.3187 1.4763 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.3248 -0.2147 -2.0703 36 1 2.5427 -2.5594 -3.9740 37 1 3.2202 -1.7586 -5.4119 38 1 4.0835 -1.6761 -3.8577 39 1 1.2852 -0.4467 -5.7905 40 1 -0.5814 1.6429 -6.2712 41 1 -1.2964 3.6973 -4.8089 42 1 4.0404 2.9811 0.2144 43 1 4.5353 1.8570 1.5222 44 1 4.3389 4.6118 1.8605 45 1 4.1469 3.4361 3.1909 46 1 4.6495 6.1092 4.5132 47 1 0.5770 3.0758 1.9479 48 1 1.3628 3.8266 0.5264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033905048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:15 Heat of formation + Delta-G solvation = 77.865280 kcal Electronic energy + Delta-G solvation = -30714.367207 eV Core-core repulsion = 26771.238538 eV Total energy + Delta-G solvation = -3943.128669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.72782 -41.41688 -38.88404 -38.35036 -36.81120 -34.81832 -34.16493 -32.91503 -31.73571 -30.65776 -30.03203 -28.79378 -27.55013 -26.65779 -25.60325 -24.02293 -23.58981 -22.50955 -22.32240 -22.03292 -20.18436 -19.00016 -18.79149 -18.26353 -17.55864 -17.21488 -16.81085 -16.65168 -16.34249 -16.00373 -15.70450 -15.46717 -15.00975 -14.77295 -14.68064 -14.55846 -14.24294 -14.20132 -14.14647 -13.70509 -13.53802 -13.50144 -13.11285 -13.00601 -12.86066 -12.74789 -12.70213 -12.43617 -12.28137 -12.15308 -12.08247 -12.07767 -11.86396 -11.74830 -11.44924 -11.09543 -10.72264 -10.62531 -9.71602 -9.66892 -8.88502 -8.87471 -7.85864 -5.22158 -0.57804 0.25276 1.32201 1.41714 1.47429 1.53434 1.71355 1.89572 1.94962 2.41887 2.49242 3.11046 3.23559 3.31643 3.55538 3.72191 3.77355 3.85246 3.89248 3.98464 4.07184 4.20279 4.26304 4.36098 4.44048 4.46129 4.50230 4.59432 4.60975 4.70820 4.74439 4.81279 4.84723 4.87518 4.94481 4.98194 5.02008 5.13214 5.20071 5.27770 5.29932 5.39288 5.53287 5.60500 5.64256 5.67508 5.75051 6.06588 6.17510 6.39790 6.91926 7.07977 7.15651 7.74322 8.40805 9.24448 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003026 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.625598 B = 9250.370336 C = 9965.427914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.564 3.436 5 O -0.556 6.556 6 C -0.116 4.116 7 C -0.038 4.038 8 C -0.116 4.116 9 C -0.099 4.099 10 C 0.073 3.927 11 N -0.368 5.368 12 C -0.075 4.075 13 C -0.004 4.004 14 N -0.544 5.544 15 C 0.219 3.781 16 C 0.154 3.846 17 H 0.123 0.877 18 C -0.139 4.139 19 C 0.196 3.804 20 N -0.623 5.623 21 C -0.249 4.249 22 H 0.075 0.925 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.984 3.016 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.283 1.283 29 C 0.126 3.874 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.174 0.826 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.211 0.789 40 H 0.234 0.766 41 H 0.197 0.803 42 H 0.058 0.942 43 H 0.094 0.906 44 H -0.007 1.007 45 H 0.025 0.975 46 H 0.248 0.752 47 H 0.033 0.967 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -26.051 -22.304 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.323 5.323 4 C 0.352 3.648 5 O -0.434 6.434 6 C -0.122 4.122 7 C -0.061 4.061 8 C -0.119 4.119 9 C -0.156 4.156 10 C -0.049 4.049 11 N -0.040 5.040 12 C -0.205 4.205 13 C -0.152 4.152 14 N -0.265 5.265 15 C -0.027 4.027 16 C 0.050 3.950 17 H 0.141 0.859 18 C -0.178 4.178 19 C 0.071 3.929 20 N -0.349 5.349 21 C -0.378 4.378 22 H 0.093 0.907 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.811 3.189 26 H -0.196 1.196 27 H -0.214 1.214 28 H -0.210 1.210 29 C -0.001 4.001 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.191 0.809 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.227 0.773 40 H 0.250 0.750 41 H 0.214 0.786 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.011 0.989 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.869 -24.717 -21.598 33.183 hybrid contribution -0.384 1.495 0.210 1.558 sum -5.252 -23.222 -21.388 32.005 Atomic orbital electron populations 1.22146 0.96131 1.03257 1.00723 1.22152 0.94491 0.80158 1.05930 1.47889 1.64606 1.15450 1.04393 1.18142 0.76815 0.85654 0.84170 1.90872 1.47620 1.17345 1.87543 1.19947 1.00193 0.98337 0.93759 1.21881 0.96580 0.90104 0.97573 1.19705 0.98722 1.00552 0.92939 1.20808 0.99654 0.91225 1.03927 1.22299 0.93463 0.86178 1.02921 1.43058 1.27720 1.18795 1.14450 1.23339 0.97926 0.96965 1.02258 1.23118 1.01550 1.00280 0.90297 1.70639 1.11140 1.19371 1.25303 1.21614 1.00476 0.92252 0.88404 1.22103 0.93991 0.93475 0.85449 0.85902 1.23050 0.96806 0.98236 0.99688 1.20783 0.84837 0.92581 0.94745 1.44637 1.03414 1.40171 1.46704 1.19406 0.92808 1.10316 1.15230 0.90674 1.25711 0.95802 1.02324 1.02013 1.70195 1.02121 1.44035 1.43556 0.85080 0.76912 0.78547 0.78335 1.19600 1.21356 1.20958 1.21901 0.93797 0.91685 0.92692 0.88319 0.93663 0.95349 0.87685 0.86936 0.80873 0.88633 0.89140 0.89918 0.77282 0.74978 0.78646 0.92324 0.88716 0.98887 0.95707 0.94240 0.94863 0.97006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.20 71.98 0.73 -2.67 16 2 C 0.09 1.80 5.91 86.38 0.51 2.31 16 3 N -0.59 -18.57 2.57 -794.17 -2.04 -20.61 16 4 C 0.56 21.12 6.43 86.60 0.56 21.68 16 5 O -0.56 -27.90 13.17 -4.16 -0.05 -27.95 16 6 C -0.12 -3.37 5.04 -18.58 -0.09 -3.46 16 7 C -0.04 -0.64 7.36 22.80 0.17 -0.48 16 8 C -0.12 -1.18 5.82 -20.22 -0.12 -1.30 16 9 C -0.10 -0.14 9.97 71.24 0.71 0.57 16 10 C 0.07 0.81 10.48 83.30 0.87 1.68 16 11 N -0.37 -7.56 2.94 -347.18 -1.02 -8.58 16 12 C -0.08 -1.33 11.76 83.13 0.98 -0.36 16 13 C 0.00 -0.10 11.83 83.65 0.99 0.89 16 14 N -0.54 -20.21 11.30 -189.71 -2.14 -22.35 16 15 C 0.22 6.88 7.82 135.76 1.06 7.94 16 16 C 0.15 5.93 3.55 46.39 0.16 6.09 16 17 H 0.12 4.04 7.81 -2.39 -0.02 4.02 16 18 C -0.14 -5.97 6.29 31.78 0.20 -5.77 16 19 C 0.20 11.00 5.37 86.73 0.47 11.47 16 20 N -0.62 -37.02 3.39 -691.97 -2.35 -39.37 16 21 C -0.25 -15.70 10.28 84.04 0.86 -14.84 16 22 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 23 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 24 N -0.95 -61.51 10.31 21.65 0.22 -61.29 16 25 Si 0.98 49.53 29.55 68.60 2.03 51.56 16 26 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 29 C 0.13 6.36 6.62 86.86 0.57 6.93 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.03 0.73 8.05 -2.39 -0.02 0.71 16 33 H 0.11 1.43 4.55 -2.38 -0.01 1.42 16 34 H 0.11 1.58 7.84 -2.38 -0.02 1.56 16 35 H 0.17 2.00 7.37 -2.91 -0.02 1.98 16 36 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.09 -0.15 8.05 -2.39 -0.02 -0.16 16 38 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 39 H 0.21 0.24 8.04 -2.91 -0.02 0.21 16 40 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 42 H 0.06 2.75 5.90 -2.39 -0.01 2.74 16 43 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 44 H -0.01 -0.46 7.51 -2.38 -0.02 -0.48 16 45 H 0.02 1.46 7.38 -2.39 -0.02 1.45 16 46 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.01 0.70 5.89 -2.39 -0.01 0.69 16 Total: -1.00 -99.28 384.20 4.71 -94.57 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.97 Total: 6.94 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 9.10 Total: 27.08 kcal Atomic # 7 Polarization: -144.86 SS G_CDS: -7.33 Total: -152.20 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.03 Total: 51.56 kcal Total: -99.28 4.71 -94.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033905048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.434 kcal (2) G-P(sol) polarization free energy of solvation -99.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds