Wall clock time and date at job start Wed Apr 1 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47036 * 2 1 4 4 C 1.34775 * 120.00133 * 264.77299 * 3 2 1 5 5 O 1.21735 * 119.99755 * 184.59672 * 4 3 2 6 6 C 1.46426 * 120.00036 * 4.59327 * 4 3 2 7 7 C 1.40109 * 126.85562 * 93.29249 * 6 4 3 8 8 C 1.40060 * 136.36363 * 0.77402 * 7 6 4 9 9 C 1.36068 * 119.46802 * 179.58654 * 8 7 6 10 10 C 1.39484 * 121.57008 * 359.70473 * 9 8 7 11 11 C 1.35820 * 121.84030 * 0.02617 * 10 9 8 12 12 C 1.40922 * 119.54476 * 359.97438 * 11 10 9 13 13 N 1.32148 * 135.42449 * 180.02562 * 12 11 10 14 14 N 1.28442 * 111.39425 * 179.97438 * 13 12 11 15 15 C 1.46498 * 124.15775 * 179.97438 * 14 13 12 16 16 C 1.46499 * 119.99484 * 84.77436 * 3 2 1 17 17 H 1.08999 * 110.92130 * 8.60336 * 16 3 2 18 18 C 1.55160 * 111.00098 * 244.69786 * 16 3 2 19 19 C 1.54314 * 102.94742 * 277.43256 * 18 16 3 20 20 N 1.47022 * 107.27191 * 337.80488 * 19 18 16 21 21 C 1.36933 * 125.65182 * 178.90460 * 20 19 18 22 22 H 1.07999 * 120.00191 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00227 * 0.02562 * 21 20 19 24 24 N 1.31618 * 119.99571 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47067 * 90.00376 * 25 23 21 27 27 H 1.48504 * 109.46794 * 210.00072 * 25 23 21 28 28 H 1.48492 * 109.47312 * 330.00264 * 25 23 21 29 29 C 1.47422 * 108.70081 * 358.94274 * 20 19 18 30 30 H 1.09007 * 109.46764 * 174.83140 * 1 2 3 31 31 H 1.08995 * 109.47392 * 294.82433 * 1 2 3 32 32 H 1.08999 * 109.47318 * 54.83133 * 1 2 3 33 33 H 1.09000 * 109.47314 * 240.00245 * 2 1 3 34 34 H 1.08999 * 109.47298 * 120.00411 * 2 1 3 35 35 H 1.08005 * 120.26841 * 359.30153 * 8 7 6 36 36 H 1.08004 * 119.21916 * 179.73255 * 9 8 7 37 37 H 1.08003 * 119.07825 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.22476 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47449 * 274.65046 * 15 14 13 40 40 H 1.09005 * 109.47088 * 34.65124 * 15 14 13 41 41 H 1.09000 * 109.47543 * 154.65023 * 15 14 13 42 42 H 1.09000 * 110.71859 * 159.06307 * 18 16 3 43 43 H 1.09000 * 110.71749 * 35.79594 * 18 16 3 44 44 H 1.08997 * 109.88663 * 97.22228 * 19 18 16 45 45 H 1.08998 * 109.88358 * 218.39118 * 19 18 16 46 46 H 0.97006 * 120.00289 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.37243 * 142.96531 * 29 20 19 48 48 H 1.09000 * 110.36796 * 265.28686 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3432 1.9811 -1.1623 5 8 2.8274 3.0980 -1.1562 6 6 2.1137 1.2895 -2.4324 7 6 0.9803 1.3881 -3.2502 8 6 -0.2309 2.0908 -3.2235 9 6 -1.1203 1.9305 -4.2407 10 6 -0.8536 1.0851 -5.3176 11 6 0.3041 0.3803 -5.4056 12 6 1.2695 0.4997 -4.3859 13 7 2.4631 -0.0180 -4.1545 14 7 2.9576 0.4187 -3.0524 15 6 4.2672 0.0263 -2.5259 16 6 2.1535 2.1102 1.2635 17 1 1.9985 1.4467 2.1142 18 6 1.1805 3.3178 1.3156 19 6 1.9431 4.4101 0.5369 20 7 3.3696 4.0558 0.5718 21 6 4.3818 4.7604 -0.0233 22 1 5.4018 4.4154 0.0606 23 6 4.0969 5.9180 -0.7345 24 7 2.8539 6.3386 -0.8363 25 14 5.4778 6.8794 -1.5457 26 1 5.6844 6.3779 -2.9281 27 1 5.1184 8.3197 -1.5902 28 1 6.7281 6.7052 -0.7639 29 6 3.5296 2.8159 1.3530 30 1 -0.3633 -1.0236 -0.0926 31 1 -0.3634 0.4314 0.9327 32 1 -0.3634 0.5919 -0.8401 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 -0.4592 2.7511 -2.3998 36 1 -2.0550 2.4710 -4.2138 37 1 -1.5881 0.9883 -6.1034 38 1 0.4838 -0.2665 -6.2516 39 1 4.1681 -0.8985 -1.9575 40 1 4.9600 -0.1280 -3.3531 41 1 4.6479 0.8136 -1.8752 42 1 1.0066 3.6287 2.3458 43 1 0.2399 3.0767 0.8205 44 1 1.5942 4.4416 -0.4953 45 1 1.7902 5.3792 1.0118 46 1 2.6547 7.1473 -1.3336 47 1 4.3064 2.1890 0.9150 48 1 3.7695 3.0493 2.3903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034006902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:50 Heat of formation + Delta-G solvation = 152.551371 kcal Electronic energy + Delta-G solvation = -32375.886848 eV Core-core repulsion = 28435.996811 eV Total energy + Delta-G solvation = -3939.890037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.26066 -39.72580 -37.51628 -36.13385 -35.35668 -32.63108 -32.21855 -31.59599 -30.06225 -29.35190 -28.83671 -27.44088 -27.00449 -24.45280 -23.63057 -23.03749 -22.28606 -21.87484 -20.10986 -19.86324 -18.30709 -17.36039 -17.19022 -16.57840 -16.38190 -16.10239 -15.44822 -15.06580 -14.57867 -14.41738 -13.95799 -13.90731 -13.73033 -13.60974 -13.43706 -13.20343 -12.96970 -12.87173 -12.52960 -11.94572 -11.87028 -11.70014 -11.64970 -11.59087 -11.53591 -11.49721 -11.12790 -10.77447 -10.72647 -10.71622 -10.13935 -10.00430 -9.98312 -9.96096 -9.69924 -9.45451 -8.87819 -8.49445 -8.46553 -7.91235 -7.46759 -6.30504 -5.44377 -2.69944 0.78928 1.88108 2.34350 2.59898 3.20943 3.42987 3.51905 3.55900 3.58277 4.02520 4.29716 4.58384 4.69644 4.93569 4.98154 4.99202 5.10790 5.21289 5.22222 5.33811 5.38648 5.41995 5.44160 5.56962 5.59431 5.65582 5.72445 5.73279 5.84289 5.87334 5.87474 6.01112 6.21098 6.23098 6.25046 6.48010 6.53821 6.57775 6.59037 6.63819 6.70611 6.77119 6.84687 7.11449 7.19645 7.73436 7.83708 7.86641 8.08486 8.15045 8.51713 8.91019 9.47483 10.09801 10.75142 11.68624 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.005083 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.227260 B = 5507.132769 C = 6273.039873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.601 5.601 4 C 0.526 3.474 5 O -0.371 6.371 6 C 0.020 3.980 7 C -0.139 4.139 8 C -0.044 4.044 9 C -0.146 4.146 10 C -0.096 4.096 11 C -0.088 4.088 12 C 0.062 3.938 13 N -0.308 5.308 14 N -0.228 5.228 15 C 0.079 3.921 16 C 0.134 3.866 17 H 0.085 0.915 18 C -0.160 4.160 19 C 0.189 3.811 20 N -0.568 5.568 21 C -0.198 4.198 22 H 0.066 0.934 23 C -0.004 4.004 24 N -0.917 5.917 25 Si 0.898 3.102 26 H -0.294 1.294 27 H -0.294 1.294 28 H -0.285 1.285 29 C 0.129 3.871 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.245 0.755 47 H 0.033 0.967 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -16.740 -0.495 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.340 5.340 4 C 0.306 3.694 5 O -0.232 6.232 6 C -0.117 4.117 7 C -0.148 4.148 8 C -0.064 4.064 9 C -0.165 4.165 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.084 4.084 13 N -0.143 5.143 14 N -0.011 5.011 15 C -0.061 4.061 16 C 0.030 3.970 17 H 0.103 0.897 18 C -0.200 4.200 19 C 0.065 3.935 20 N -0.293 5.293 21 C -0.327 4.327 22 H 0.084 0.916 23 C -0.199 4.199 24 N -0.566 5.566 25 Si 0.730 3.270 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.212 1.212 29 C 0.002 3.998 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.337 -16.646 -1.033 17.511 hybrid contribution 0.143 0.873 -0.324 0.942 sum -5.194 -15.774 -1.357 16.662 Atomic orbital electron populations 1.22211 0.96079 1.01693 1.02787 1.21377 0.94640 0.83246 1.01748 1.47766 1.67390 1.13110 1.05720 1.17262 0.82977 0.87577 0.81591 1.91784 1.33734 1.13855 1.83794 1.21780 0.92522 0.98680 0.98726 1.19317 0.95629 1.03650 0.96192 1.20103 0.91086 0.96646 0.98574 1.20557 1.00013 1.01051 0.94898 1.20539 0.96585 0.96573 0.98164 1.19772 0.92282 1.01846 0.96997 1.20557 0.92584 0.98294 0.96937 1.73351 1.12059 1.25094 1.03822 1.45680 1.14697 1.27269 1.13421 1.22334 0.79757 1.02858 1.01142 1.22348 0.98051 0.92771 0.83846 0.89667 1.23403 0.98245 0.97450 1.00872 1.21140 0.82773 0.91910 0.97663 1.44153 1.03188 1.23601 1.58375 1.18738 0.86502 1.02373 1.25081 0.91573 1.24568 0.95825 0.98587 1.00938 1.69930 1.16143 1.24300 1.46221 0.86325 0.81490 0.79558 0.79623 1.22231 1.22013 1.21155 1.21786 0.93281 0.89577 0.95182 0.92326 0.92230 0.91997 0.91830 0.90871 0.85967 0.86118 0.85968 0.85852 0.89274 0.88115 0.87913 0.91872 0.92298 0.92316 0.95094 0.94439 0.94920 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.23 37.16 0.38 -1.50 16 2 C 0.11 1.34 5.97 -4.04 -0.02 1.32 16 3 N -0.60 -9.35 2.56 -165.29 -0.42 -9.77 16 4 C 0.53 10.03 6.18 -12.97 -0.08 9.95 16 5 O -0.37 -9.06 9.02 5.16 0.05 -9.01 16 6 C 0.02 0.36 4.86 -81.93 -0.40 -0.04 16 7 C -0.14 -2.46 6.29 -104.93 -0.66 -3.12 16 8 C -0.04 -0.71 9.71 -39.68 -0.39 -1.09 16 9 C -0.15 -1.96 9.92 -39.90 -0.40 -2.35 16 10 C -0.10 -1.19 9.89 -39.98 -0.40 -1.59 16 11 C -0.09 -1.22 10.08 -39.43 -0.40 -1.62 16 12 C 0.06 1.04 7.53 -83.14 -0.63 0.41 16 13 N -0.31 -5.16 11.88 33.21 0.39 -4.77 16 14 N -0.23 -3.64 3.48 -63.75 -0.22 -3.86 16 15 C 0.08 0.94 11.12 59.85 0.67 1.60 16 16 C 0.13 2.17 3.81 -65.78 -0.25 1.92 16 17 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 18 C -0.16 -2.93 6.50 -24.90 -0.16 -3.09 16 19 C 0.19 4.64 4.20 -3.07 -0.01 4.63 16 20 N -0.57 -14.29 1.75 -170.08 -0.30 -14.59 16 21 C -0.20 -5.61 8.82 -15.06 -0.13 -5.75 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 24 N -0.92 -28.00 10.31 55.49 0.57 -27.43 16 25 Si 0.90 23.35 29.55 -169.99 -5.02 18.33 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C 0.13 2.58 6.24 -2.53 -0.02 2.56 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 34 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 35 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.34 7.56 -51.93 -0.39 0.94 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.65 5.70 -51.93 -0.30 1.35 16 45 H 0.03 0.86 7.51 -51.93 -0.39 0.47 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -35.27 381.16 -9.46 -44.73 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.27 Total: -1.43 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.99 Total: 2.05 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.03 Total: -60.42 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.27 -9.46 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034006902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.285 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds