Wall clock time and date at job start Wed Apr 1 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28379 * 124.37118 * 2 1 4 4 C 1.31571 * 111.96427 * 179.97438 * 3 2 1 5 5 C 1.47397 * 126.82391 * 179.73841 * 4 3 2 6 6 O 1.21611 * 120.00487 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99848 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00287 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.32636 * 35.00364 * 8 7 5 10 10 C 1.47091 * 109.32923 * 154.65132 * 8 7 5 11 11 C 1.52570 * 114.32625 * 183.06039 * 10 8 7 12 12 C 1.50886 * 109.35448 * 274.98874 * 11 10 8 13 13 C 1.53946 * 110.09444 * 91.89438 * 12 11 10 14 14 N 1.47608 * 112.14110 * 319.42795 * 13 12 11 15 15 C 1.36929 * 118.64478 * 137.87213 * 14 13 12 16 16 H 1.07996 * 120.00418 * 206.51119 * 15 14 13 17 17 C 1.38823 * 119.99889 * 26.50694 * 15 14 13 18 18 N 1.31620 * 119.99671 * 15.67856 * 17 15 14 19 19 Si 1.86796 * 120.00020 * 195.67487 * 17 15 14 20 20 H 1.48506 * 109.47107 * 60.00253 * 19 17 15 21 21 H 1.48491 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46961 * 300.00274 * 19 17 15 23 23 C 1.44658 * 122.54037 * 317.86473 * 14 13 12 24 24 C 1.46884 * 106.35774 * 0.02562 * 4 3 2 25 25 C 1.39186 * 135.56833 * 179.97438 * 24 4 3 26 26 C 1.36710 * 119.51346 * 180.02562 * 25 24 4 27 27 C 1.38899 * 120.52469 * 0.04576 * 26 25 24 28 28 C 1.36684 * 120.89045 * 359.97234 * 27 26 25 29 29 C 1.37047 * 124.37185 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47146 * 90.02546 * 1 2 3 31 31 H 1.09004 * 109.46848 * 210.02292 * 1 2 3 32 32 H 1.08999 * 109.46737 * 330.02311 * 1 2 3 33 33 H 0.97001 * 119.99633 * 0.02562 * 7 5 4 34 34 H 1.08998 * 108.51598 * 304.31458 * 10 8 7 35 35 H 1.08994 * 108.51020 * 61.96838 * 10 8 7 36 36 H 1.09000 * 109.49194 * 34.94964 * 11 10 8 37 37 H 1.08993 * 109.48991 * 155.02244 * 11 10 8 38 38 H 1.09001 * 109.36354 * 212.08043 * 12 11 10 39 39 H 1.08999 * 109.36861 * 331.82314 * 12 11 10 40 40 H 1.08995 * 108.95385 * 80.12082 * 13 12 11 41 41 H 1.09003 * 108.94222 * 198.74658 * 13 12 11 42 42 H 0.97002 * 119.99570 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.61971 * 330.83849 * 23 14 13 44 44 H 1.09006 * 109.32527 * 210.89357 * 23 14 13 45 45 H 1.08003 * 120.24423 * 0.02562 * 25 24 4 46 46 H 1.08005 * 119.74158 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.55389 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.10717 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7770 0.0005 5 6 4.5911 1.7395 -0.0047 6 8 5.7394 1.3390 -0.0040 7 7 4.3392 3.0635 -0.0102 8 6 5.4486 4.0202 -0.0160 9 1 6.2713 3.6151 -0.6053 10 6 4.9973 5.2854 -0.6153 11 6 6.0887 6.3436 -0.7457 12 6 6.2028 7.1068 0.5509 13 6 7.2567 6.4496 1.4605 14 7 7.1838 4.9758 1.4218 15 6 8.3511 4.2620 1.3693 16 1 8.3630 3.2782 0.9240 17 6 9.5194 4.8030 1.8885 18 7 9.4621 5.8421 2.6944 19 14 11.1728 4.0561 1.4436 20 1 11.3678 4.1258 -0.0270 21 1 12.2559 4.8109 2.1233 22 1 11.2089 2.6374 1.8811 23 6 5.9278 4.2583 1.4373 24 6 3.5760 -0.6884 0.0003 25 6 4.6165 -1.6128 0.0002 26 6 4.3299 -2.9495 -0.0005 27 6 3.0120 -3.3884 -0.0021 28 6 1.9756 -2.4973 -0.0024 29 6 2.2387 -1.1312 0.0005 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.4233 3.3829 -0.0104 34 1 4.5985 5.0755 -1.6077 35 1 4.1951 5.6929 -0.0001 36 1 7.0398 5.8597 -0.9677 37 1 5.8336 7.0317 -1.5515 38 1 6.4975 8.1348 0.3404 39 1 5.2380 7.1040 1.0581 40 1 8.2490 6.7635 1.1367 41 1 7.0982 6.7850 2.4854 42 1 10.2784 6.2198 3.0575 43 1 5.1799 4.8410 1.9752 44 1 6.0667 3.2987 1.9354 45 1 5.6429 -1.2766 0.0007 46 1 5.1344 -3.6700 -0.0002 47 1 2.8035 -4.4481 -0.0023 48 1 0.9557 -2.8526 -0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034501204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:30 Heat of formation + Delta-G solvation = 83.457672 kcal Electronic energy + Delta-G solvation = -30011.191109 eV Core-core repulsion = 26068.304945 eV Total energy + Delta-G solvation = -3942.886165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.58520 -39.40491 -37.92706 -37.51029 -34.48072 -33.76997 -33.12669 -30.88828 -30.72699 -30.41076 -29.92404 -27.42694 -25.88626 -24.39926 -23.80417 -23.13739 -22.37295 -21.88877 -20.11814 -19.73919 -19.09295 -17.90693 -17.34471 -16.54502 -16.45538 -16.11982 -15.76191 -15.40140 -14.96061 -14.51324 -14.29970 -14.22797 -14.09136 -13.67862 -13.48466 -13.24971 -13.13119 -13.02593 -12.57714 -12.45465 -12.13971 -12.12108 -12.02532 -11.47591 -11.34603 -11.01925 -10.97924 -10.84548 -10.69474 -10.51512 -10.12119 -10.07479 -10.03156 -9.71324 -9.64618 -9.56140 -9.50433 -8.91730 -8.74448 -8.25128 -8.10384 -6.55513 -5.67041 -3.10050 0.72061 1.22336 1.88924 2.15908 3.36892 3.42559 3.49624 3.53006 3.57196 3.77108 4.08039 4.25853 4.60945 4.68132 4.73095 4.78796 4.83304 4.98770 5.02658 5.24483 5.32167 5.39441 5.43668 5.52238 5.54997 5.60336 5.78600 5.84566 6.04687 6.08538 6.10599 6.22748 6.30484 6.38278 6.39851 6.46148 6.53472 6.66011 6.69831 6.73870 6.79506 6.83608 6.89978 7.00460 7.18858 7.52446 7.63617 7.79908 7.95386 7.99683 8.55918 8.60119 9.36179 10.01338 10.45679 11.40735 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003052 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.774012 B = 9170.799404 C =10809.998187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.322 5.322 3 N -0.215 5.215 4 C 0.013 3.987 5 C 0.598 3.402 6 O -0.517 6.517 7 N -0.708 5.708 8 C 0.115 3.885 9 H 0.090 0.910 10 C -0.112 4.112 11 C -0.100 4.100 12 C -0.144 4.144 13 C 0.176 3.824 14 N -0.583 5.583 15 C -0.254 4.254 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.907 5.907 19 Si 0.901 3.099 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.157 3.843 24 C -0.110 4.110 25 C -0.038 4.038 26 C -0.145 4.145 27 C -0.084 4.084 28 C -0.124 4.124 29 C 0.063 3.937 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.451 -12.267 -7.034 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.115 5.115 3 N -0.044 5.044 4 C -0.159 4.159 5 C 0.381 3.619 6 O -0.390 6.390 7 N -0.359 5.359 8 C 0.009 3.991 9 H 0.108 0.892 10 C -0.150 4.150 11 C -0.138 4.138 12 C -0.183 4.183 13 C 0.051 3.949 14 N -0.304 5.304 15 C -0.384 4.384 16 H 0.088 0.912 17 C -0.194 4.194 18 N -0.552 5.552 19 Si 0.731 3.269 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.028 3.972 24 C -0.117 4.117 25 C -0.058 4.058 26 C -0.164 4.164 27 C -0.105 4.105 28 C -0.145 4.145 29 C -0.048 4.048 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.231 0.769 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.147 0.853 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.378 -11.509 -6.919 24.405 hybrid contribution 0.618 -0.816 -0.182 1.040 sum -19.759 -12.325 -7.101 24.347 Atomic orbital electron populations 1.22053 0.73272 1.05170 1.04020 1.45091 1.07023 1.00943 1.58448 1.72857 1.03935 1.13813 1.13826 1.23004 0.90243 0.92505 1.10102 1.16626 0.86212 0.81594 0.77456 1.90859 1.20203 1.78543 1.49424 1.46014 1.10629 1.05163 1.74059 1.21315 0.88035 0.87422 1.02376 0.89174 1.20577 0.99095 0.95715 0.99629 1.20827 0.99530 0.96291 0.97179 1.22085 1.00629 0.98690 0.96855 1.21054 0.96738 0.81918 0.95179 1.43595 1.00699 1.01141 1.84978 1.19290 0.86124 1.01021 1.31966 0.91237 1.25011 0.98600 0.98622 0.97186 1.70076 1.26771 1.25956 1.32417 0.86384 0.83755 0.78669 0.78114 1.21045 1.21825 1.20834 1.20938 0.88540 0.96243 0.91523 1.19470 0.92973 0.91985 1.07299 1.20498 0.99195 0.91588 0.94488 1.20852 0.96735 0.95488 1.03367 1.20725 0.92276 0.99304 0.98161 1.19704 0.99940 0.88410 1.06463 1.19162 0.90629 0.90020 1.05020 0.90210 0.89085 0.88571 0.76918 0.93369 0.92789 0.90416 0.93417 0.92943 0.93701 0.90643 0.95791 0.93794 0.95002 0.93255 0.84085 0.85248 0.85275 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.24 59.85 0.67 1.22 16 2 N -0.32 -3.60 3.74 -65.50 -0.24 -3.85 16 3 N -0.22 -2.94 11.52 34.46 0.40 -2.54 16 4 C 0.01 0.20 7.32 -80.75 -0.59 -0.39 16 5 C 0.60 10.87 7.76 -12.53 -0.10 10.77 16 6 O -0.52 -11.24 16.06 5.27 0.08 -11.16 16 7 N -0.71 -11.64 5.05 -56.71 -0.29 -11.93 16 8 C 0.11 2.16 2.34 -69.79 -0.16 1.99 16 9 H 0.09 1.99 7.57 -51.93 -0.39 1.60 16 10 C -0.11 -1.81 4.55 -29.79 -0.14 -1.95 16 11 C -0.10 -1.75 5.51 -28.01 -0.15 -1.90 16 12 C -0.14 -2.68 5.70 -27.30 -0.16 -2.84 16 13 C 0.18 4.22 4.66 -2.94 -0.01 4.21 16 14 N -0.58 -14.78 2.27 -172.02 -0.39 -15.17 16 15 C -0.25 -7.21 9.45 -15.06 -0.14 -7.35 16 16 H 0.07 2.03 7.88 -52.49 -0.41 1.62 16 17 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16 18 N -0.91 -26.76 11.01 55.49 0.61 -26.15 16 19 Si 0.90 22.65 29.58 -169.99 -5.03 17.62 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.16 3.48 5.24 -4.04 -0.02 3.45 16 24 C -0.11 -1.63 6.34 -105.05 -0.67 -2.30 16 25 C -0.04 -0.51 9.87 -39.78 -0.39 -0.90 16 26 C -0.15 -1.51 9.98 -39.89 -0.40 -1.90 16 27 C -0.08 -0.73 9.96 -39.90 -0.40 -1.13 16 28 C -0.12 -1.13 9.94 -39.81 -0.40 -1.53 16 29 C 0.06 0.76 6.85 -84.21 -0.58 0.19 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.40 5.49 8.31 -40.82 -0.34 5.15 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.81 7.34 -51.93 -0.38 0.43 16 36 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.79 7.31 -51.93 -0.38 0.41 16 40 H 0.08 2.01 6.33 -51.93 -0.33 1.68 16 41 H 0.02 0.62 8.03 -51.93 -0.42 0.21 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.03 0.66 8.05 -51.93 -0.42 0.25 16 44 H 0.05 1.20 7.97 -51.93 -0.41 0.79 16 45 H 0.14 2.05 7.65 -52.48 -0.40 1.65 16 46 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -34.03 387.37 -9.95 -43.98 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.21 Total: 3.71 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.71 Total: -0.34 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.09 Total: -59.64 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.03 -9.95 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034501204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.435 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds