Wall clock time and date at job start Wed Apr 1 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36118 * 126.31207 * 2 1 4 4 N 1.30085 * 110.04532 * 179.97438 * 3 2 1 5 5 C 1.35855 * 109.53400 * 359.97438 * 4 3 2 6 6 C 1.39716 * 133.50960 * 179.97438 * 5 4 3 7 7 C 1.37847 * 120.10745 * 180.02562 * 6 5 4 8 8 C 1.38321 * 120.72619 * 359.97438 * 7 6 5 9 9 C 1.39399 * 120.28450 * 0.02562 * 8 7 6 10 10 C 1.47530 * 120.24799 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99458 * 219.90250 * 10 9 8 12 12 N 1.34777 * 120.00364 * 39.90205 * 10 9 8 13 13 C 1.46499 * 119.99975 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.46823 * 34.99919 * 13 12 10 15 15 C 1.52997 * 109.46960 * 155.00223 * 13 12 10 16 16 C 1.52998 * 109.47008 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47018 * 299.99716 * 16 15 13 18 18 H 1.09004 * 109.46744 * 300.00447 * 17 16 15 19 19 N 1.46499 * 109.47463 * 180.02562 * 17 16 15 20 20 C 1.36938 * 120.00099 * 154.99626 * 19 17 16 21 21 H 1.08000 * 119.99741 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99898 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99900 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47325 * 60.00278 * 24 22 20 26 26 H 1.48504 * 109.47319 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47081 * 299.99996 * 24 22 20 28 28 C 1.52997 * 109.46999 * 60.00279 * 17 16 15 29 29 C 1.52992 * 109.47242 * 275.00415 * 13 12 10 30 30 C 1.37517 * 126.30759 * 180.25302 * 2 1 3 31 31 H 1.08997 * 109.46950 * 95.96724 * 1 2 3 32 32 H 1.08994 * 109.46720 * 215.96419 * 1 2 3 33 33 H 1.08994 * 109.46540 * 335.96745 * 1 2 3 34 34 H 1.08008 * 124.97443 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.94866 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.63511 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.85853 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99674 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.46964 * 60.00008 * 15 13 12 40 40 H 1.09006 * 109.47241 * 299.99928 * 15 13 12 41 41 H 1.08999 * 109.47009 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.47673 * 59.99926 * 16 15 13 43 43 H 0.97001 * 119.99706 * 335.00451 * 19 17 16 44 44 H 0.96998 * 119.99768 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.47330 * 59.99837 * 28 17 16 46 46 H 1.09006 * 109.47241 * 180.02562 * 28 17 16 47 47 H 1.09003 * 109.47520 * 299.99731 * 29 13 12 48 48 H 1.09001 * 109.47369 * 60.00031 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2711 1.0968 0.0000 4 7 3.5199 0.7325 0.0005 5 6 3.5973 -0.6239 0.0015 6 6 4.6638 -1.5265 0.0019 7 6 4.4213 -2.8834 0.0024 8 6 3.1264 -3.3699 0.0030 9 6 2.0450 -2.4903 0.0026 10 6 0.6643 -3.0100 0.0027 11 8 -0.1892 -2.4684 -0.6731 12 7 0.3489 -4.0852 0.7518 13 6 -1.0223 -4.6009 0.7523 14 1 -1.4568 -4.4784 -0.2399 15 6 -1.0089 -6.0850 1.1236 16 6 -2.4408 -6.6237 1.1235 17 6 -3.2769 -5.8500 2.1449 18 1 -2.8427 -5.9724 3.1372 19 7 -4.6480 -6.3662 2.1453 20 6 -5.4309 -6.2292 3.2604 21 1 -5.0377 -5.7402 4.1394 22 6 -6.7298 -6.7188 3.2609 23 7 -7.2087 -7.3151 2.1898 24 14 -7.7980 -6.5312 4.7817 25 1 -7.9580 -5.0895 5.0996 26 1 -9.1314 -7.1334 4.5275 27 1 -7.1537 -7.2222 5.9275 28 6 -3.2904 -4.3659 1.7735 29 6 -1.8579 -3.8270 1.7739 30 6 2.2793 -1.1082 -0.0049 31 1 -0.3633 -0.1068 -1.0221 32 1 -0.3632 -0.8318 0.6035 33 1 -0.3632 0.9386 0.4185 34 1 1.9246 2.1198 0.0004 35 1 5.6800 -1.1604 0.0010 36 1 5.2513 -3.5743 0.0023 37 1 2.9525 -4.4358 0.0038 38 1 1.0297 -4.5170 1.2912 39 1 -0.5743 -6.2073 2.1157 40 1 -0.4136 -6.6363 0.3957 41 1 -2.4313 -7.6810 1.3885 42 1 -2.8750 -6.5015 0.1313 43 1 -5.0011 -6.8052 1.3557 44 1 -8.1165 -7.6569 2.1900 45 1 -3.7245 -4.2435 0.7813 46 1 -3.8857 -3.8145 2.5015 47 1 -1.4235 -3.9494 2.7661 48 1 -1.8675 -2.7697 1.5093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034682554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:05 Heat of formation + Delta-G solvation = 41.238432 kcal Electronic energy + Delta-G solvation = -29475.733672 eV Core-core repulsion = 25531.016744 eV Total energy + Delta-G solvation = -3944.716928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53515 -40.10755 -38.14294 -37.39834 -34.96954 -34.32380 -33.13377 -31.32841 -30.48858 -30.40248 -29.72620 -27.54601 -27.06094 -24.45650 -23.53954 -22.57265 -22.42765 -22.09917 -20.91130 -20.23170 -19.44805 -17.94256 -17.53271 -17.06779 -16.81718 -16.27278 -16.10387 -15.68881 -15.22555 -15.12116 -14.45661 -14.25881 -14.02797 -13.88007 -13.80727 -13.58799 -13.42549 -13.17166 -12.77119 -12.61485 -12.35312 -12.20558 -12.08147 -11.87294 -11.84135 -11.48202 -11.06576 -10.83525 -10.81770 -10.73689 -10.65006 -10.59103 -10.24082 -10.16627 -9.89488 -9.80336 -9.60717 -9.06898 -8.87589 -8.73793 -8.43814 -6.96587 -5.77410 -3.06073 0.32206 1.14276 2.19886 2.35888 2.72279 2.99777 3.42499 3.47082 3.48022 3.51427 3.90553 4.20382 4.46848 4.52622 4.57913 4.58609 4.82329 4.93711 4.96880 5.01466 5.07797 5.12761 5.22277 5.31771 5.44608 5.48948 5.54936 5.63176 5.67261 5.70499 5.79012 5.81349 5.92867 5.99963 6.02106 6.12598 6.19142 6.19796 6.24804 6.40145 6.42293 6.51705 6.58859 6.67106 6.77859 6.94570 7.10625 7.32866 7.50224 7.68344 8.00265 8.41456 9.52290 10.10725 10.45168 11.45246 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.002173 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.937967 B =12884.851872 C =13650.579838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.483 5.483 3 C 0.260 3.740 4 N -0.496 5.496 5 C 0.036 3.964 6 C -0.041 4.041 7 C -0.137 4.137 8 C -0.068 4.068 9 C -0.123 4.123 10 C 0.557 3.443 11 O -0.536 6.536 12 N -0.716 5.716 13 C 0.144 3.856 14 H 0.089 0.911 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.725 5.725 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.132 4.132 29 C -0.122 4.122 30 C 0.091 3.909 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.216 0.784 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.399 0.601 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.138 11.451 -4.987 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.170 5.170 3 C -0.026 4.026 4 N -0.215 5.215 5 C -0.082 4.082 6 C -0.060 4.060 7 C -0.158 4.158 8 C -0.088 4.088 9 C -0.129 4.129 10 C 0.344 3.656 11 O -0.414 6.414 12 N -0.365 5.365 13 C 0.041 3.959 14 H 0.107 0.893 15 C -0.157 4.157 16 C -0.159 4.159 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.173 4.173 29 C -0.162 4.162 30 C -0.021 4.021 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.937 12.380 -5.297 27.465 hybrid contribution -1.288 -0.600 0.796 1.629 sum 22.649 11.780 -4.501 25.923 Atomic orbital electron populations 1.22248 0.74603 1.03928 1.05043 1.45312 1.08190 1.05121 1.58417 1.25443 0.85112 0.93570 0.98467 1.70521 1.18336 1.10454 1.22193 1.19046 0.91768 0.90482 1.06932 1.20447 0.97563 0.91442 0.96567 1.20821 0.96738 0.94765 1.03458 1.21115 0.91404 0.99017 0.97229 1.18831 0.93912 0.89978 1.10193 1.18192 0.87437 0.80367 0.79653 1.90795 1.50172 1.58219 1.42250 1.46151 1.12668 1.30802 1.46899 1.21167 0.80359 0.93423 1.00963 0.89265 1.21752 0.98705 0.93639 1.01653 1.21754 0.93221 1.00279 1.00678 1.20231 0.86546 0.90482 0.96001 0.93623 1.42420 1.09019 1.69188 1.15926 1.19187 0.93860 1.31308 0.92592 0.91313 1.24740 0.97480 1.01316 0.97476 1.69647 1.16501 1.44112 1.27900 0.86288 0.79901 0.77580 0.82536 1.21320 1.21707 1.21301 1.22236 0.93457 0.99624 1.01959 1.21900 0.96913 0.99056 0.98282 1.18570 0.91298 0.88188 1.04071 0.89609 0.89172 0.89977 0.76781 0.84890 0.84583 0.84634 0.76626 0.91498 0.91778 0.91289 0.91947 0.78296 0.93476 0.92475 0.91813 0.92280 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.35 59.85 0.56 1.33 16 2 N -0.48 -5.07 3.19 -122.94 -0.39 -5.46 16 3 C 0.26 2.38 12.50 -89.73 -1.12 1.26 16 4 N -0.50 -5.79 11.28 -12.04 -0.14 -5.93 16 5 C 0.04 0.42 7.22 -84.71 -0.61 -0.19 16 6 C -0.04 -0.37 10.09 -39.17 -0.40 -0.76 16 7 C -0.14 -0.99 9.99 -39.69 -0.40 -1.39 16 8 C -0.07 -0.54 9.33 -39.12 -0.37 -0.91 16 9 C -0.12 -1.34 5.76 -104.95 -0.60 -1.94 16 10 C 0.56 6.68 6.60 -12.47 -0.08 6.59 16 11 O -0.54 -7.92 12.89 5.29 0.07 -7.85 16 12 N -0.72 -7.30 5.00 -54.85 -0.27 -7.58 16 13 C 0.14 1.77 2.45 -67.94 -0.17 1.60 16 14 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 15 C -0.12 -1.37 5.39 -26.73 -0.14 -1.52 16 16 C -0.12 -1.84 5.39 -26.73 -0.14 -1.99 16 17 C 0.18 3.34 2.77 -67.93 -0.19 3.16 16 18 H 0.05 0.88 8.08 -51.93 -0.42 0.47 16 19 N -0.73 -17.78 5.12 -53.42 -0.27 -18.05 16 20 C -0.24 -6.52 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 24 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.13 -2.29 5.50 -26.71 -0.15 -2.44 16 29 C -0.12 -1.69 5.50 -26.71 -0.15 -1.84 16 30 C 0.09 1.08 6.74 -83.76 -0.56 0.52 16 31 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 32 H 0.09 1.00 6.03 -51.93 -0.31 0.69 16 33 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.22 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.14 0.75 7.85 -52.49 -0.41 0.34 16 38 H 0.40 3.04 8.03 -40.82 -0.33 2.71 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -34.25 388.07 -11.43 -45.67 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.20 Total: 9.10 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.76 Total: -5.68 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.35 Total: -64.31 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.07 Total: -7.85 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.25 -11.43 -45.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034682554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.912 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds