Wall clock time and date at job start Wed Apr 1 2020 04:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28386 * 124.37534 * 2 1 4 4 C 1.31572 * 111.96795 * 180.02562 * 3 2 1 5 5 C 1.47380 * 126.82388 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00268 * 180.02562 * 5 4 3 7 7 N 1.34771 * 120.00257 * 0.02562 * 5 4 3 8 8 C 1.46506 * 120.00361 * 180.02562 * 7 5 4 9 9 H 1.08996 * 108.44689 * 327.31144 * 8 7 5 10 10 C 1.52567 * 108.51046 * 209.76947 * 8 7 5 11 11 C 1.50889 * 109.35507 * 153.73341 * 10 8 7 12 12 C 1.54296 * 110.23291 * 91.79843 * 11 10 8 13 13 N 1.47605 * 111.94216 * 319.69871 * 12 11 10 14 14 C 1.36940 * 118.64474 * 137.78426 * 13 12 11 15 15 H 1.07996 * 120.00310 * 206.98086 * 14 13 12 16 16 C 1.38812 * 119.99846 * 26.69551 * 14 13 12 17 17 N 1.31620 * 119.99760 * 17.03740 * 16 14 13 18 18 Si 1.86799 * 119.99920 * 197.02671 * 16 14 13 19 19 H 1.48506 * 109.46887 * 90.00822 * 18 16 14 20 20 H 1.48500 * 109.46966 * 210.00161 * 18 16 14 21 21 H 1.48493 * 109.47312 * 330.00519 * 18 16 14 22 22 C 1.44575 * 122.71525 * 317.49662 * 13 12 11 23 23 C 1.47085 * 108.51146 * 85.00432 * 8 7 5 24 24 C 1.46889 * 106.35102 * 0.23809 * 4 3 2 25 25 C 1.39187 * 135.56032 * 179.73818 * 24 4 3 26 26 C 1.36719 * 119.50803 * 180.02562 * 25 24 4 27 27 C 1.38896 * 120.52489 * 359.97438 * 26 25 24 28 28 C 1.36683 * 120.89507 * 359.61453 * 27 26 25 29 29 C 1.37051 * 124.37027 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46625 * 89.97520 * 1 2 3 31 31 H 1.08993 * 109.47644 * 209.97873 * 1 2 3 32 32 H 1.09001 * 109.46665 * 329.98268 * 1 2 3 33 33 H 0.97003 * 119.99879 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.48977 * 273.69501 * 10 8 7 35 35 H 1.08994 * 109.49423 * 33.77181 * 10 8 7 36 36 H 1.09003 * 109.36485 * 212.07065 * 11 10 8 37 37 H 1.08996 * 109.36648 * 331.82281 * 11 10 8 38 38 H 1.08994 * 109.14003 * 199.01230 * 12 11 10 39 39 H 1.09002 * 108.96236 * 80.26344 * 12 11 10 40 40 H 0.97007 * 119.99759 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.45602 * 211.02575 * 22 13 12 42 42 H 1.09002 * 109.45229 * 330.97778 * 22 13 12 43 43 H 1.08994 * 109.33318 * 63.79383 * 23 8 7 44 44 H 1.09012 * 109.19005 * 304.22665 * 23 8 7 45 45 H 1.08000 * 120.24615 * 0.04529 * 25 24 4 46 46 H 1.08009 * 119.73488 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.55212 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.10733 * 179.89924 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1899 1.0596 0.0000 4 6 3.4749 0.7769 -0.0005 5 6 4.5911 1.7393 -0.0012 6 8 5.7394 1.3388 -0.0022 7 7 4.3393 3.0633 -0.0008 8 6 5.4489 4.0201 -0.0021 9 1 6.2790 3.5862 0.5553 10 6 4.9965 5.2874 0.7168 11 6 6.1995 5.9899 1.2965 12 6 6.7508 7.0219 0.2907 13 7 6.7272 6.5099 -1.0935 14 6 6.3225 7.3492 -2.0971 15 1 5.8815 6.9434 -2.9955 16 6 6.4736 8.7219 -1.9570 17 7 7.2891 9.2044 -1.0434 18 14 5.5200 9.8845 -3.0654 19 1 4.2172 10.2138 -2.4332 20 1 6.3022 11.1308 -3.2654 21 1 5.2824 9.2330 -4.3785 22 6 7.1195 5.1608 -1.4345 23 6 5.8802 4.2331 -1.3921 24 6 3.5759 -0.6885 -0.0068 25 6 4.6165 -1.6128 -0.0147 26 6 4.3297 -2.9496 -0.0194 27 6 3.0119 -3.3884 -0.0159 28 6 1.9755 -2.4974 0.0003 29 6 2.2387 -1.1312 -0.0005 30 1 -0.3632 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8899 0.5141 33 1 3.4235 3.3829 0.0003 34 1 4.4957 5.9479 0.0091 35 1 4.3075 5.0241 1.5193 36 1 5.9120 6.4996 2.2162 37 1 6.9750 5.2565 1.5169 38 1 7.7779 7.2691 0.5591 39 1 6.1453 7.9267 0.3437 40 1 7.3950 10.1637 -0.9458 41 1 7.5473 5.1495 -2.4370 42 1 7.8619 4.8069 -0.7191 43 1 5.0675 4.6908 -1.9559 44 1 6.1335 3.2721 -1.8400 45 1 5.6428 -1.2766 -0.0168 46 1 5.1343 -3.6701 -0.0251 47 1 2.8033 -4.4481 -0.0201 48 1 0.9556 -2.8526 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052877196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:48 Heat of formation + Delta-G solvation = 62.101912 kcal Electronic energy + Delta-G solvation = -29691.256947 eV Core-core repulsion = 25747.444727 eV Total energy + Delta-G solvation = -3943.812220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.51787 -41.02015 -39.12053 -38.74660 -36.39676 -34.72503 -34.01393 -33.31236 -31.82728 -31.50706 -31.05177 -28.50335 -27.67335 -25.79879 -25.27229 -24.55256 -23.40297 -22.95149 -21.56847 -21.26528 -20.74515 -18.99460 -18.60336 -18.20826 -17.38354 -17.19561 -17.13690 -16.88330 -16.18994 -15.94018 -15.74514 -15.52211 -15.25766 -15.14089 -15.05760 -14.65050 -14.31357 -14.16445 -13.89891 -13.61001 -13.56692 -13.19621 -13.02117 -12.92538 -12.85667 -12.71690 -12.42449 -12.24187 -12.13723 -12.05705 -11.98914 -11.75283 -11.56225 -11.51771 -11.34944 -11.10632 -11.00915 -10.44165 -10.15496 -9.78343 -8.98408 -8.64343 -7.83716 -5.29971 -0.22796 0.35943 0.84619 1.38350 1.47261 1.48329 1.57139 2.07228 2.21466 2.53217 2.80720 3.16035 3.29409 3.41375 3.65413 3.70154 3.79272 4.06870 4.09955 4.14379 4.30839 4.34049 4.38154 4.43400 4.44257 4.44532 4.48861 4.64435 4.67830 4.76726 4.76995 4.93186 4.98142 5.01933 5.11570 5.14432 5.21194 5.23945 5.31098 5.45472 5.47089 5.51112 5.57593 5.58454 5.69897 5.70947 5.81771 5.97734 6.41387 6.43879 6.77938 7.12990 7.20580 7.96041 8.36131 9.21462 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002394 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.115141 B =11691.582342 C =12248.089444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.309 5.309 3 N -0.211 5.211 4 C -0.036 4.036 5 C 0.602 3.398 6 O -0.567 6.567 7 N -0.704 5.704 8 C 0.169 3.831 9 H 0.067 0.933 10 C -0.101 4.101 11 C -0.128 4.128 12 C 0.187 3.813 13 N -0.601 5.601 14 C -0.263 4.263 15 H 0.062 0.938 16 C -0.046 4.046 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.161 3.839 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.077 4.077 26 C -0.131 4.131 27 C -0.082 4.082 28 C -0.110 4.110 29 C 0.049 3.951 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.411 0.589 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.055 0.945 38 H -0.005 1.005 39 H 0.044 0.956 40 H 0.249 0.751 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.118 0.882 46 H 0.153 0.847 47 H 0.171 0.829 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.173 -26.317 5.295 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.104 5.104 3 N -0.043 5.043 4 C -0.204 4.204 5 C 0.387 3.613 6 O -0.444 6.444 7 N -0.354 5.354 8 C 0.066 3.934 9 H 0.085 0.915 10 C -0.139 4.139 11 C -0.168 4.168 12 C 0.062 3.938 13 N -0.323 5.323 14 C -0.393 4.393 15 H 0.080 0.920 16 C -0.242 4.242 17 N -0.580 5.580 18 Si 0.791 3.209 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.033 3.967 23 C -0.177 4.177 24 C -0.146 4.146 25 C -0.098 4.098 26 C -0.150 4.150 27 C -0.102 4.102 28 C -0.131 4.131 29 C -0.063 4.063 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.247 0.753 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.014 0.986 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.136 0.864 46 H 0.170 0.830 47 H 0.188 0.812 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.217 -25.516 5.348 31.242 hybrid contribution 0.192 0.924 -0.690 1.169 sum -17.024 -24.592 4.658 30.270 Atomic orbital electron populations 1.22580 0.70090 1.07257 1.05892 1.45647 1.08652 1.00244 1.55807 1.72789 1.03501 1.15104 1.12902 1.22589 0.90421 0.92882 1.14482 1.16921 0.86448 0.81910 0.75973 1.90755 1.21971 1.79370 1.52292 1.46149 1.11157 1.04688 1.73437 1.19836 0.88530 0.88410 0.96636 0.91533 1.21121 0.98349 0.94872 0.99532 1.21884 0.97289 0.98806 0.98789 1.20881 0.96590 0.94174 0.82181 1.43863 1.76658 1.08701 1.03095 1.19454 1.32702 0.88204 0.98966 0.92013 1.25728 0.99149 0.99012 1.00276 1.70236 1.37587 1.11800 1.38350 0.85345 0.78202 0.78355 0.79009 1.21065 1.22308 1.19697 1.20637 0.93342 0.84587 0.98104 1.21626 1.00419 0.99077 0.96553 1.19746 0.94905 0.91548 1.08442 1.20470 0.98029 0.93098 0.98166 1.21217 0.98649 0.94389 1.00792 1.21225 0.91148 1.01363 0.96498 1.20258 1.02272 0.86813 1.03779 1.19520 0.89609 0.91344 1.05779 0.88477 0.85849 0.87730 0.75336 0.91970 0.90126 0.90296 0.92614 0.98648 0.93770 0.94190 0.94256 0.94304 0.92810 0.92884 0.86382 0.82955 0.81178 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.24 127.77 1.44 2.03 16 2 N -0.31 -5.92 3.74 -361.13 -1.35 -7.27 16 3 N -0.21 -5.40 11.52 -44.88 -0.52 -5.92 16 4 C -0.04 -1.08 7.32 43.86 0.32 -0.76 16 5 C 0.60 20.68 7.65 86.65 0.66 21.34 16 6 O -0.57 -22.70 15.89 -4.09 -0.06 -22.77 16 7 N -0.70 -22.16 4.88 -455.39 -2.22 -24.39 16 8 C 0.17 5.94 1.96 43.01 0.08 6.03 16 9 H 0.07 2.53 6.65 -2.39 -0.02 2.51 16 10 C -0.10 -3.43 5.00 29.76 0.15 -3.29 16 11 C -0.13 -4.77 5.71 30.35 0.17 -4.60 16 12 C 0.19 9.07 4.71 86.61 0.41 9.48 16 13 N -0.60 -30.39 2.26 -697.69 -1.58 -31.97 16 14 C -0.26 -14.53 9.43 84.03 0.79 -13.74 16 15 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 16 C -0.05 -2.59 4.83 84.86 0.41 -2.18 16 17 N -0.93 -55.50 11.12 21.65 0.24 -55.26 16 18 Si 0.96 45.31 29.59 68.60 2.03 47.34 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.16 7.15 5.65 87.38 0.49 7.65 16 23 C -0.14 -5.27 5.20 29.39 0.15 -5.12 16 24 C -0.14 -3.81 6.34 -20.14 -0.13 -3.93 16 25 C -0.08 -1.90 9.87 22.14 0.22 -1.68 16 26 C -0.13 -2.11 9.98 22.07 0.22 -1.89 16 27 C -0.08 -0.91 9.96 22.06 0.22 -0.69 16 28 C -0.11 -1.36 9.94 22.12 0.22 -1.14 16 29 C 0.05 1.00 6.85 39.18 0.27 1.27 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 0.15 8.09 -2.39 -0.02 0.13 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.41 11.34 8.35 -92.71 -0.77 10.56 16 34 H 0.06 2.40 7.49 -2.39 -0.02 2.39 16 35 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.06 2.01 7.31 -2.39 -0.02 1.99 16 38 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 39 H 0.04 2.38 6.39 -2.39 -0.02 2.36 16 40 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 41 H 0.04 1.79 7.99 -2.39 -0.02 1.77 16 42 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 43 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 2.07 7.94 -2.38 -0.02 2.05 16 45 H 0.12 3.25 7.65 -2.91 -0.02 3.23 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 48 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -75.46 386.89 2.84 -72.62 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.20 Total: 18.85 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.10 Total: 8.76 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -5.43 Total: -124.80 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.46 2.84 -72.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052877196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.721 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds