Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.28444 * 124.15977 * 2 1 4 4 C 1.32133 * 111.39310 * 180.24808 * 3 2 1 5 5 C 1.40935 * 135.42252 * 179.75886 * 4 3 2 6 6 C 1.35817 * 119.54732 * 180.02562 * 5 4 3 7 7 C 1.39488 * 121.83728 * 359.95868 * 6 5 4 8 8 C 1.36070 * 121.57060 * 0.02562 * 7 6 5 9 9 C 1.40058 * 119.47105 * 0.02562 * 8 7 6 10 10 C 1.36197 * 124.15736 * 179.81094 * 2 1 3 11 11 C 1.46426 * 126.85320 * 0.03130 * 10 2 1 12 12 O 1.21730 * 119.99650 * 85.09412 * 11 10 2 13 13 N 1.34776 * 120.00317 * 265.08468 * 11 10 2 14 14 C 1.46501 * 120.00105 * 174.95407 * 13 11 10 15 15 H 1.09001 * 109.25972 * 35.32203 * 14 13 11 16 16 C 1.50880 * 109.36362 * 154.99869 * 14 13 11 17 17 C 1.52567 * 109.35677 * 212.07663 * 16 14 13 18 18 C 1.47094 * 114.32588 * 274.98984 * 17 16 14 19 19 C 1.54865 * 110.32123 * 62.80650 * 18 17 16 20 20 N 1.44573 * 109.59738 * 288.73028 * 19 18 17 21 21 C 1.36947 * 118.64340 * 270.70660 * 20 19 18 22 22 H 1.07999 * 119.99724 * 149.21961 * 21 20 19 23 23 C 1.38811 * 119.99685 * 329.22137 * 21 20 19 24 24 N 1.31624 * 119.99855 * 320.22199 * 23 21 20 25 25 Si 1.86791 * 119.99876 * 140.23199 * 23 21 20 26 26 H 1.48502 * 109.46956 * 269.99551 * 25 23 21 27 27 H 1.48507 * 109.47377 * 149.99582 * 25 23 21 28 28 H 1.48501 * 109.47498 * 29.99322 * 25 23 21 29 29 C 1.47605 * 122.71651 * 90.98695 * 20 19 18 30 30 H 1.09002 * 109.46517 * 266.84561 * 1 2 3 31 31 H 1.08994 * 109.46869 * 26.84089 * 1 2 3 32 32 H 1.08994 * 109.47158 * 146.84501 * 1 2 3 33 33 H 1.08005 * 120.22935 * 0.02961 * 5 4 3 34 34 H 1.08001 * 119.08233 * 179.97438 * 6 5 4 35 35 H 1.08007 * 119.21436 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.26257 * 179.97438 * 8 7 6 37 37 H 0.96996 * 119.99722 * 354.95903 * 13 11 10 38 38 H 1.09002 * 109.48552 * 92.11344 * 16 14 13 39 39 H 1.08998 * 109.49197 * 332.04861 * 16 14 13 40 40 H 1.09006 * 108.51356 * 153.73871 * 17 16 14 41 41 H 1.08995 * 108.39142 * 36.15892 * 17 16 14 42 42 H 1.08998 * 109.32916 * 302.53872 * 18 17 16 43 43 H 1.09007 * 109.18326 * 182.97391 * 18 17 16 44 44 H 1.09000 * 109.44778 * 168.69173 * 19 18 17 45 45 H 1.08993 * 109.42890 * 48.75627 * 19 18 17 46 46 H 0.97000 * 120.00090 * 353.14468 * 24 23 21 47 47 H 1.09004 * 108.94659 * 78.29207 * 29 20 19 48 48 H 1.08993 * 108.95294 * 196.92572 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1863 1.0628 0.0000 4 6 3.4750 0.7709 -0.0053 5 6 4.6726 1.5138 -0.0120 6 6 5.8646 0.8627 -0.0168 7 6 5.9423 -0.5300 -0.0145 8 6 4.8246 -1.3059 -0.0078 9 6 3.5632 -0.6971 -0.0037 10 6 2.2298 -1.1270 0.0037 11 6 1.7533 -2.5116 0.0076 12 8 1.4705 -3.0609 -1.0412 13 7 1.6281 -3.1779 1.1725 14 6 1.0478 -4.5230 1.1882 15 1 1.3450 -5.0534 0.2835 16 6 1.5538 -5.2720 2.3962 17 6 1.6589 -6.7572 2.0630 18 6 0.4055 -7.5072 2.2364 19 6 -0.6791 -6.9732 1.2686 20 7 -1.1172 -5.6663 1.7048 21 6 -2.1601 -5.5847 2.5886 22 1 -2.2061 -4.7696 3.2957 23 6 -3.1579 -6.5495 2.5757 24 7 -3.6015 -7.0221 1.4301 25 14 -3.8712 -7.1770 4.1839 26 1 -3.0877 -8.3498 4.6488 27 1 -5.2858 -7.5781 3.9750 28 1 -3.8074 -6.1022 5.2066 29 6 -0.4908 -4.4160 1.2323 30 1 -0.3632 -0.0566 1.0262 31 1 -0.3633 0.9169 -0.4640 32 1 -0.3633 -0.8603 -0.5620 33 1 4.6428 2.5934 -0.0132 34 1 6.7777 1.4395 -0.0223 35 1 6.9129 -1.0037 -0.0181 36 1 4.9094 -2.3825 -0.0066 37 1 1.9221 -2.7668 2.0003 38 1 0.8610 -5.1337 3.2263 39 1 2.5364 -4.8913 2.6750 40 1 2.4202 -7.2026 2.7035 41 1 1.9803 -6.8550 1.0261 42 1 0.0583 -7.3971 3.2637 43 1 0.5874 -8.5616 2.0280 44 1 -1.5279 -7.6570 1.2618 45 1 -0.2639 -6.9000 0.2635 46 1 -3.3046 -6.6276 0.5951 47 1 -0.8621 -4.1900 0.2327 48 1 -0.7702 -3.6043 1.9038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034471807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = 86.162721 kcal Electronic energy + Delta-G solvation = -30249.347222 eV Core-core repulsion = 26306.578357 eV Total energy + Delta-G solvation = -3942.768865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.65891 -39.75555 -37.95319 -37.78858 -34.88067 -33.57175 -32.99994 -32.25364 -31.11561 -30.32653 -29.34984 -27.70713 -26.00501 -24.69356 -23.95475 -23.10866 -22.54871 -22.02931 -20.45972 -19.65414 -19.35752 -18.01771 -17.66348 -17.24075 -16.74396 -16.44329 -15.93745 -15.40990 -15.13501 -14.54814 -14.37852 -14.27854 -14.12691 -13.77828 -13.61068 -13.48797 -13.36365 -13.18206 -13.09957 -12.59744 -12.38155 -12.07327 -11.94046 -11.90954 -11.80080 -11.32813 -10.79073 -10.73848 -10.53407 -10.49731 -10.45132 -10.25152 -10.13915 -10.08806 -10.06150 -9.89614 -9.51286 -9.05928 -8.86250 -8.26157 -7.93409 -6.91512 -6.17510 -3.29071 0.36181 1.45850 1.81056 2.17597 2.55363 3.07951 3.47664 3.49990 3.62799 3.66421 3.89517 4.31111 4.56990 4.69451 4.74324 4.80128 4.85910 4.97324 5.02451 5.13592 5.15579 5.16998 5.24199 5.32341 5.46483 5.48018 5.50069 5.73165 5.77628 5.81923 5.93800 6.16741 6.21576 6.22880 6.23446 6.35485 6.36856 6.40691 6.46371 6.55188 6.65703 6.70127 6.71613 6.74325 6.75849 7.11082 7.30848 7.40145 7.72126 8.00812 8.07946 8.51227 9.08847 9.79382 10.20574 11.01762 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.002788 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.878085 B =10039.652627 C =10852.197191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.213 5.213 3 N -0.288 5.288 4 C 0.057 3.943 5 C -0.077 4.077 6 C -0.101 4.101 7 C -0.130 4.130 8 C -0.062 4.062 9 C -0.130 4.130 10 C -0.017 4.017 11 C 0.591 3.409 12 O -0.517 6.517 13 N -0.703 5.703 14 C 0.129 3.871 15 H 0.084 0.916 16 C -0.114 4.114 17 C -0.098 4.098 18 C -0.143 4.143 19 C 0.146 3.854 20 N -0.584 5.584 21 C -0.373 4.373 22 H 0.051 0.949 23 C -0.008 4.008 24 N -0.882 5.882 25 Si 1.046 2.954 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.143 3.857 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.401 0.599 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.271 0.729 47 H 0.016 0.984 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.509 12.733 -0.420 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N 0.004 4.996 3 N -0.125 5.125 4 C -0.087 4.087 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.150 4.150 8 C -0.082 4.082 9 C -0.139 4.139 10 C -0.154 4.154 11 C 0.373 3.627 12 O -0.391 6.391 13 N -0.354 5.354 14 C 0.024 3.976 15 H 0.102 0.898 16 C -0.152 4.152 17 C -0.136 4.136 18 C -0.183 4.183 19 C 0.019 3.981 20 N -0.306 5.306 21 C -0.501 4.501 22 H 0.069 0.931 23 C -0.214 4.214 24 N -0.519 5.519 25 Si 0.875 3.125 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.016 3.984 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.236 0.764 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.250 12.176 -0.550 18.751 hybrid contribution 1.637 0.771 -0.244 1.825 sum 15.886 12.947 -0.794 20.509 Atomic orbital electron populations 1.22524 0.71955 1.06634 1.05675 1.45730 1.08385 1.01558 1.43914 1.73442 1.03455 1.10698 1.24907 1.20598 0.91074 0.92288 1.04788 1.19877 0.88537 0.99133 1.02264 1.20608 0.97207 0.94523 0.99941 1.20647 0.98141 0.93698 1.02480 1.20077 0.89716 0.99602 0.98799 1.19368 0.91694 0.93988 1.08850 1.21086 0.91191 0.89139 1.13997 1.16737 0.77894 0.83429 0.84687 1.90911 1.48666 1.68203 1.31289 1.46214 1.62081 1.18547 1.08592 1.21702 0.95674 0.80336 0.99889 0.89775 1.21260 1.00115 0.95644 0.98205 1.20257 0.98501 0.94385 1.00498 1.21375 0.96372 0.97613 1.02959 1.20884 0.96130 0.88109 0.92991 1.43576 1.35717 0.98634 1.52682 1.19775 1.02751 1.15754 1.11824 0.93104 1.25654 0.93722 0.99345 1.02636 1.70749 1.36729 1.45627 0.98780 0.83831 0.76118 0.76393 0.76117 1.21851 1.21818 1.21753 1.21544 0.88887 0.90670 0.97257 0.88336 0.87385 0.87790 0.85333 0.85510 0.85737 0.85861 0.76430 0.89894 0.92645 0.93420 0.93308 0.91623 0.93371 0.90645 0.95702 0.91916 0.96571 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.02 59.85 0.66 1.35 16 2 N -0.21 -2.77 3.71 -63.75 -0.24 -3.01 16 3 N -0.29 -3.97 11.88 33.21 0.39 -3.57 16 4 C 0.06 0.76 7.53 -83.14 -0.63 0.13 16 5 C -0.08 -0.81 10.08 -39.43 -0.40 -1.20 16 6 C -0.10 -0.88 9.89 -39.98 -0.40 -1.28 16 7 C -0.13 -1.21 9.92 -39.89 -0.40 -1.61 16 8 C -0.06 -0.71 10.06 -39.68 -0.40 -1.10 16 9 C -0.13 -1.76 6.41 -104.94 -0.67 -2.44 16 10 C -0.02 -0.25 6.70 -81.93 -0.55 -0.79 16 11 C 0.59 9.03 6.94 -12.96 -0.09 8.94 16 12 O -0.52 -9.84 16.74 5.16 0.09 -9.75 16 13 N -0.70 -9.69 4.97 -55.57 -0.28 -9.97 16 14 C 0.13 2.11 2.31 -68.32 -0.16 1.95 16 15 H 0.08 1.53 6.68 -51.93 -0.35 1.19 16 16 C -0.11 -1.74 5.07 -28.02 -0.14 -1.88 16 17 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 18 C -0.14 -2.68 5.74 -28.58 -0.16 -2.85 16 19 C 0.15 3.26 5.14 -4.09 -0.02 3.23 16 20 N -0.58 -13.62 2.11 -171.88 -0.36 -13.98 16 21 C -0.37 -9.78 9.10 -15.05 -0.14 -9.92 16 22 H 0.05 1.37 8.00 -52.49 -0.42 0.95 16 23 C -0.01 -0.21 4.41 -17.43 -0.08 -0.29 16 24 N -0.88 -25.36 12.16 55.49 0.67 -24.69 16 25 Si 1.05 24.21 30.05 -169.99 -5.11 19.10 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.14 2.89 5.86 -2.76 -0.02 2.87 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.07 7.79 -51.93 -0.40 0.67 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.40 4.59 8.53 -40.82 -0.35 4.24 16 38 H 0.08 1.43 7.49 -51.93 -0.39 1.04 16 39 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.93 5.53 -51.93 -0.29 1.64 16 45 H 0.02 0.53 8.06 -51.93 -0.42 0.12 16 46 H 0.27 7.95 8.16 -40.82 -0.33 7.62 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -32.22 388.74 -9.88 -42.10 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.17 Total: 4.51 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.74 Total: -6.59 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.19 Total: -55.22 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.11 Total: 19.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.22 -9.88 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034471807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.258 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds