Wall clock time and date at job start Wed Apr 1 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28386 * 124.37534 * 2 1 4 4 C 1.31572 * 111.96795 * 180.02562 * 3 2 1 5 5 C 1.47380 * 126.82388 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00268 * 180.02562 * 5 4 3 7 7 N 1.34771 * 120.00257 * 0.02562 * 5 4 3 8 8 C 1.46506 * 120.00361 * 180.02562 * 7 5 4 9 9 H 1.08996 * 108.44689 * 327.31144 * 8 7 5 10 10 C 1.52567 * 108.51046 * 209.76947 * 8 7 5 11 11 C 1.50889 * 109.35507 * 153.73341 * 10 8 7 12 12 C 1.54296 * 110.23291 * 91.79843 * 11 10 8 13 13 N 1.47605 * 111.94216 * 319.69871 * 12 11 10 14 14 C 1.36940 * 118.64474 * 137.78426 * 13 12 11 15 15 H 1.07996 * 120.00310 * 206.98086 * 14 13 12 16 16 C 1.38812 * 119.99846 * 26.69551 * 14 13 12 17 17 N 1.31620 * 119.99760 * 17.03740 * 16 14 13 18 18 Si 1.86799 * 119.99920 * 197.02671 * 16 14 13 19 19 H 1.48506 * 109.46887 * 90.00822 * 18 16 14 20 20 H 1.48500 * 109.46966 * 210.00161 * 18 16 14 21 21 H 1.48493 * 109.47312 * 330.00519 * 18 16 14 22 22 C 1.44575 * 122.71525 * 317.49662 * 13 12 11 23 23 C 1.47085 * 108.51146 * 85.00432 * 8 7 5 24 24 C 1.46889 * 106.35102 * 0.23809 * 4 3 2 25 25 C 1.39187 * 135.56032 * 179.73818 * 24 4 3 26 26 C 1.36719 * 119.50803 * 180.02562 * 25 24 4 27 27 C 1.38896 * 120.52489 * 359.97438 * 26 25 24 28 28 C 1.36683 * 120.89507 * 359.61453 * 27 26 25 29 29 C 1.37051 * 124.37027 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46625 * 89.97520 * 1 2 3 31 31 H 1.08993 * 109.47644 * 209.97873 * 1 2 3 32 32 H 1.09001 * 109.46665 * 329.98268 * 1 2 3 33 33 H 0.97003 * 119.99879 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.48977 * 273.69501 * 10 8 7 35 35 H 1.08994 * 109.49423 * 33.77181 * 10 8 7 36 36 H 1.09003 * 109.36485 * 212.07065 * 11 10 8 37 37 H 1.08996 * 109.36648 * 331.82281 * 11 10 8 38 38 H 1.08994 * 109.14003 * 199.01230 * 12 11 10 39 39 H 1.09002 * 108.96236 * 80.26344 * 12 11 10 40 40 H 0.97007 * 119.99759 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.45602 * 211.02575 * 22 13 12 42 42 H 1.09002 * 109.45229 * 330.97778 * 22 13 12 43 43 H 1.08994 * 109.33318 * 63.79383 * 23 8 7 44 44 H 1.09012 * 109.19005 * 304.22665 * 23 8 7 45 45 H 1.08000 * 120.24615 * 0.04529 * 25 24 4 46 46 H 1.08009 * 119.73488 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.55212 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.10733 * 179.89924 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1899 1.0596 0.0000 4 6 3.4749 0.7769 -0.0005 5 6 4.5911 1.7393 -0.0012 6 8 5.7394 1.3388 -0.0022 7 7 4.3393 3.0633 -0.0008 8 6 5.4489 4.0201 -0.0021 9 1 6.2790 3.5862 0.5553 10 6 4.9965 5.2874 0.7168 11 6 6.1995 5.9899 1.2965 12 6 6.7508 7.0219 0.2907 13 7 6.7272 6.5099 -1.0935 14 6 6.3225 7.3492 -2.0971 15 1 5.8815 6.9434 -2.9955 16 6 6.4736 8.7219 -1.9570 17 7 7.2891 9.2044 -1.0434 18 14 5.5200 9.8845 -3.0654 19 1 4.2172 10.2138 -2.4332 20 1 6.3022 11.1308 -3.2654 21 1 5.2824 9.2330 -4.3785 22 6 7.1195 5.1608 -1.4345 23 6 5.8802 4.2331 -1.3921 24 6 3.5759 -0.6885 -0.0068 25 6 4.6165 -1.6128 -0.0147 26 6 4.3297 -2.9496 -0.0194 27 6 3.0119 -3.3884 -0.0159 28 6 1.9755 -2.4974 0.0003 29 6 2.2387 -1.1312 -0.0005 30 1 -0.3632 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8899 0.5141 33 1 3.4235 3.3829 0.0003 34 1 4.4957 5.9479 0.0091 35 1 4.3075 5.0241 1.5193 36 1 5.9120 6.4996 2.2162 37 1 6.9750 5.2565 1.5169 38 1 7.7779 7.2691 0.5591 39 1 6.1453 7.9267 0.3437 40 1 7.3950 10.1637 -0.9458 41 1 7.5473 5.1495 -2.4370 42 1 7.8619 4.8069 -0.7191 43 1 5.0675 4.6908 -1.9559 44 1 6.1335 3.2721 -1.8400 45 1 5.6428 -1.2766 -0.0168 46 1 5.1343 -3.6701 -0.0251 47 1 2.8033 -4.4481 -0.0201 48 1 0.9556 -2.8526 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052877196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:50 Heat of formation + Delta-G solvation = 82.098239 kcal Electronic energy + Delta-G solvation = -29690.389841 eV Core-core repulsion = 25747.444727 eV Total energy + Delta-G solvation = -3942.945114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.68569 -39.64457 -38.02901 -37.52242 -34.73347 -33.87767 -32.37921 -31.54911 -30.82870 -30.45565 -29.93407 -27.53973 -25.97813 -24.35059 -23.80543 -23.28069 -22.47995 -21.99840 -20.13119 -19.87724 -19.16754 -18.00182 -17.45853 -16.64144 -16.56610 -16.17726 -15.74268 -15.50018 -15.06445 -14.58173 -14.41170 -14.32809 -13.95719 -13.82112 -13.52096 -13.40722 -13.23593 -13.16294 -12.71072 -12.47617 -12.23233 -12.20413 -11.90468 -11.45239 -11.35765 -11.21834 -11.10989 -10.81153 -10.68254 -10.42122 -10.25041 -10.18463 -10.06043 -9.91956 -9.71923 -9.67297 -9.53741 -9.01775 -8.78038 -8.35296 -8.20697 -6.60691 -5.73630 -3.16809 0.61618 1.12031 1.77013 2.07417 3.25950 3.29127 3.39822 3.47181 3.48247 3.63924 3.99852 4.15845 4.54155 4.57250 4.67138 4.70863 4.73891 4.91035 4.97100 5.13877 5.20682 5.31867 5.38629 5.45269 5.52091 5.68166 5.69440 5.80334 5.97031 6.08395 6.11813 6.18219 6.26896 6.28171 6.39147 6.43719 6.53236 6.56128 6.63768 6.72072 6.81215 6.87961 6.89966 6.98211 7.11808 7.47306 7.52970 7.74594 7.82128 7.87862 8.37266 8.52563 9.29276 9.96556 10.42235 11.33683 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002394 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.115141 B =11691.582342 C =12248.089444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.320 5.320 3 N -0.211 5.211 4 C 0.007 3.993 5 C 0.602 3.398 6 O -0.532 6.532 7 N -0.712 5.712 8 C 0.161 3.839 9 H 0.077 0.923 10 C -0.111 4.111 11 C -0.140 4.140 12 C 0.177 3.823 13 N -0.590 5.590 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.903 5.903 18 Si 0.898 3.102 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.163 3.837 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.040 4.040 26 C -0.144 4.144 27 C -0.084 4.084 28 C -0.122 4.122 29 C 0.063 3.937 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.140 0.860 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 -23.367 5.010 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.113 5.113 3 N -0.040 5.040 4 C -0.164 4.164 5 C 0.385 3.615 6 O -0.407 6.407 7 N -0.362 5.362 8 C 0.059 3.941 9 H 0.095 0.905 10 C -0.150 4.150 11 C -0.180 4.180 12 C 0.052 3.948 13 N -0.312 5.312 14 C -0.386 4.386 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.219 1.219 21 H -0.205 1.205 22 C 0.034 3.966 23 C -0.196 4.196 24 C -0.117 4.117 25 C -0.060 4.060 26 C -0.163 4.163 27 C -0.105 4.105 28 C -0.143 4.143 29 C -0.048 4.048 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.236 0.764 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.158 0.842 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.868 -22.537 5.067 26.942 hybrid contribution -0.778 0.181 -0.585 0.990 sum -14.646 -22.356 4.482 27.099 Atomic orbital electron populations 1.22085 0.73104 1.05225 1.04223 1.45131 1.07127 1.00910 1.58125 1.72883 1.03924 1.13839 1.13375 1.22933 0.90294 0.92441 1.10690 1.16647 0.86204 0.81650 0.76979 1.90790 1.20408 1.78807 1.50688 1.46360 1.11280 1.05090 1.73425 1.20101 0.88057 0.87934 0.98003 0.90503 1.21241 0.98726 0.95765 0.99225 1.22028 0.96667 0.99804 0.99471 1.21081 0.98654 0.93577 0.81443 1.43687 1.76430 1.08055 1.02991 1.19206 1.33303 0.87578 0.98535 0.91774 1.25021 0.98161 0.97638 0.98606 1.70083 1.36104 1.11933 1.36619 0.86348 0.79660 0.80691 0.80428 1.21561 1.21858 1.20507 1.20567 0.92107 0.85324 0.98595 1.21882 1.02169 1.00161 0.95396 1.19466 0.93016 0.91928 1.07315 1.20456 0.99026 0.91587 0.94918 1.20851 0.96752 0.95450 1.03291 1.20730 0.92258 0.99357 0.98166 1.19730 1.00033 0.88396 1.06158 1.19176 0.90616 0.90045 1.05008 0.90043 0.89013 0.88476 0.76446 0.90053 0.93099 0.92547 0.93323 0.95587 0.90943 0.93742 0.93290 0.94724 0.91901 0.92815 0.84231 0.85243 0.85215 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.24 59.85 0.67 1.18 16 2 N -0.32 -3.40 3.74 -65.50 -0.24 -3.65 16 3 N -0.21 -2.77 11.52 34.46 0.40 -2.37 16 4 C 0.01 0.11 7.32 -80.76 -0.59 -0.49 16 5 C 0.60 9.98 7.65 -12.54 -0.10 9.88 16 6 O -0.53 -10.12 15.89 5.26 0.08 -10.04 16 7 N -0.71 -11.11 4.88 -57.91 -0.28 -11.39 16 8 C 0.16 2.81 1.96 -70.99 -0.14 2.68 16 9 H 0.08 1.44 6.65 -51.93 -0.35 1.10 16 10 C -0.11 -1.94 5.00 -28.01 -0.14 -2.08 16 11 C -0.14 -2.62 5.71 -27.11 -0.15 -2.78 16 12 C 0.18 4.18 4.71 -2.76 -0.01 4.17 16 13 N -0.59 -14.49 2.26 -171.87 -0.39 -14.88 16 14 C -0.26 -6.93 9.43 -15.06 -0.14 -7.07 16 15 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.12 4.83 -17.43 -0.08 0.03 16 17 N -0.90 -26.05 11.12 55.49 0.62 -25.43 16 18 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.16 3.51 5.65 -4.08 -0.02 3.49 16 23 C -0.15 -2.94 5.20 -28.58 -0.15 -3.09 16 24 C -0.11 -1.49 6.34 -105.05 -0.67 -2.16 16 25 C -0.04 -0.48 9.87 -39.78 -0.39 -0.87 16 26 C -0.14 -1.30 9.98 -39.89 -0.40 -1.69 16 27 C -0.08 -0.64 9.96 -39.90 -0.40 -1.04 16 28 C -0.12 -1.00 9.94 -39.81 -0.40 -1.40 16 29 C 0.06 0.71 6.85 -84.21 -0.58 0.13 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.40 5.60 8.35 -40.82 -0.34 5.26 16 34 H 0.08 1.58 7.49 -51.93 -0.39 1.20 16 35 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16 38 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.07 1.89 6.39 -51.93 -0.33 1.56 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.05 1.08 7.99 -51.93 -0.41 0.66 16 42 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 1.02 7.94 -51.92 -0.41 0.60 16 45 H 0.14 1.74 7.65 -52.49 -0.40 1.33 16 46 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 47 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -32.83 386.89 -9.90 -42.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.20 Total: 3.66 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.69 Total: -1.11 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.10 Total: -57.72 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.83 -9.90 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052877196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.823 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds