Wall clock time and date at job start Wed Apr 1 2020 04:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28442 * 124.15775 * 2 1 4 4 C 1.32139 * 111.39228 * 179.80885 * 3 2 1 5 5 C 1.40941 * 135.42397 * 180.11092 * 4 3 2 6 6 C 1.35810 * 119.54485 * 180.33975 * 5 4 3 7 7 C 1.39484 * 121.84453 * 0.02562 * 6 5 4 8 8 C 1.36078 * 121.56784 * 359.97438 * 7 6 5 9 9 C 1.40059 * 119.46874 * 359.97438 * 8 7 6 10 10 C 1.36193 * 124.15451 * 180.29290 * 2 1 3 11 11 C 1.46423 * 126.86053 * 359.97438 * 10 2 1 12 12 O 1.21726 * 119.99888 * 98.45891 * 11 10 2 13 13 N 1.34773 * 120.00152 * 278.45703 * 11 10 2 14 14 C 1.46504 * 120.00048 * 185.15171 * 13 11 10 15 15 H 1.09000 * 109.20463 * 35.64471 * 14 13 11 16 16 C 1.50132 * 109.20634 * 155.00498 * 14 13 11 17 17 C 1.52534 * 105.41229 * 218.02652 * 16 14 13 18 18 C 1.46239 * 114.27612 * 270.59461 * 17 16 14 19 19 N 1.50164 * 107.53301 * 58.41069 * 18 17 16 20 20 C 1.36936 * 120.54067 * 109.56534 * 19 18 17 21 21 H 1.08005 * 119.99655 * 318.39366 * 20 19 18 22 22 C 1.38810 * 120.00363 * 138.38734 * 20 19 18 23 23 N 1.31614 * 120.00159 * 161.81506 * 22 20 19 24 24 Si 1.86801 * 119.99745 * 341.81524 * 22 20 19 25 25 H 1.48498 * 109.47033 * 88.23253 * 24 22 20 26 26 H 1.48501 * 109.47180 * 208.22973 * 24 22 20 27 27 H 1.48501 * 109.47277 * 328.23134 * 24 22 20 28 28 C 1.43434 * 118.92573 * 289.58623 * 19 18 17 29 29 C 1.54839 * 109.20851 * 276.32780 * 14 13 11 30 30 H 1.08998 * 109.47556 * 264.38704 * 1 2 3 31 31 H 1.09007 * 109.47258 * 144.38268 * 1 2 3 32 32 H 1.08999 * 109.47165 * 24.38947 * 1 2 3 33 33 H 1.08000 * 120.22391 * 0.36766 * 5 4 3 34 34 H 1.08006 * 119.08206 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.22103 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.26370 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00577 * 5.15897 * 13 11 10 38 38 H 1.09002 * 110.24796 * 337.00095 * 16 14 13 39 39 H 1.09001 * 110.25048 * 99.05750 * 16 14 13 40 40 H 1.08999 * 108.52391 * 31.84112 * 17 16 14 41 41 H 1.09000 * 108.51829 * 149.50859 * 17 16 14 42 42 H 1.08997 * 109.83985 * 177.91735 * 18 17 16 43 43 H 1.09004 * 109.84607 * 298.83288 * 18 17 16 44 44 H 0.96997 * 120.00456 * 180.02562 * 23 22 20 45 45 H 1.09001 * 108.16182 * 213.28872 * 28 19 18 46 46 H 1.09006 * 108.15912 * 330.06329 * 28 19 18 47 47 H 1.08998 * 109.36137 * 320.98854 * 29 14 13 48 48 H 1.08994 * 109.36185 * 80.58446 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0629 0.0000 4 6 3.4749 0.7709 0.0041 5 6 4.6726 1.5138 0.0079 6 6 5.8645 0.8628 0.0047 7 6 5.9424 -0.5299 -0.0028 8 6 4.8245 -1.3058 -0.0069 9 6 3.5632 -0.6971 -0.0028 10 6 2.2296 -1.1270 -0.0058 11 6 1.7533 -2.5116 -0.0123 12 8 1.7015 -3.1325 -1.0580 13 7 1.3722 -3.0986 1.1394 14 6 1.0032 -4.5163 1.1520 15 1 1.6347 -5.0574 0.4473 16 6 1.2156 -5.0698 2.5313 17 6 1.7568 -6.4806 2.3231 18 6 0.7249 -7.5124 2.2274 19 7 -0.1728 -7.1493 1.0797 20 6 -0.1596 -7.8863 -0.0743 21 1 0.7787 -8.2268 -0.4868 22 6 -1.3521 -8.1960 -0.7138 23 7 -1.3436 -8.5772 -1.9735 24 14 -2.9689 -8.0717 0.2135 25 1 -3.5054 -6.6925 0.0902 26 1 -3.9433 -9.0349 -0.3592 27 1 -2.7433 -8.3888 1.6466 28 6 -1.0441 -6.0175 1.2116 29 6 -0.4775 -4.6612 0.7229 30 1 -0.3634 -0.1005 1.0227 31 1 -0.3634 -0.8355 -0.5985 32 1 -0.3633 0.9359 -0.4244 33 1 4.6427 2.5934 0.0138 34 1 6.7777 1.4395 0.0081 35 1 6.9129 -1.0036 -0.0047 36 1 4.9094 -2.3825 -0.0123 37 1 1.3420 -2.5824 1.9602 38 1 1.9413 -4.4635 3.0734 39 1 0.2707 -5.1045 3.0735 40 1 2.3458 -6.4938 1.4060 41 1 2.4128 -6.7265 3.1581 42 1 1.1873 -8.4821 2.0431 43 1 0.1492 -7.5469 3.1523 44 1 -2.1768 -8.7932 -2.4206 45 1 -1.9573 -6.2250 0.6538 46 1 -1.3080 -5.9128 2.2640 47 1 -1.0605 -3.8488 1.1566 48 1 -0.5453 -4.6119 -0.3638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052844009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:46 Heat of formation + Delta-G solvation = 75.722277 kcal Electronic energy + Delta-G solvation = -30312.924727 eV Core-core repulsion = 26369.703131 eV Total energy + Delta-G solvation = -3943.221597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.57911 -41.07516 -39.44173 -38.69037 -36.42982 -34.65577 -33.88292 -33.16982 -33.11166 -32.19895 -30.48274 -28.54752 -28.06363 -26.03338 -25.32215 -24.35481 -23.48384 -23.22856 -21.85129 -21.22761 -20.73005 -19.04937 -18.55078 -18.46712 -17.91200 -17.53487 -17.23752 -16.89629 -16.38588 -16.06704 -15.91208 -15.42460 -15.21670 -15.12822 -14.92759 -14.78375 -14.46496 -14.25655 -14.21065 -13.89853 -13.84121 -13.60527 -13.33661 -12.83183 -12.74717 -12.70462 -12.67658 -12.46587 -12.23107 -12.11110 -11.83494 -11.64934 -11.50177 -11.41082 -11.33341 -11.25025 -11.22446 -10.57721 -10.19910 -9.69836 -8.80460 -8.64406 -8.17668 -5.64880 -0.51393 0.60680 0.87087 1.26573 1.30119 1.40143 1.47512 1.52448 2.04115 2.42483 2.81258 3.03653 3.06581 3.33308 3.34478 3.80959 3.86114 3.94781 3.97687 4.10661 4.12308 4.15198 4.21073 4.35130 4.37878 4.40941 4.43294 4.52854 4.55456 4.67053 4.79540 4.80815 4.87019 4.95653 5.04176 5.08047 5.14177 5.19527 5.31464 5.35257 5.37191 5.46856 5.48756 5.54654 5.59946 5.60377 5.97017 5.97757 6.19036 6.31243 6.77193 6.96985 7.04156 7.64497 8.08923 9.01794 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002897 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.380561 B = 9662.373323 C =10168.688087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.214 5.214 3 N -0.296 5.296 4 C 0.036 3.964 5 C -0.087 4.087 6 C -0.093 4.093 7 C -0.115 4.115 8 C -0.095 4.095 9 C -0.142 4.142 10 C -0.042 4.042 11 C 0.595 3.405 12 O -0.564 6.564 13 N -0.690 5.690 14 C 0.166 3.834 15 H 0.048 0.952 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.133 3.867 19 N -0.614 5.614 20 C -0.254 4.254 21 H 0.026 0.974 22 C -0.027 4.027 23 N -0.958 5.958 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.313 1.313 27 H -0.250 1.250 28 C 0.138 3.862 29 C -0.142 4.142 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.261 0.739 45 H 0.020 0.980 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 21.897 14.461 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N 0.002 4.998 3 N -0.134 5.134 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.115 4.115 9 C -0.150 4.150 10 C -0.178 4.178 11 C 0.378 3.622 12 O -0.440 6.440 13 N -0.342 5.342 14 C 0.062 3.938 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.167 4.167 18 C 0.011 3.989 19 N -0.338 5.338 20 C -0.384 4.384 21 H 0.044 0.956 22 C -0.222 4.222 23 N -0.602 5.602 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.242 1.242 27 H -0.174 1.174 28 C 0.011 3.989 29 C -0.183 4.183 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.135 0.865 37 H 0.254 0.746 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.173 22.274 13.628 27.361 hybrid contribution -0.527 -1.010 -0.675 1.324 sum 7.645 21.264 12.953 26.046 Atomic orbital electron populations 1.22815 0.70371 1.07231 1.07180 1.46011 1.09280 1.00907 1.43585 1.73367 1.03813 1.11026 1.25189 1.21081 0.91831 0.92312 1.05525 1.20280 0.87996 1.00300 1.02137 1.21062 0.98235 0.94305 0.97907 1.21088 0.98555 0.94262 0.99463 1.20263 0.90244 0.99888 1.01088 1.19670 0.92154 0.94664 1.08560 1.20918 0.91943 0.88455 1.16482 1.16945 0.76851 0.84119 0.84310 1.90954 1.54414 1.65528 1.33141 1.46229 1.65716 1.12179 1.10088 1.21030 0.95205 0.78718 0.98851 0.93350 1.21314 1.03407 0.95951 0.93902 1.20757 0.99086 0.95423 1.01407 1.20664 0.91846 0.96997 0.89397 1.44349 1.48435 1.27757 1.13299 1.18553 0.91554 1.28436 0.99872 0.95613 1.26311 1.02181 0.97521 0.96224 1.70005 1.28010 1.50770 1.11423 0.85677 0.79052 0.76375 0.80108 1.19811 1.24166 1.17393 1.20857 0.92348 0.86456 0.99223 1.23117 0.96158 0.99545 0.99525 0.85635 0.89020 0.85577 0.83119 0.81638 0.82919 0.86509 0.74555 0.88258 0.88841 0.94869 0.89421 0.92743 0.91735 0.92978 0.96212 0.90987 0.89283 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 10.99 127.77 1.40 2.36 16 2 N -0.21 -5.15 3.71 -355.61 -1.32 -6.47 16 3 N -0.30 -7.65 11.88 -48.85 -0.58 -8.23 16 4 C 0.04 0.93 7.53 42.08 0.32 1.25 16 5 C -0.09 -1.62 10.09 22.37 0.23 -1.40 16 6 C -0.09 -1.39 9.89 22.01 0.22 -1.18 16 7 C -0.11 -2.02 9.92 22.07 0.22 -1.80 16 8 C -0.09 -2.32 10.06 22.21 0.22 -2.09 16 9 C -0.14 -3.97 6.41 -20.07 -0.13 -4.10 16 10 C -0.04 -1.19 6.70 41.05 0.28 -0.91 16 11 C 0.59 19.10 6.97 86.37 0.60 19.71 16 12 O -0.56 -24.82 16.83 -4.43 -0.07 -24.89 16 13 N -0.69 -17.50 4.97 -448.15 -2.23 -19.73 16 14 C 0.17 5.17 2.18 44.69 0.10 5.27 16 15 H 0.05 2.03 6.35 -2.39 -0.02 2.02 16 16 C -0.11 -2.50 5.34 29.52 0.16 -2.35 16 17 C -0.13 -3.62 5.20 28.36 0.15 -3.47 16 18 C 0.13 4.63 6.11 83.58 0.51 5.14 16 19 N -0.61 -27.78 2.13 -707.83 -1.51 -29.28 16 20 C -0.25 -14.70 9.95 84.03 0.84 -13.86 16 21 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 22 C -0.03 -1.59 5.36 84.86 0.45 -1.14 16 23 N -0.96 -62.36 13.97 21.65 0.30 -62.06 16 24 Si 0.96 46.66 25.25 68.60 1.73 48.39 16 25 H -0.27 -12.46 6.47 99.48 0.64 -11.82 16 26 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 27 H -0.25 -11.20 7.11 99.48 0.71 -10.50 16 28 C 0.14 5.49 4.16 87.60 0.36 5.86 16 29 C -0.14 -5.06 5.98 31.87 0.19 -4.87 16 30 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.60 7.85 -2.38 -0.02 1.59 16 32 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.42 7.20 8.46 -92.71 -0.78 6.41 16 38 H 0.10 1.66 7.85 -2.39 -0.02 1.64 16 39 H 0.09 1.91 6.28 -2.39 -0.01 1.89 16 40 H 0.03 1.16 6.93 -2.39 -0.02 1.15 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 2.02 7.99 -2.39 -0.02 2.00 16 43 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 44 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 45 H 0.02 0.91 3.02 -2.39 -0.01 0.90 16 46 H 0.07 2.28 6.88 -2.38 -0.02 2.27 16 47 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -85.40 381.29 2.58 -82.82 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.14 Total: 17.06 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.11 Total: 2.40 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.33 Total: -125.77 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.73 Total: 48.39 kcal Total: -85.40 2.58 -82.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052844009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.538 kcal (2) G-P(sol) polarization free energy of solvation -85.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds