Wall clock time and date at job start Wed Apr 1 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36097 * 126.30347 * 2 1 4 4 N 1.30065 * 110.12718 * 179.84464 * 3 2 1 5 5 C 1.35868 * 109.56223 * 0.42141 * 4 3 2 6 6 C 1.39405 * 133.52369 * 179.73676 * 5 4 3 7 7 C 1.39122 * 119.51555 * 179.97438 * 6 5 4 8 8 C 1.47683 * 119.90457 * 179.97438 * 7 6 5 9 9 O 1.21569 * 119.99795 * 0.02616 * 8 7 6 10 10 N 1.34777 * 119.99745 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99722 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47056 * 324.99831 * 11 10 8 13 13 C 1.52998 * 109.47018 * 85.00050 * 11 10 8 14 14 C 1.53008 * 109.46887 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47095 * 299.99919 * 14 13 11 16 16 H 1.08997 * 109.47414 * 300.00091 * 15 14 13 17 17 N 1.46497 * 109.46972 * 180.02562 * 15 14 13 18 18 C 1.36942 * 120.00224 * 85.00490 * 17 15 14 19 19 H 1.08005 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00073 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00473 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47320 * 90.00324 * 22 20 18 24 24 H 1.48502 * 109.47315 * 210.00354 * 22 20 18 25 25 H 1.48506 * 109.47320 * 329.99789 * 22 20 18 26 26 C 1.52998 * 109.47186 * 60.00265 * 15 14 13 27 27 C 1.53002 * 109.47034 * 205.00348 * 11 10 8 28 28 C 1.40132 * 120.18926 * 0.02562 * 7 6 5 29 29 C 1.36431 * 120.46170 * 359.97438 * 28 7 6 30 30 C 1.37801 * 126.30504 * 180.30569 * 2 1 3 31 31 H 1.09002 * 109.47391 * 269.69025 * 1 2 3 32 32 H 1.09001 * 109.46813 * 149.69081 * 1 2 3 33 33 H 1.09004 * 109.47041 * 29.69209 * 1 2 3 34 34 H 1.07990 * 124.93354 * 0.02562 * 3 2 1 35 35 H 1.08007 * 120.23862 * 359.97438 * 6 5 4 36 36 H 0.96997 * 119.99942 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47074 * 299.99474 * 13 11 10 38 38 H 1.08997 * 109.47086 * 60.00167 * 13 11 10 39 39 H 1.08995 * 109.46772 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47064 * 60.00224 * 14 13 11 41 41 H 0.97002 * 120.00476 * 264.99515 * 17 15 14 42 42 H 0.96993 * 120.00270 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.47460 * 179.97438 * 26 15 14 44 44 H 1.09005 * 109.47386 * 59.99809 * 26 15 14 45 45 H 1.09005 * 109.46777 * 299.99654 * 27 11 10 46 46 H 1.08995 * 109.47536 * 60.00068 * 27 11 10 47 47 H 1.08000 * 119.77194 * 180.02562 * 28 7 6 48 48 H 1.08004 * 119.92858 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0968 0.0000 4 7 3.5199 0.7344 0.0033 5 6 3.6002 -0.6218 -0.0038 6 6 4.6660 -1.5205 -0.0088 7 6 4.4095 -2.8878 -0.0152 8 6 5.5321 -3.8474 -0.0212 9 8 6.6782 -3.4421 -0.0200 10 7 5.2858 -5.1725 -0.0280 11 6 6.3994 -6.1244 -0.0333 12 1 7.2224 -5.7175 -0.6210 13 6 6.8692 -6.3677 1.4023 14 6 8.0318 -7.3623 1.3968 15 6 7.5692 -8.6842 0.7806 16 1 6.7461 -9.0906 1.3683 17 7 8.6822 -9.6367 0.7759 18 6 8.9386 -10.3957 1.8865 19 1 8.3206 -10.2916 2.7661 20 6 9.9929 -11.2986 1.8818 21 7 10.7464 -11.4250 0.8101 22 14 10.3431 -12.3333 3.3971 23 1 9.5799 -13.6046 3.3157 24 1 11.7961 -12.6319 3.4677 25 1 9.9319 -11.5860 4.6128 26 6 7.0993 -8.4409 -0.6550 27 6 5.9373 -7.4463 -0.6497 28 6 3.0891 -3.3572 -0.0172 29 6 2.0436 -2.4808 -0.0123 30 6 2.2809 -1.1105 -0.0059 31 1 -0.3634 -0.0056 1.0276 32 1 -0.3633 -0.8872 -0.5186 33 1 -0.3633 0.8928 -0.5091 34 1 1.9234 2.1193 0.0004 35 1 5.6833 -1.1577 -0.0077 36 1 4.3713 -5.4958 -0.0293 37 1 7.1984 -5.4259 1.8413 38 1 6.0463 -6.7745 1.9899 39 1 8.3668 -7.5353 2.4194 40 1 8.8549 -6.9559 0.8091 41 1 9.2374 -9.7300 -0.0140 42 1 11.4833 -12.0557 0.8070 43 1 6.7701 -9.3826 -1.0941 44 1 7.9224 -8.0345 -1.2428 45 1 5.1143 -7.8532 -0.0620 46 1 5.6026 -7.2730 -1.6724 47 1 2.8978 -4.4201 -0.0218 48 1 1.0293 -2.8519 -0.0135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034677576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:01 Heat of formation + Delta-G solvation = 41.938139 kcal Electronic energy + Delta-G solvation = -28510.873821 eV Core-core repulsion = 24566.187234 eV Total energy + Delta-G solvation = -3944.686587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.60530 -40.13778 -38.18829 -37.06234 -34.91656 -34.71186 -33.03626 -31.16127 -30.67704 -30.35620 -29.75867 -27.75315 -27.15566 -24.40765 -23.34703 -23.16431 -22.28686 -21.18538 -21.09958 -20.47080 -19.47948 -18.11145 -17.63789 -17.12725 -16.88711 -16.34275 -16.06326 -15.41221 -15.01682 -14.84361 -14.51115 -14.25776 -14.08138 -13.89714 -13.75124 -13.66739 -13.51084 -13.50569 -13.08240 -12.98120 -12.49670 -12.06435 -11.96052 -11.88766 -11.75988 -11.38797 -11.00433 -10.86230 -10.78100 -10.71598 -10.62974 -10.41606 -10.15573 -10.05633 -9.92994 -9.71176 -9.54606 -8.99300 -8.82176 -8.77156 -8.56344 -6.89628 -5.71593 -2.99859 0.52043 0.68628 2.07067 2.28908 2.81744 3.06502 3.46527 3.51787 3.53529 3.64789 3.82993 4.03780 4.07170 4.44349 4.50185 4.57346 4.63600 4.75641 4.85383 4.88939 4.92696 5.01384 5.09810 5.25531 5.33064 5.56550 5.61708 5.66591 5.73218 5.78004 5.86777 5.91948 5.93257 5.95795 6.04156 6.08522 6.27114 6.31105 6.32898 6.35965 6.54395 6.58580 6.62283 6.71125 6.78563 7.04438 7.20778 7.38083 7.49858 7.74835 8.20947 8.47398 9.58241 10.17362 10.51796 11.51213 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.001722 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.347821 B =16256.241901 C =16375.760317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.497 5.497 3 C 0.257 3.743 4 N -0.486 5.486 5 C 0.034 3.966 6 C 0.008 3.992 7 C -0.144 4.144 8 C 0.561 3.439 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.146 3.854 12 H 0.089 0.911 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.069 4.069 29 C -0.117 4.117 30 C 0.065 3.935 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.216 0.784 35 H 0.145 0.855 36 H 0.396 0.604 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.135 0.865 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.019 23.833 -4.360 36.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.187 5.187 3 C -0.028 4.028 4 N -0.204 5.204 5 C -0.084 4.084 6 C -0.012 4.012 7 C -0.150 4.150 8 C 0.348 3.652 9 O -0.411 6.411 10 N -0.371 5.371 11 C 0.042 3.958 12 H 0.107 0.893 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.159 4.159 27 C -0.157 4.157 28 C -0.089 4.089 29 C -0.138 4.138 30 C -0.045 4.045 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.232 0.768 35 H 0.163 0.837 36 H 0.231 0.769 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.152 0.848 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.595 24.541 -4.189 35.706 hybrid contribution -0.907 -1.137 0.651 1.593 sum -26.502 23.404 -3.538 35.533 Atomic orbital electron populations 1.22024 0.75784 1.04872 1.03723 1.45333 1.07499 1.05542 1.60326 1.25429 0.85053 0.93429 0.98939 1.70502 1.18259 1.10766 1.20864 1.18914 0.91892 0.90319 1.07267 1.20428 0.98526 0.89947 0.92343 1.19664 0.93369 0.93366 1.08596 1.18057 0.88377 0.82353 0.76447 1.90806 1.22135 1.78663 1.49512 1.46052 1.10363 1.05539 1.75175 1.21136 0.88809 0.88083 0.97771 0.89280 1.21901 0.99264 0.99824 0.95325 1.22223 0.96570 0.96307 1.02211 1.20239 0.91107 0.89123 0.92808 0.93636 1.42431 1.33756 1.44183 1.16209 1.19247 1.10473 1.14052 0.92959 0.91239 1.24731 0.98523 1.00364 0.97470 1.69658 1.21055 1.39624 1.27864 0.86215 0.77169 0.80439 0.82527 1.21823 1.21831 1.20820 1.21742 0.96949 0.98170 0.99069 1.21743 0.99339 0.94296 1.00339 1.20721 0.90957 0.99551 0.97692 1.19543 0.99827 0.88539 1.05844 1.19057 0.91249 0.89559 1.04661 0.90480 0.89636 0.89127 0.76774 0.83680 0.76926 0.92268 0.92328 0.91821 0.92460 0.78311 0.93584 0.91379 0.91934 0.91599 0.91845 0.84772 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.11 11.17 59.85 0.67 0.78 16 2 N -0.50 -3.01 3.20 -123.13 -0.39 -3.41 16 3 C 0.26 1.71 12.50 -89.77 -1.12 0.59 16 4 N -0.49 -5.34 11.28 -12.06 -0.14 -5.48 16 5 C 0.03 0.39 7.22 -84.72 -0.61 -0.23 16 6 C 0.01 0.09 9.64 -38.82 -0.37 -0.28 16 7 C -0.14 -1.60 5.87 -105.00 -0.62 -2.21 16 8 C 0.56 7.48 7.73 -12.40 -0.10 7.38 16 9 O -0.53 -9.30 15.98 5.31 0.08 -9.22 16 10 N -0.72 -8.07 5.03 -54.80 -0.28 -8.34 16 11 C 0.15 1.96 2.45 -67.93 -0.17 1.79 16 12 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.88 5.50 -26.73 -0.15 -2.03 16 14 C -0.13 -2.45 5.50 -26.73 -0.15 -2.59 16 15 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.73 -18.26 5.12 -53.43 -0.27 -18.53 16 18 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.12 -1.93 5.39 -26.76 -0.14 -2.07 16 27 C -0.12 -1.46 5.39 -26.75 -0.14 -1.60 16 28 C -0.07 -0.54 9.47 -39.52 -0.37 -0.92 16 29 C -0.12 -0.84 9.97 -39.93 -0.40 -1.24 16 30 C 0.07 0.58 6.87 -83.95 -0.58 0.00 16 31 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.22 0.40 8.06 -52.49 -0.42 -0.03 16 35 H 0.15 1.89 7.63 -52.48 -0.40 1.49 16 36 H 0.40 3.13 6.60 -40.82 -0.27 2.86 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 42 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.13 0.68 6.36 -52.49 -0.33 0.34 16 48 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -36.83 393.26 -11.23 -48.05 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.18 Total: 7.77 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -4.68 Total: -6.62 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.35 Total: -63.53 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.83 -11.23 -48.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034677576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.993 kcal (2) G-P(sol) polarization free energy of solvation -36.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds