Wall clock time and date at job start Wed Apr 1 2020 04:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28442 * 124.15775 * 2 1 4 4 C 1.32139 * 111.39228 * 179.80885 * 3 2 1 5 5 C 1.40941 * 135.42397 * 180.11092 * 4 3 2 6 6 C 1.35810 * 119.54485 * 180.33975 * 5 4 3 7 7 C 1.39484 * 121.84453 * 0.02562 * 6 5 4 8 8 C 1.36078 * 121.56784 * 359.97438 * 7 6 5 9 9 C 1.40059 * 119.46874 * 359.97438 * 8 7 6 10 10 C 1.36193 * 124.15451 * 180.29290 * 2 1 3 11 11 C 1.46423 * 126.86053 * 359.97438 * 10 2 1 12 12 O 1.21726 * 119.99888 * 98.45891 * 11 10 2 13 13 N 1.34773 * 120.00152 * 278.45703 * 11 10 2 14 14 C 1.46504 * 120.00048 * 185.15171 * 13 11 10 15 15 H 1.09000 * 109.20463 * 35.64471 * 14 13 11 16 16 C 1.50132 * 109.20634 * 155.00498 * 14 13 11 17 17 C 1.52534 * 105.41229 * 218.02652 * 16 14 13 18 18 C 1.46239 * 114.27612 * 270.59461 * 17 16 14 19 19 N 1.50164 * 107.53301 * 58.41069 * 18 17 16 20 20 C 1.36936 * 120.54067 * 109.56534 * 19 18 17 21 21 H 1.08005 * 119.99655 * 318.39366 * 20 19 18 22 22 C 1.38810 * 120.00363 * 138.38734 * 20 19 18 23 23 N 1.31614 * 120.00159 * 161.81506 * 22 20 19 24 24 Si 1.86801 * 119.99745 * 341.81524 * 22 20 19 25 25 H 1.48498 * 109.47033 * 88.23253 * 24 22 20 26 26 H 1.48501 * 109.47180 * 208.22973 * 24 22 20 27 27 H 1.48501 * 109.47277 * 328.23134 * 24 22 20 28 28 C 1.43434 * 118.92573 * 289.58623 * 19 18 17 29 29 C 1.54839 * 109.20851 * 276.32780 * 14 13 11 30 30 H 1.08998 * 109.47556 * 264.38704 * 1 2 3 31 31 H 1.09007 * 109.47258 * 144.38268 * 1 2 3 32 32 H 1.08999 * 109.47165 * 24.38947 * 1 2 3 33 33 H 1.08000 * 120.22391 * 0.36766 * 5 4 3 34 34 H 1.08006 * 119.08206 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.22103 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.26370 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00577 * 5.15897 * 13 11 10 38 38 H 1.09002 * 110.24796 * 337.00095 * 16 14 13 39 39 H 1.09001 * 110.25048 * 99.05750 * 16 14 13 40 40 H 1.08999 * 108.52391 * 31.84112 * 17 16 14 41 41 H 1.09000 * 108.51829 * 149.50859 * 17 16 14 42 42 H 1.08997 * 109.83985 * 177.91735 * 18 17 16 43 43 H 1.09004 * 109.84607 * 298.83288 * 18 17 16 44 44 H 0.96997 * 120.00456 * 180.02562 * 23 22 20 45 45 H 1.09001 * 108.16182 * 213.28872 * 28 19 18 46 46 H 1.09006 * 108.15912 * 330.06329 * 28 19 18 47 47 H 1.08998 * 109.36137 * 320.98854 * 29 14 13 48 48 H 1.08994 * 109.36185 * 80.58446 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0629 0.0000 4 6 3.4749 0.7709 0.0041 5 6 4.6726 1.5138 0.0079 6 6 5.8645 0.8628 0.0047 7 6 5.9424 -0.5299 -0.0028 8 6 4.8245 -1.3058 -0.0069 9 6 3.5632 -0.6971 -0.0028 10 6 2.2296 -1.1270 -0.0058 11 6 1.7533 -2.5116 -0.0123 12 8 1.7015 -3.1325 -1.0580 13 7 1.3722 -3.0986 1.1394 14 6 1.0032 -4.5163 1.1520 15 1 1.6347 -5.0574 0.4473 16 6 1.2156 -5.0698 2.5313 17 6 1.7568 -6.4806 2.3231 18 6 0.7249 -7.5124 2.2274 19 7 -0.1728 -7.1493 1.0797 20 6 -0.1596 -7.8863 -0.0743 21 1 0.7787 -8.2268 -0.4868 22 6 -1.3521 -8.1960 -0.7138 23 7 -1.3436 -8.5772 -1.9735 24 14 -2.9689 -8.0717 0.2135 25 1 -3.5054 -6.6925 0.0902 26 1 -3.9433 -9.0349 -0.3592 27 1 -2.7433 -8.3888 1.6466 28 6 -1.0441 -6.0175 1.2116 29 6 -0.4775 -4.6612 0.7229 30 1 -0.3634 -0.1005 1.0227 31 1 -0.3634 -0.8355 -0.5985 32 1 -0.3633 0.9359 -0.4244 33 1 4.6427 2.5934 0.0138 34 1 6.7777 1.4395 0.0081 35 1 6.9129 -1.0036 -0.0047 36 1 4.9094 -2.3825 -0.0123 37 1 1.3420 -2.5824 1.9602 38 1 1.9413 -4.4635 3.0734 39 1 0.2707 -5.1045 3.0735 40 1 2.3458 -6.4938 1.4060 41 1 2.4128 -6.7265 3.1581 42 1 1.1873 -8.4821 2.0431 43 1 0.1492 -7.5469 3.1523 44 1 -2.1768 -8.7932 -2.4206 45 1 -1.9573 -6.2250 0.6538 46 1 -1.3080 -5.9128 2.2640 47 1 -1.0605 -3.8488 1.1566 48 1 -0.5453 -4.6119 -0.3638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052844009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:47 Heat of formation + Delta-G solvation = 100.050044 kcal Electronic energy + Delta-G solvation = -30311.869796 eV Core-core repulsion = 26369.703131 eV Total energy + Delta-G solvation = -3942.166665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.64152 -39.76930 -38.01063 -37.83669 -34.89259 -33.13623 -32.88000 -32.18635 -31.34590 -30.81256 -29.49685 -27.73611 -26.42770 -24.70119 -23.73317 -23.19142 -22.53094 -22.14426 -20.50527 -19.70750 -19.54943 -18.03026 -17.63697 -16.81267 -16.60195 -16.37505 -16.02734 -15.48220 -15.10507 -14.69027 -14.49882 -14.30313 -14.16390 -13.97940 -13.53266 -13.47191 -13.30652 -13.24905 -13.06796 -12.63928 -12.08526 -12.00665 -11.97069 -11.91254 -11.89450 -11.84815 -11.07169 -10.94732 -10.62672 -10.51039 -10.48500 -10.41050 -10.25228 -10.08010 -9.94668 -9.70496 -9.55318 -8.91051 -8.84322 -8.44939 -7.89650 -6.75020 -5.97081 -3.47278 0.38167 1.49044 1.86171 2.19798 2.58419 3.14692 3.28608 3.43998 3.48916 3.66489 3.90557 4.35926 4.51109 4.65891 4.69094 4.77269 4.85008 4.90150 5.01179 5.03143 5.09880 5.19737 5.26741 5.34499 5.36907 5.40738 5.53293 5.73102 5.81334 5.85674 5.91182 6.02823 6.13945 6.20040 6.23779 6.27173 6.30073 6.41413 6.42713 6.47842 6.56376 6.64866 6.71768 6.74954 6.78195 6.85042 6.92708 7.45727 7.72479 8.11247 8.11634 8.38861 9.00612 9.70701 10.14319 11.17945 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002897 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.380561 B = 9662.373323 C =10168.688087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.220 5.220 3 N -0.291 5.291 4 C 0.058 3.942 5 C -0.080 4.080 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.058 4.058 9 C -0.127 4.127 10 C -0.015 4.015 11 C 0.584 3.416 12 O -0.502 6.502 13 N -0.713 5.713 14 C 0.155 3.845 15 H 0.098 0.902 16 C -0.120 4.120 17 C -0.131 4.131 18 C 0.135 3.865 19 N -0.601 5.601 20 C -0.267 4.267 21 H 0.076 0.924 22 C 0.038 3.962 23 N -0.901 5.901 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.147 3.853 29 C -0.148 4.148 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.395 0.605 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.263 0.737 45 H 0.047 0.953 46 H 0.030 0.970 47 H 0.049 0.951 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.813 18.918 10.296 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.003 5.003 3 N -0.128 5.128 4 C -0.087 4.087 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.151 4.151 8 C -0.079 4.079 9 C -0.135 4.135 10 C -0.152 4.152 11 C 0.366 3.634 12 O -0.375 6.375 13 N -0.365 5.365 14 C 0.052 3.948 15 H 0.116 0.884 16 C -0.158 4.158 17 C -0.170 4.170 18 C 0.011 3.989 19 N -0.324 5.324 20 C -0.396 4.396 21 H 0.093 0.907 22 C -0.163 4.163 23 N -0.541 5.541 24 Si 0.718 3.282 25 H -0.212 1.212 26 H -0.231 1.231 27 H -0.196 1.196 28 C 0.018 3.982 29 C -0.190 4.190 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.733 19.250 9.363 22.760 hybrid contribution -0.604 -0.172 0.649 0.903 sum 7.130 19.077 10.013 22.694 Atomic orbital electron populations 1.22469 0.72307 1.06618 1.05284 1.45728 1.08226 1.01746 1.44577 1.73417 1.03469 1.10747 1.25124 1.20599 0.91056 0.92291 1.04722 1.19858 0.88543 0.99072 1.02637 1.20613 0.97200 0.94536 0.99719 1.20659 0.98207 0.93667 1.02588 1.20123 0.89709 0.99780 0.98249 1.19347 0.91728 0.93868 1.08594 1.21247 0.91330 0.88971 1.13631 1.16782 0.78100 0.83721 0.84835 1.90979 1.51753 1.63860 1.30864 1.46509 1.67053 1.13116 1.09777 1.21341 0.97666 0.77754 0.98018 0.88449 1.21321 1.01511 0.97234 0.95730 1.20867 0.99805 0.94901 1.01413 1.20464 0.91667 0.96552 0.90174 1.44200 1.47409 1.27273 1.13537 1.18723 0.93385 1.29167 0.98297 0.90684 1.25578 0.98069 0.96947 0.95670 1.69832 1.27196 1.47738 1.09383 0.86863 0.84275 0.76141 0.80948 1.21232 1.23128 1.19580 1.20733 0.93748 0.86436 0.97235 1.23227 0.94010 0.99357 1.02421 0.88601 0.88002 0.87403 0.85381 0.85516 0.85686 0.85713 0.77071 0.91854 0.90769 0.91585 0.93223 0.91274 0.95034 0.92676 0.93508 0.95191 0.93185 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.99 59.85 0.66 1.26 16 2 N -0.22 -2.72 3.71 -63.75 -0.24 -2.95 16 3 N -0.29 -3.91 11.88 33.21 0.39 -3.51 16 4 C 0.06 0.78 7.53 -83.13 -0.63 0.15 16 5 C -0.08 -0.85 10.09 -39.43 -0.40 -1.25 16 6 C -0.10 -0.90 9.89 -39.99 -0.40 -1.29 16 7 C -0.13 -1.31 9.92 -39.89 -0.40 -1.71 16 8 C -0.06 -0.72 10.06 -39.68 -0.40 -1.12 16 9 C -0.13 -1.77 6.41 -104.93 -0.67 -2.45 16 10 C -0.02 -0.22 6.70 -81.93 -0.55 -0.77 16 11 C 0.58 9.06 6.97 -12.97 -0.09 8.97 16 12 O -0.50 -10.23 16.83 5.17 0.09 -10.14 16 13 N -0.71 -9.36 4.97 -55.64 -0.28 -9.63 16 14 C 0.15 2.45 2.18 -68.39 -0.15 2.30 16 15 H 0.10 1.92 6.35 -51.93 -0.33 1.59 16 16 C -0.12 -1.61 5.34 -28.40 -0.15 -1.76 16 17 C -0.13 -1.98 5.20 -30.18 -0.16 -2.14 16 18 C 0.14 2.46 6.11 -5.21 -0.03 2.43 16 19 N -0.60 -13.59 2.13 -175.08 -0.37 -13.96 16 20 C -0.27 -7.34 9.95 -15.06 -0.15 -7.49 16 21 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 22 C 0.04 1.10 5.36 -17.43 -0.09 1.00 16 23 N -0.90 -27.63 13.97 55.49 0.78 -26.85 16 24 Si 0.89 22.13 25.25 -169.99 -4.29 17.84 16 25 H -0.28 -6.85 6.47 56.52 0.37 -6.49 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.15 3.03 4.16 -4.66 -0.02 3.01 16 29 C -0.15 -2.68 5.98 -24.76 -0.15 -2.83 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.40 3.98 8.46 -40.82 -0.35 3.63 16 38 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 39 H 0.07 0.98 6.28 -51.93 -0.33 0.65 16 40 H 0.07 1.13 6.93 -51.93 -0.36 0.77 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.29 7.99 -51.93 -0.42 0.87 16 43 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.05 1.10 3.02 -51.93 -0.16 0.94 16 46 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 47 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 48 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -35.01 381.29 -8.87 -43.88 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.92 Total: 3.26 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.77 Total: -3.67 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.29 Total: 17.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.01 -8.87 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052844009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.930 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds