Wall clock time and date at job start Wed Apr 1 2020 01:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47172 * 2 1 4 4 C 1.34784 * 119.99510 * 99.87572 * 3 2 1 5 5 O 1.21584 * 119.99393 * 187.20284 * 4 3 2 6 6 C 1.47598 * 120.00349 * 7.19785 * 4 3 2 7 7 C 1.40171 * 119.93987 * 329.89260 * 6 4 3 8 8 C 1.36190 * 120.52074 * 179.97438 * 7 6 4 9 9 C 1.40010 * 120.07824 * 359.97438 * 8 7 6 10 10 N 1.35554 * 133.40178 * 179.97438 * 9 8 7 11 11 C 1.30217 * 109.70440 * 180.02562 * 10 9 8 12 12 C 1.50706 * 124.92100 * 179.97438 * 11 10 9 13 13 N 1.35852 * 110.15222 * 359.97438 * 11 10 9 14 14 H 0.97000 * 126.36830 * 179.97438 * 13 11 10 15 15 C 1.38183 * 107.26751 * 0.02562 * 13 11 10 16 16 C 1.38413 * 134.02161 * 179.97438 * 15 13 11 17 17 C 1.46492 * 120.00272 * 279.87445 * 3 2 1 18 18 H 1.09004 * 110.63834 * 26.22265 * 17 3 2 19 19 C 1.55157 * 110.72353 * 262.89148 * 17 3 2 20 20 C 1.54913 * 101.58127 * 277.14092 * 19 17 3 21 21 N 1.47430 * 104.82630 * 322.98550 * 20 19 17 22 22 C 1.36942 * 125.64495 * 204.16576 * 21 20 19 23 23 H 1.07997 * 119.99789 * 179.97438 * 22 21 20 24 24 C 1.38811 * 120.00114 * 359.96031 * 22 21 20 25 25 N 1.31624 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99791 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47407 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47399 * 120.00032 * 26 24 22 29 29 H 1.48507 * 109.47079 * 239.99801 * 26 24 22 30 30 C 1.47020 * 108.70631 * 24.13382 * 21 20 19 31 31 H 1.09007 * 109.47221 * 300.00101 * 1 2 3 32 32 H 1.09003 * 109.47404 * 59.99298 * 1 2 3 33 33 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47357 * 240.00176 * 2 1 3 35 35 H 1.09004 * 109.47271 * 119.99930 * 2 1 3 36 36 H 1.08000 * 119.73708 * 359.97438 * 7 6 4 37 37 H 1.08004 * 119.95845 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47268 * 90.02301 * 12 11 10 39 39 H 1.09007 * 109.46851 * 210.01581 * 12 11 10 40 40 H 1.08997 * 109.47534 * 330.02083 * 12 11 10 41 41 H 1.08002 * 120.20862 * 0.02769 * 16 15 13 42 42 H 1.08999 * 111.00307 * 35.20496 * 19 17 3 43 43 H 1.08990 * 111.01002 * 159.05969 * 19 17 3 44 44 H 1.09003 * 110.36544 * 204.15186 * 20 19 17 45 45 H 1.08990 * 110.46230 * 81.86948 * 20 19 17 46 46 H 0.96999 * 119.99777 * 179.97438 * 25 24 22 47 47 H 1.09005 * 109.88143 * 239.52740 * 30 21 20 48 48 H 1.08989 * 109.88562 * 118.35419 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4317 1.9498 1.1500 5 8 2.7126 3.1325 1.1767 6 6 2.5432 1.1369 2.3769 7 6 1.6924 0.0395 2.5687 8 6 1.7854 -0.7190 3.6960 9 6 2.7361 -0.4069 4.6753 10 7 3.0586 -0.9600 5.8701 11 6 4.0325 -0.2896 6.4157 12 6 4.6587 -0.6086 7.7489 13 7 4.4023 0.7389 5.6089 14 1 5.1028 1.3860 5.7863 15 6 3.5940 0.6928 4.4890 16 6 3.4957 1.4604 3.3415 17 6 2.0574 2.1444 -1.2498 18 1 1.3108 1.7716 -1.9511 19 6 3.4759 2.0990 -1.8767 20 6 4.1992 3.2213 -1.0911 21 7 3.1788 4.2688 -0.9041 22 6 3.4294 5.5991 -0.6970 23 1 2.6089 6.2899 -0.5713 24 6 4.7380 6.0595 -0.6484 25 7 5.7381 5.2174 -0.8008 26 14 5.0798 7.8739 -0.3651 27 1 3.7941 8.6038 -0.2247 28 1 5.8812 8.0392 0.8741 29 1 5.8357 8.4215 -1.5201 30 6 1.8477 3.6490 -0.9777 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.9574 -0.2064 1.8166 37 1 1.1256 -1.5628 3.8343 38 1 5.4919 -1.2962 7.6038 39 1 5.0221 0.3105 8.2088 40 1 3.9152 -1.0706 8.3983 41 1 4.1526 2.3051 3.1948 42 1 3.9493 1.1328 -1.7025 43 1 3.4401 2.3283 -2.9416 44 1 5.0387 3.6082 -1.6687 45 1 4.5429 2.8499 -0.1257 46 1 6.6525 5.5392 -0.7672 47 1 1.2749 4.0962 -1.7901 48 1 1.3226 3.7850 -0.0324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034004279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:41 Heat of formation + Delta-G solvation = 125.399699 kcal Electronic energy + Delta-G solvation = -30878.765094 eV Core-core repulsion = 26937.697672 eV Total energy + Delta-G solvation = -3941.067422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27731 -40.28005 -37.53797 -36.12269 -35.36238 -33.26139 -32.39610 -31.42831 -30.47494 -29.79861 -28.88070 -28.17542 -26.84635 -24.41027 -23.55092 -22.74364 -22.51211 -21.17531 -20.65412 -19.88514 -18.91866 -17.71671 -17.55345 -16.63997 -16.47044 -15.70835 -15.36493 -15.09187 -14.78340 -14.45369 -14.36694 -13.93367 -13.62720 -13.53359 -13.49493 -13.31213 -13.18433 -12.95985 -12.44329 -12.38680 -12.03303 -11.97864 -11.75329 -11.58159 -11.43484 -11.40271 -10.87513 -10.80901 -10.72535 -10.71576 -10.52477 -10.12154 -10.07831 -9.93986 -9.65513 -9.37467 -8.78917 -8.41357 -8.39970 -8.14105 -7.99662 -6.49117 -5.40986 -2.76143 0.71250 1.36365 2.49935 2.67740 3.32888 3.39331 3.51517 3.56629 3.59224 3.91330 3.96693 4.45606 4.68177 4.71970 4.84665 4.91016 5.01997 5.08983 5.17773 5.25046 5.33326 5.35399 5.42089 5.45680 5.49187 5.60101 5.63897 5.72090 5.73930 5.76462 5.87139 5.97936 6.06084 6.16891 6.29183 6.36360 6.37496 6.43939 6.60094 6.67495 6.71399 6.80264 6.96065 7.15724 7.34491 7.71165 7.78471 7.85918 7.89053 8.06970 8.60268 8.84050 9.47881 10.10052 10.77337 11.63969 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.003791 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.731133 B = 7383.191037 C = 9403.247536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 N -0.601 5.601 4 C 0.535 3.465 5 O -0.455 6.455 6 C -0.104 4.104 7 C -0.131 4.131 8 C -0.078 4.078 9 C 0.063 3.937 10 N -0.497 5.497 11 C 0.283 3.717 12 C -0.077 4.077 13 N -0.595 5.595 14 H 0.425 0.575 15 C 0.038 3.962 16 C -0.047 4.047 17 C 0.135 3.865 18 H 0.081 0.919 19 C -0.161 4.161 20 C 0.162 3.838 21 N -0.578 5.578 22 C -0.191 4.191 23 H 0.072 0.928 24 C -0.020 4.020 25 N -0.927 5.927 26 Si 0.908 3.092 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.294 1.294 30 C 0.140 3.860 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.165 0.835 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.010 0.990 46 H 0.245 0.755 47 H 0.015 0.985 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -17.022 10.440 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.052 4.052 3 N -0.337 5.337 4 C 0.322 3.678 5 O -0.326 6.326 6 C -0.110 4.110 7 C -0.150 4.150 8 C -0.098 4.098 9 C -0.056 4.056 10 N -0.219 5.219 11 C 0.016 3.984 12 C -0.136 4.136 13 N -0.206 5.206 14 H 0.264 0.736 15 C -0.071 4.071 16 C -0.068 4.068 17 C 0.032 3.968 18 H 0.099 0.901 19 C -0.201 4.201 20 C 0.037 3.963 21 N -0.302 5.302 22 C -0.320 4.320 23 H 0.090 0.910 24 C -0.214 4.214 25 N -0.578 5.578 26 Si 0.740 3.260 27 H -0.208 1.208 28 H -0.223 1.223 29 H -0.222 1.222 30 C 0.013 3.987 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.181 0.819 37 H 0.150 0.850 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.028 0.972 46 H 0.056 0.944 47 H 0.033 0.967 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.222 -16.913 10.798 21.008 hybrid contribution 1.007 1.826 0.019 2.085 sum -5.216 -15.087 10.816 19.282 Atomic orbital electron populations 1.22292 0.96223 1.02137 1.03000 1.22409 0.94144 0.84071 1.04603 1.47630 1.65181 1.13198 1.07680 1.18162 0.79136 0.87782 0.82767 1.91170 1.44166 1.13548 1.83701 1.19830 0.98057 0.97207 0.95862 1.21818 1.00808 0.94492 0.97930 1.19912 0.97426 1.00829 0.91644 1.19200 0.98218 0.94266 0.93955 1.70364 1.14659 1.28726 1.08170 1.23623 0.93738 0.86002 0.95020 1.20384 1.01322 1.03131 0.88730 1.43024 1.32620 1.28204 1.16770 0.73638 1.18719 0.96668 1.00810 0.90924 1.20054 0.98653 0.98378 0.89764 1.22091 0.97745 0.93062 0.83891 0.90133 1.23474 0.96028 1.00578 1.00037 1.21798 0.92835 0.85404 0.96224 1.44153 0.99019 1.03539 1.83526 1.19050 0.91778 0.82299 1.38853 0.91031 1.24654 0.95539 0.97434 1.03769 1.69826 0.97706 1.31534 1.58721 0.86061 0.77562 0.85214 0.77152 1.20807 1.22263 1.22178 1.21435 0.90652 0.88758 0.97840 0.91884 0.91732 0.91472 0.91031 0.87260 0.81870 0.85032 0.89303 0.90119 0.88519 0.84530 0.92534 0.91500 0.88330 0.97190 0.94426 0.96717 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.16 37.15 0.34 -1.30 16 2 C 0.07 0.80 5.59 -4.04 -0.02 0.77 16 3 N -0.60 -9.73 2.54 -165.22 -0.42 -10.15 16 4 C 0.54 10.19 6.41 -12.44 -0.08 10.11 16 5 O -0.46 -11.06 10.75 5.29 0.06 -11.00 16 6 C -0.10 -1.68 5.60 -104.93 -0.59 -2.27 16 7 C -0.13 -1.66 7.41 -39.59 -0.29 -1.95 16 8 C -0.08 -0.98 10.03 -39.65 -0.40 -1.38 16 9 C 0.06 0.90 7.23 -84.62 -0.61 0.29 16 10 N -0.50 -6.79 11.26 -8.19 -0.09 -6.89 16 11 C 0.28 3.04 8.07 -154.90 -1.25 1.78 16 12 C -0.08 -0.44 10.51 36.01 0.38 -0.06 16 13 N -0.59 -6.63 6.23 -8.04 -0.05 -6.68 16 14 H 0.42 3.47 8.96 -40.82 -0.37 3.10 16 15 C 0.04 0.55 7.29 -84.00 -0.61 -0.07 16 16 C -0.05 -0.76 9.61 -39.10 -0.38 -1.14 16 17 C 0.14 2.43 3.62 -66.10 -0.24 2.19 16 18 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 19 C -0.16 -3.19 6.77 -24.58 -0.17 -3.35 16 20 C 0.16 4.19 5.04 -2.52 -0.01 4.18 16 21 N -0.58 -15.69 2.18 -170.07 -0.37 -16.06 16 22 C -0.19 -5.67 10.27 -15.06 -0.15 -5.83 16 23 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.02 -0.60 5.49 -17.43 -0.10 -0.70 16 25 N -0.93 -28.52 10.09 55.49 0.56 -27.96 16 26 Si 0.91 23.49 29.55 -169.99 -5.02 18.47 16 27 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 29 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 30 C 0.14 3.15 5.92 -3.06 -0.02 3.14 16 31 H 0.06 0.62 7.19 -51.93 -0.37 0.25 16 32 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 1.17 3.83 -54.29 -0.21 0.96 16 36 H 0.16 1.69 2.69 -52.49 -0.14 1.55 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.14 2.41 7.92 -52.49 -0.42 1.99 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.10 2.87 5.87 -51.93 -0.31 2.56 16 45 H 0.01 0.29 6.65 -51.93 -0.35 -0.06 16 46 H 0.24 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.04 0.93 6.17 -51.94 -0.32 0.61 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -37.70 372.40 -10.57 -48.28 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.65 Total: 1.94 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -4.20 Total: 4.43 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -0.37 Total: -67.73 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.70 -10.57 -48.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.676 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds