Wall clock time and date at job start Wed Apr 1 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47223 * 2 1 4 4 C 1.34782 * 120.00055 * 83.39420 * 3 2 1 5 5 O 1.21585 * 119.99774 * 184.05196 * 4 3 2 6 6 C 1.47588 * 119.99701 * 4.04865 * 4 3 2 7 7 C 1.36576 * 125.91550 * 173.61622 * 6 4 3 8 8 N 1.36197 * 107.09269 * 180.02562 * 7 6 4 9 9 C 1.37265 * 107.34095 * 0.02562 * 8 7 6 10 10 C 1.41191 * 119.57635 * 179.97438 * 9 8 7 11 11 C 1.35898 * 119.34478 * 359.97438 * 10 9 8 12 12 C 1.40577 * 119.72848 * 0.02562 * 11 10 9 13 13 C 1.34840 * 120.34285 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.67807 * 179.97438 * 13 12 11 15 15 N 1.32229 * 108.37979 * 0.22011 * 9 8 7 16 16 C 1.46506 * 120.00015 * 263.39378 * 3 2 1 17 17 H 1.08995 * 110.88238 * 356.12092 * 16 3 2 18 18 C 1.55162 * 111.00318 * 119.99728 * 16 3 2 19 19 C 1.54323 * 102.93852 * 153.57318 * 18 16 3 20 20 N 1.47012 * 107.27578 * 337.81327 * 19 18 16 21 21 C 1.36941 * 125.65403 * 178.98823 * 20 19 18 22 22 H 1.07994 * 120.00540 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99350 * 359.96682 * 21 20 19 24 24 N 1.31621 * 120.00284 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99810 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47181 * 60.00067 * 25 23 21 27 27 H 1.48502 * 109.46891 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47020 * 299.99974 * 25 23 21 29 29 C 1.47431 * 108.70519 * 358.93683 * 20 19 18 30 30 H 1.09003 * 109.46639 * 300.00149 * 1 2 3 31 31 H 1.09001 * 109.47274 * 59.99700 * 1 2 3 32 32 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46897 * 240.00582 * 2 1 3 34 34 H 1.09002 * 109.47453 * 119.99784 * 2 1 3 35 35 H 1.08003 * 126.45206 * 0.03205 * 7 6 4 36 36 H 1.07992 * 120.32705 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.13397 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.82339 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.47091 * 269.97743 * 14 13 12 40 40 H 1.08995 * 109.47647 * 29.97941 * 14 13 12 41 41 H 1.09000 * 109.47194 * 149.98049 * 14 13 12 42 42 H 1.08997 * 110.72057 * 271.93884 * 18 16 3 43 43 H 1.09000 * 110.71490 * 35.21461 * 18 16 3 44 44 H 1.09004 * 109.88105 * 97.22814 * 19 18 16 45 45 H 1.09001 * 109.88253 * 218.39034 * 19 18 16 46 46 H 0.96998 * 120.00033 * 179.97438 * 24 23 21 47 47 H 1.08998 * 110.36391 * 265.29594 * 29 20 19 48 48 H 1.08996 * 110.37005 * 142.97213 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1164 2.0614 1.1595 5 8 2.4511 3.2302 1.1522 6 6 1.8174 1.3873 2.4379 7 6 1.9938 1.9180 3.6839 8 7 1.5986 0.9727 4.5813 9 6 1.1864 -0.1237 3.8657 10 6 0.7195 -1.2671 4.5499 11 6 0.6864 -1.2631 5.9085 12 6 1.1154 -0.1246 6.6128 13 6 1.5582 0.9613 5.9474 14 6 2.0139 2.1739 6.7176 15 7 1.3295 0.1408 2.5781 16 6 2.4002 2.0232 -1.2604 17 1 2.3277 1.3216 -2.0913 18 6 1.5400 3.2875 -1.5234 19 6 2.4604 4.1535 -2.4090 20 7 3.8409 3.7074 -2.1713 21 6 4.9588 4.2109 -2.7813 22 1 5.9328 3.8139 -2.5366 23 6 4.8398 5.2317 -3.7145 24 7 3.6527 5.7159 -4.0125 25 14 6.3645 5.9182 -4.5473 26 1 7.0545 4.8325 -5.2892 27 1 5.9702 6.9923 -5.4939 28 1 7.2808 6.4759 -3.5203 29 6 3.8228 2.6289 -1.1663 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 2.3749 2.9019 3.9142 36 1 0.3918 -2.1363 3.9991 37 1 0.3320 -2.1309 6.4448 38 1 1.0902 -0.1199 7.6926 39 1 1.1674 2.8414 6.8785 40 1 2.4188 1.8619 7.6803 41 1 2.7853 2.6954 6.1509 42 1 0.6253 3.0276 -2.0561 43 1 1.3111 3.7994 -0.5887 44 1 2.2018 4.0153 -3.4589 45 1 2.3577 5.2035 -2.1350 46 1 3.5697 6.4295 -4.6643 47 1 3.9968 3.0357 -0.1702 48 1 4.5727 1.8749 -1.4054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034039463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:00 Heat of formation + Delta-G solvation = 104.943489 kcal Electronic energy + Delta-G solvation = -30248.308473 eV Core-core repulsion = 26306.354004 eV Total energy + Delta-G solvation = -3941.954470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.15141 -39.86251 -37.83766 -36.54663 -35.35505 -34.47624 -32.34640 -31.49976 -30.07146 -29.67069 -28.81963 -27.66149 -27.04578 -24.89569 -23.92587 -23.04054 -22.91340 -21.64416 -20.66390 -19.89796 -18.89568 -17.92414 -16.98114 -16.80421 -16.65638 -16.36639 -15.69779 -15.20314 -14.62790 -14.61211 -14.49512 -14.23527 -14.03425 -13.75534 -13.56807 -13.55202 -13.17582 -12.98097 -12.73566 -12.59432 -12.08595 -11.97237 -11.90752 -11.70655 -11.60963 -11.58807 -11.40061 -10.91935 -10.80056 -10.75286 -10.52286 -10.29453 -10.09848 -10.00917 -9.69584 -9.50633 -9.13992 -9.06060 -8.46390 -8.20288 -8.04095 -6.62181 -5.55526 -2.87733 0.31107 0.94321 2.00775 2.16915 3.08598 3.27050 3.50124 3.53581 3.55438 3.64563 3.80194 3.97600 4.32560 4.36361 4.62770 4.64053 4.81276 4.92039 4.99834 5.10047 5.14920 5.29626 5.34173 5.47863 5.50013 5.59321 5.65754 5.68454 5.72892 5.77799 5.78667 5.90035 5.97883 6.01349 6.11034 6.14485 6.26632 6.46451 6.54601 6.65378 6.70383 6.74179 6.87266 6.89134 7.37524 7.45403 7.70676 7.80478 7.85652 7.99399 8.41791 8.53831 9.37958 9.98469 10.66339 11.56174 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002599 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.481265 B =10770.615371 C =11581.797134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.591 3.409 5 O -0.514 6.514 6 C 0.019 3.981 7 C -0.022 4.022 8 N -0.362 5.362 9 C 0.222 3.778 10 C -0.081 4.081 11 C -0.099 4.099 12 C -0.147 4.147 13 C 0.091 3.909 14 C -0.120 4.120 15 N -0.456 5.456 16 C 0.131 3.869 17 H 0.092 0.908 18 C -0.153 4.153 19 C 0.186 3.814 20 N -0.602 5.602 21 C -0.221 4.221 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.126 3.874 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.194 0.806 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.251 0.749 47 H 0.045 0.955 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -16.377 23.912 30.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.317 5.317 4 C 0.376 3.624 5 O -0.389 6.389 6 C -0.113 4.113 7 C -0.157 4.157 8 N -0.034 5.034 9 C -0.023 4.023 10 C -0.102 4.102 11 C -0.123 4.123 12 C -0.168 4.168 13 C -0.012 4.012 14 C -0.177 4.177 15 N -0.178 5.178 16 C 0.028 3.972 17 H 0.110 0.890 18 C -0.192 4.192 19 C 0.061 3.939 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.211 0.789 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.178 -16.029 23.030 29.522 hybrid contribution 0.839 0.826 0.145 1.186 sum -8.339 -15.203 23.175 28.944 Atomic orbital electron populations 1.22012 0.96133 1.01339 1.01595 1.21939 0.94638 0.81983 1.03768 1.47788 1.63467 1.14222 1.06221 1.16926 0.78205 0.85499 0.81721 1.90858 1.46796 1.15010 1.86283 1.20839 1.04644 0.91971 0.93891 1.22566 1.09112 0.96590 0.87388 1.42738 1.41145 1.13868 1.05686 1.21189 1.03836 0.89727 0.87544 1.20302 1.00478 0.95597 0.93778 1.21025 0.99186 0.98583 0.93514 1.20618 1.02926 0.92309 1.00930 1.20356 1.01323 0.98871 0.80621 1.20975 1.02607 0.94072 1.00080 1.71101 1.20022 1.14098 1.12583 1.22458 0.97098 0.94416 0.83273 0.88956 1.23243 0.98050 0.96513 1.01441 1.21045 0.81807 0.95404 0.95677 1.44318 1.03289 1.39354 1.45894 1.19006 0.85583 1.13973 1.16403 0.90645 1.24784 0.96817 0.99158 0.99941 1.69969 1.20636 1.29859 1.36686 0.86203 0.82120 0.78415 0.79047 1.21291 1.21688 1.21297 1.21877 0.92525 0.91010 0.94724 0.92540 0.93296 0.92297 0.91366 0.87432 0.78938 0.83043 0.83972 0.83276 0.89524 0.89082 0.90321 0.92758 0.90715 0.93842 0.94015 0.93868 0.93715 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.71 37.16 0.36 -1.56 16 2 C 0.10 1.37 5.73 -4.04 -0.02 1.35 16 3 N -0.59 -10.09 2.58 -164.86 -0.42 -10.51 16 4 C 0.59 10.75 6.89 -12.44 -0.09 10.67 16 5 O -0.51 -11.09 12.93 5.29 0.07 -11.02 16 6 C 0.02 0.29 6.46 -83.45 -0.54 -0.25 16 7 C -0.02 -0.28 10.79 -16.21 -0.17 -0.46 16 8 N -0.36 -3.93 2.93 -58.17 -0.17 -4.10 16 9 C 0.22 2.54 7.79 -156.05 -1.22 1.33 16 10 C -0.08 -0.65 10.11 -39.30 -0.40 -1.04 16 11 C -0.10 -0.56 10.06 -39.54 -0.40 -0.96 16 12 C -0.15 -0.82 9.58 -39.91 -0.38 -1.21 16 13 C 0.09 0.69 6.78 -81.64 -0.55 0.14 16 14 C -0.12 -0.59 9.84 36.01 0.35 -0.24 16 15 N -0.46 -6.17 6.54 -9.35 -0.06 -6.23 16 16 C 0.13 2.61 3.55 -65.78 -0.23 2.38 16 17 H 0.09 1.73 7.78 -51.93 -0.40 1.32 16 18 C -0.15 -3.33 6.33 -24.89 -0.16 -3.49 16 19 C 0.19 4.97 5.37 -3.07 -0.02 4.95 16 20 N -0.60 -16.84 3.39 -170.08 -0.58 -17.41 16 21 C -0.22 -6.60 10.28 -15.06 -0.15 -6.75 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -28.63 10.31 55.49 0.57 -28.05 16 25 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 C 0.13 2.97 6.58 -2.53 -0.02 2.95 16 30 H 0.06 0.78 7.03 -51.93 -0.37 0.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 34 H 0.11 1.47 5.30 -51.93 -0.28 1.20 16 35 H 0.19 2.19 7.77 -52.48 -0.41 1.78 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.15 0.38 8.06 -52.48 -0.42 -0.05 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 41 H 0.08 0.44 7.46 -51.93 -0.39 0.05 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.71 6.11 -51.93 -0.32 1.39 16 44 H 0.04 1.24 7.38 -51.93 -0.38 0.86 16 45 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.05 1.14 5.67 -51.93 -0.29 0.84 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -36.35 379.81 -10.60 -46.95 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.98 Total: -0.91 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -3.73 Total: 7.38 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.66 Total: -66.30 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.35 -10.60 -46.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034039463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.892 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds