Wall clock time and date at job start Wed Apr 1 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47172 * 2 1 4 4 C 1.34784 * 119.99510 * 99.87572 * 3 2 1 5 5 O 1.21584 * 119.99393 * 187.20284 * 4 3 2 6 6 C 1.47598 * 120.00349 * 7.19785 * 4 3 2 7 7 C 1.40171 * 119.93987 * 329.89260 * 6 4 3 8 8 C 1.36190 * 120.52074 * 179.97438 * 7 6 4 9 9 C 1.40010 * 120.07824 * 359.97438 * 8 7 6 10 10 N 1.35554 * 133.40178 * 179.97438 * 9 8 7 11 11 C 1.30217 * 109.70440 * 180.02562 * 10 9 8 12 12 C 1.50706 * 124.92100 * 179.97438 * 11 10 9 13 13 N 1.35852 * 110.15222 * 359.97438 * 11 10 9 14 14 H 0.97000 * 126.36830 * 179.97438 * 13 11 10 15 15 C 1.38183 * 107.26751 * 0.02562 * 13 11 10 16 16 C 1.38413 * 134.02161 * 179.97438 * 15 13 11 17 17 C 1.46492 * 120.00272 * 279.87445 * 3 2 1 18 18 H 1.09004 * 110.63834 * 26.22265 * 17 3 2 19 19 C 1.55157 * 110.72353 * 262.89148 * 17 3 2 20 20 C 1.54913 * 101.58127 * 277.14092 * 19 17 3 21 21 N 1.47430 * 104.82630 * 322.98550 * 20 19 17 22 22 C 1.36942 * 125.64495 * 204.16576 * 21 20 19 23 23 H 1.07997 * 119.99789 * 179.97438 * 22 21 20 24 24 C 1.38811 * 120.00114 * 359.96031 * 22 21 20 25 25 N 1.31624 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99791 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47407 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47399 * 120.00032 * 26 24 22 29 29 H 1.48507 * 109.47079 * 239.99801 * 26 24 22 30 30 C 1.47020 * 108.70631 * 24.13382 * 21 20 19 31 31 H 1.09007 * 109.47221 * 300.00101 * 1 2 3 32 32 H 1.09003 * 109.47404 * 59.99298 * 1 2 3 33 33 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47357 * 240.00176 * 2 1 3 35 35 H 1.09004 * 109.47271 * 119.99930 * 2 1 3 36 36 H 1.08000 * 119.73708 * 359.97438 * 7 6 4 37 37 H 1.08004 * 119.95845 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47268 * 90.02301 * 12 11 10 39 39 H 1.09007 * 109.46851 * 210.01581 * 12 11 10 40 40 H 1.08997 * 109.47534 * 330.02083 * 12 11 10 41 41 H 1.08002 * 120.20862 * 0.02769 * 16 15 13 42 42 H 1.08999 * 111.00307 * 35.20496 * 19 17 3 43 43 H 1.08990 * 111.01002 * 159.05969 * 19 17 3 44 44 H 1.09003 * 110.36544 * 204.15186 * 20 19 17 45 45 H 1.08990 * 110.46230 * 81.86948 * 20 19 17 46 46 H 0.96999 * 119.99777 * 179.97438 * 25 24 22 47 47 H 1.09005 * 109.88143 * 239.52740 * 30 21 20 48 48 H 1.08989 * 109.88562 * 118.35419 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4317 1.9498 1.1500 5 8 2.7126 3.1325 1.1767 6 6 2.5432 1.1369 2.3769 7 6 1.6924 0.0395 2.5687 8 6 1.7854 -0.7190 3.6960 9 6 2.7361 -0.4069 4.6753 10 7 3.0586 -0.9600 5.8701 11 6 4.0325 -0.2896 6.4157 12 6 4.6587 -0.6086 7.7489 13 7 4.4023 0.7389 5.6089 14 1 5.1028 1.3860 5.7863 15 6 3.5940 0.6928 4.4890 16 6 3.4957 1.4604 3.3415 17 6 2.0574 2.1444 -1.2498 18 1 1.3108 1.7716 -1.9511 19 6 3.4759 2.0990 -1.8767 20 6 4.1992 3.2213 -1.0911 21 7 3.1788 4.2688 -0.9041 22 6 3.4294 5.5991 -0.6970 23 1 2.6089 6.2899 -0.5713 24 6 4.7380 6.0595 -0.6484 25 7 5.7381 5.2174 -0.8008 26 14 5.0798 7.8739 -0.3651 27 1 3.7941 8.6038 -0.2247 28 1 5.8812 8.0392 0.8741 29 1 5.8357 8.4215 -1.5201 30 6 1.8477 3.6490 -0.9777 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.9574 -0.2064 1.8166 37 1 1.1256 -1.5628 3.8343 38 1 5.4919 -1.2962 7.6038 39 1 5.0221 0.3105 8.2088 40 1 3.9152 -1.0706 8.3983 41 1 4.1526 2.3051 3.1948 42 1 3.9493 1.1328 -1.7025 43 1 3.4401 2.3283 -2.9416 44 1 5.0387 3.6082 -1.6687 45 1 4.5429 2.8499 -0.1257 46 1 6.6525 5.5392 -0.7672 47 1 1.2749 4.0962 -1.7901 48 1 1.3226 3.7850 -0.0324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034004279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:39 Heat of formation + Delta-G solvation = 100.542739 kcal Electronic energy + Delta-G solvation = -30879.842973 eV Core-core repulsion = 26937.697672 eV Total energy + Delta-G solvation = -3942.145301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.26594 -41.65747 -38.89215 -37.64765 -36.74075 -34.29770 -34.25579 -32.37208 -31.72012 -31.06863 -30.51112 -29.41265 -28.34289 -26.44216 -24.66493 -23.84226 -23.55811 -22.33598 -21.87903 -21.81584 -20.20096 -18.97523 -18.67761 -18.55088 -17.74654 -16.85049 -16.71606 -16.52929 -16.19955 -16.07634 -15.58432 -15.44834 -15.04515 -14.88064 -14.65954 -14.32532 -13.97949 -13.88217 -13.71133 -13.53680 -13.49205 -13.33956 -13.11756 -12.90323 -12.86058 -12.69409 -12.58164 -12.37909 -12.24966 -11.99012 -11.93787 -11.79639 -11.69782 -11.55512 -11.34040 -11.15173 -10.70355 -10.26351 -9.48485 -9.41926 -9.17709 -8.67346 -7.67803 -5.04877 -0.38665 0.30568 1.40458 1.42836 1.46960 1.52776 1.73351 2.07645 2.18786 2.53520 2.79715 3.08761 3.39648 3.50369 3.58221 3.85164 3.94457 3.96641 4.08976 4.17096 4.20098 4.22580 4.26210 4.34816 4.44463 4.52995 4.63548 4.68513 4.70811 4.73503 4.81028 4.90565 4.97812 5.03490 5.05719 5.07628 5.18318 5.19977 5.23887 5.29491 5.36798 5.48730 5.49687 5.69032 5.76102 5.87950 5.89465 6.32323 6.40068 6.57562 6.75216 7.21821 7.44709 7.93383 8.58350 9.34946 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.003791 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.731133 B = 7383.191037 C = 9403.247536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 N -0.596 5.596 4 C 0.530 3.470 5 O -0.525 6.525 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.073 4.073 9 C 0.053 3.947 10 N -0.526 5.526 11 C 0.296 3.704 12 C -0.076 4.076 13 N -0.592 5.592 14 H 0.436 0.564 15 C 0.020 3.980 16 C -0.065 4.065 17 C 0.149 3.851 18 H 0.131 0.869 19 C -0.145 4.145 20 C 0.170 3.830 21 N -0.594 5.594 22 C -0.208 4.208 23 H 0.067 0.933 24 C -0.078 4.078 25 N -0.952 5.952 26 Si 0.974 3.026 27 H -0.271 1.271 28 H -0.299 1.299 29 H -0.288 1.288 30 C 0.135 3.865 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.192 0.808 37 H 0.164 0.836 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.060 0.940 45 H -0.030 1.030 46 H 0.239 0.761 47 H 0.023 0.977 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 -19.944 10.909 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.058 4.058 3 N -0.330 5.330 4 C 0.319 3.681 5 O -0.401 6.401 6 C -0.127 4.127 7 C -0.136 4.136 8 C -0.092 4.092 9 C -0.067 4.067 10 N -0.248 5.248 11 C 0.030 3.970 12 C -0.134 4.134 13 N -0.204 5.204 14 H 0.277 0.723 15 C -0.090 4.090 16 C -0.087 4.087 17 C 0.045 3.955 18 H 0.148 0.852 19 C -0.185 4.185 20 C 0.045 3.955 21 N -0.318 5.318 22 C -0.338 4.338 23 H 0.085 0.915 24 C -0.269 4.269 25 N -0.605 5.605 26 Si 0.804 3.196 27 H -0.196 1.196 28 H -0.227 1.227 29 H -0.215 1.215 30 C 0.009 3.991 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.209 0.791 37 H 0.182 0.818 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.078 0.922 45 H -0.012 1.012 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.002 -19.888 11.255 24.213 hybrid contribution 1.566 2.664 0.018 3.090 sum -6.436 -17.225 11.273 21.568 Atomic orbital electron populations 1.22273 0.93992 1.04327 1.02613 1.22787 0.95845 0.81021 1.06153 1.47753 1.64114 1.14943 1.06157 1.18684 0.77919 0.87262 0.84279 1.91130 1.47440 1.16549 1.84982 1.19713 0.99582 0.98576 0.94876 1.21982 1.00128 0.92812 0.98646 1.20290 0.97012 1.01268 0.90667 1.19659 0.98339 0.93987 0.94700 1.70422 1.16357 1.29851 1.08192 1.24635 0.92259 0.84344 0.95753 1.20663 1.01831 1.04873 0.86025 1.43125 1.32554 1.28746 1.16009 0.72309 1.18712 0.97923 1.01048 0.91292 1.19867 0.99202 0.98264 0.91368 1.22009 0.97677 0.90493 0.85273 0.85181 1.23315 0.96400 0.98926 0.99851 1.21485 0.92518 0.87046 0.94475 1.44381 1.01194 1.03088 1.83124 1.19360 0.91923 0.83978 1.38541 0.91546 1.25475 0.95385 1.01741 1.04262 1.70111 0.97582 1.33124 1.59643 0.85044 0.77553 0.80365 0.76687 1.19595 1.22669 1.21451 1.21562 0.88474 0.92117 0.96944 0.92756 0.91731 0.87930 0.88692 0.86592 0.79140 0.81801 0.87400 0.87715 0.87574 0.87886 0.90357 0.90076 0.92168 1.01172 0.95098 0.95923 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.16 71.98 0.66 -1.78 16 2 C 0.06 1.19 5.59 86.38 0.48 1.67 16 3 N -0.60 -18.63 2.54 -794.90 -2.02 -20.65 16 4 C 0.53 21.02 6.41 86.71 0.56 21.58 16 5 O -0.53 -27.50 10.75 -3.98 -0.04 -27.54 16 6 C -0.12 -4.07 5.60 -20.06 -0.11 -4.18 16 7 C -0.12 -2.76 7.41 22.26 0.16 -2.60 16 8 C -0.07 -1.68 10.03 22.22 0.22 -1.45 16 9 C 0.05 1.46 7.23 39.60 0.29 1.75 16 10 N -0.53 -13.54 11.26 -179.81 -2.03 -15.57 16 11 C 0.30 5.90 8.07 137.95 1.11 7.01 16 12 C -0.08 -0.65 10.51 71.24 0.75 0.10 16 13 N -0.59 -13.14 6.23 -179.34 -1.12 -14.26 16 14 H 0.44 7.23 8.96 -92.71 -0.83 6.39 16 15 C 0.02 0.59 7.29 38.79 0.28 0.87 16 16 C -0.07 -2.28 9.61 22.58 0.22 -2.07 16 17 C 0.15 5.12 3.62 46.18 0.17 5.29 16 18 H 0.13 3.28 7.88 -2.39 -0.02 3.27 16 19 C -0.15 -5.63 6.77 31.99 0.22 -5.41 16 20 C 0.17 9.24 5.04 86.86 0.44 9.68 16 21 N -0.59 -33.77 2.18 -691.98 -1.51 -35.28 16 22 C -0.21 -12.99 10.27 84.03 0.86 -12.12 16 23 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.84 5.49 84.86 0.47 -4.38 16 25 N -0.95 -61.88 10.09 21.65 0.22 -61.66 16 26 Si 0.97 50.28 29.55 68.60 2.03 52.30 16 27 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 29 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 30 C 0.13 6.20 5.92 86.73 0.51 6.72 16 31 H 0.05 0.88 7.19 -2.38 -0.02 0.87 16 32 H 0.06 0.95 7.94 -2.39 -0.02 0.93 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 2.11 3.83 -4.61 -0.02 2.09 16 36 H 0.19 3.36 2.69 -2.91 -0.01 3.35 16 37 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 4.18 7.92 -2.91 -0.02 4.16 16 42 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.06 3.72 5.87 -2.39 -0.01 3.70 16 45 H -0.03 -1.81 6.65 -2.39 -0.02 -1.83 16 46 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.02 0.94 6.17 -2.39 -0.01 0.93 16 Total: -1.00 -90.76 372.40 2.99 -87.77 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.17 Total: 14.22 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 7.29 Total: 20.67 kcal Atomic # 7 Polarization: -140.97 SS G_CDS: -6.45 Total: -147.43 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.04 Total: -27.54 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.30 kcal Total: -90.76 2.99 -87.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.317 kcal (2) G-P(sol) polarization free energy of solvation -90.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds