Wall clock time and date at job start Wed Apr 1 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46751 * 2 1 4 4 C 1.42896 * 113.99775 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.90955 * 21.74154 * 4 3 2 6 6 C 1.53787 * 113.61435 * 250.49176 * 4 3 2 7 7 C 1.53778 * 87.08035 * 220.01917 * 6 4 3 8 8 H 1.09004 * 113.61682 * 270.87724 * 7 6 4 9 9 N 1.46504 * 113.61214 * 139.97990 * 7 6 4 10 10 C 1.34783 * 119.99746 * 104.50187 * 9 7 6 11 11 O 1.21353 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.49448 * 119.99585 * 180.02562 * 10 9 7 13 13 O 1.21344 * 120.00528 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99585 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99746 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.46778 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46781 * 299.99891 * 16 15 14 18 18 C 1.52996 * 109.46948 * 60.00153 * 16 15 14 19 19 C 1.50701 * 109.46765 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00231 * 359.97438 * 19 16 15 21 21 C 1.37875 * 119.99983 * 180.02562 * 19 16 15 22 22 N 1.31520 * 119.99874 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00014 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47522 * 90.00225 * 23 21 19 25 25 H 1.48504 * 109.47230 * 209.99593 * 23 21 19 26 26 H 1.48495 * 109.47517 * 329.99388 * 23 21 19 27 27 C 1.53778 * 87.08449 * 25.43264 * 7 6 4 28 28 H 1.09000 * 113.61263 * 89.11673 * 27 7 6 29 29 O 1.42902 * 113.61375 * 220.02054 * 27 7 6 30 30 C 1.42902 * 113.99651 * 207.00373 * 29 27 7 31 31 H 1.08995 * 109.47124 * 60.00480 * 1 2 3 32 32 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47493 * 300.00361 * 1 2 3 34 34 H 1.08998 * 109.46946 * 240.00407 * 2 1 3 35 35 H 1.08995 * 109.47124 * 119.99520 * 2 1 3 36 36 H 1.08998 * 113.61103 * 334.57177 * 6 4 3 37 37 H 1.08997 * 113.61087 * 105.38486 * 6 4 3 38 38 H 0.96994 * 119.99991 * 284.50460 * 9 7 6 39 39 H 0.96994 * 120.00263 * 0.02562 * 14 12 10 40 40 H 1.08995 * 109.46905 * 300.00056 * 15 14 12 41 41 H 1.08992 * 109.47162 * 60.00318 * 15 14 12 42 42 H 1.08992 * 109.47460 * 60.00431 * 17 16 15 43 43 H 1.09005 * 109.46698 * 180.02562 * 17 16 15 44 44 H 1.08996 * 109.47648 * 299.99579 * 17 16 15 45 45 H 1.09000 * 109.47429 * 60.00369 * 18 16 15 46 46 H 1.09005 * 109.46607 * 179.97438 * 18 16 15 47 47 H 1.08992 * 109.47179 * 299.99499 * 18 16 15 48 48 H 0.97001 * 119.99793 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.46947 * 299.99203 * 30 29 27 50 50 H 1.08992 * 109.47476 * 59.99633 * 30 29 27 51 51 H 1.09003 * 109.46924 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9273 0.5640 -0.3728 6 6 4.0083 1.9777 1.3274 7 6 4.9917 2.8077 0.4856 8 1 5.9150 2.2801 0.2463 9 7 5.2250 4.1542 1.0138 10 6 6.3765 4.4365 1.6549 11 8 7.2201 3.5754 1.7943 12 6 6.6141 5.8099 2.1942 13 8 5.7703 6.6707 2.0552 14 7 7.7658 6.0922 2.8349 15 6 7.9991 7.4387 3.3630 16 6 9.3712 7.4911 4.0379 17 6 9.4146 6.4790 5.1844 18 6 10.4562 7.1496 3.0146 19 6 9.6109 8.8760 4.5817 20 1 8.8599 9.6423 4.4580 21 6 10.7894 9.1652 5.2363 22 7 11.7042 8.2323 5.3865 23 14 11.0868 10.8820 5.9097 24 1 10.5825 10.9610 7.3042 25 1 12.5425 11.1752 5.8926 26 1 10.3721 11.8747 5.0678 27 6 3.9455 2.7605 -0.6404 28 1 3.2271 3.5794 -0.6035 29 8 4.5108 2.5744 -1.9396 30 6 3.7194 3.1135 -3.0004 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.3070 2.5826 1.9022 37 1 4.4888 1.2036 1.9257 38 1 4.5508 4.8425 0.9020 39 1 8.4405 5.4042 2.9457 40 1 7.9685 8.1597 2.5461 41 1 7.2259 7.6822 4.0916 42 1 9.2411 5.4772 4.7915 43 1 10.3920 6.5167 5.6655 44 1 8.6417 6.7223 5.9134 45 1 10.4253 7.8708 2.1979 46 1 11.4338 7.1874 3.4954 47 1 10.2826 6.1479 2.6217 48 1 12.5331 8.4356 5.8474 49 1 2.7408 2.6334 -3.0037 50 1 3.5972 4.1865 -2.8534 51 1 4.2163 2.9311 -3.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118093821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:03 Heat of formation + Delta-G solvation = -143.501627 kcal Electronic energy + Delta-G solvation = -30242.636858 eV Core-core repulsion = 25950.307329 eV Total energy + Delta-G solvation = -4292.329529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.90372 -39.89795 -38.26331 -37.64643 -36.49920 -36.20074 -33.69634 -33.00036 -31.24467 -30.88937 -27.43252 -26.69285 -25.71948 -25.43723 -24.95007 -24.77705 -23.24332 -22.63809 -20.68337 -20.13127 -18.99639 -18.28171 -17.92772 -16.95938 -16.54934 -16.25826 -15.93894 -15.75061 -15.63448 -15.41641 -15.05446 -14.81258 -14.43505 -14.13901 -14.04425 -13.56191 -13.49034 -13.25276 -12.98677 -12.93248 -12.72727 -12.32476 -12.22067 -12.16460 -11.88184 -11.68684 -11.59343 -11.46490 -11.39840 -11.19491 -11.13594 -10.88043 -10.70455 -10.39738 -10.39077 -10.19873 -9.79881 -9.65100 -9.54598 -9.29800 -9.22256 -8.80168 -8.60671 -8.37000 -6.02437 -4.13188 1.62259 2.41279 3.14296 3.28179 3.35405 3.38880 3.42887 3.54653 3.89700 4.03849 4.06554 4.35888 4.39325 4.42001 4.63564 4.72404 4.78751 4.86985 4.93962 5.03414 5.06656 5.09677 5.23926 5.24168 5.33273 5.44918 5.49349 5.51500 5.63198 5.70827 6.10848 6.11822 6.23526 6.47128 6.62585 6.64203 6.82086 6.85546 6.86756 6.94126 7.00669 7.07015 7.33502 7.55331 7.65790 7.70529 7.95216 8.00391 8.12614 8.31877 8.40873 8.86935 9.52636 10.98944 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.001852 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.801043 B =15118.071596 C =15353.128487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.373 6.373 4 C 0.053 3.947 5 H 0.101 0.899 6 C -0.167 4.167 7 C 0.131 3.869 8 H 0.130 0.870 9 N -0.694 5.694 10 C 0.512 3.488 11 O -0.516 6.516 12 C 0.496 3.504 13 O -0.535 6.535 14 N -0.679 5.679 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.062 3.938 28 H 0.103 0.897 29 O -0.371 6.371 30 C 0.029 3.971 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.008 0.992 43 H 0.087 0.913 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.087 0.913 47 H 0.009 0.991 48 H 0.260 0.740 49 H 0.044 0.956 50 H 0.045 0.955 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 -16.482 -12.878 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.292 6.292 4 C -0.006 4.006 5 H 0.118 0.882 6 C -0.206 4.206 7 C 0.025 3.975 8 H 0.148 0.852 9 N -0.348 5.348 10 C 0.293 3.707 11 O -0.391 6.391 12 C 0.275 3.725 13 O -0.413 6.413 14 N -0.331 5.331 15 C 0.006 3.994 16 C 0.054 3.946 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.545 4.545 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C 0.003 3.997 28 H 0.121 0.879 29 O -0.289 6.289 30 C -0.067 4.067 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.250 0.750 39 H 0.248 0.752 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.027 0.973 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.106 0.894 47 H 0.027 0.973 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.315 -16.420 -12.813 27.735 hybrid contribution 0.043 0.818 0.341 0.888 sum -18.272 -15.602 -12.472 27.071 Atomic orbital electron populations 1.21754 0.93671 1.02338 1.03169 1.22542 0.95616 0.83663 1.00267 1.87925 1.19943 1.26739 1.94578 1.24051 0.81700 0.98725 0.96152 0.88153 1.23766 0.98796 1.00738 0.97293 1.22472 0.99002 0.83627 0.92361 0.85250 1.45596 1.19560 1.12969 1.56664 1.20529 0.82105 0.89276 0.78755 1.90755 1.43861 1.48461 1.56016 1.19922 0.83883 0.87850 0.80814 1.90724 1.44416 1.48116 1.58095 1.46229 1.17478 1.15969 1.53427 1.21952 1.00368 0.79587 0.97478 1.18395 0.87896 0.96174 0.92115 1.21852 1.03410 0.94745 0.99089 1.21851 1.03668 0.95713 0.97867 1.20941 1.02488 0.94941 1.36151 0.92356 1.24887 0.95888 0.97051 0.95709 1.69811 1.07700 1.32383 1.42340 0.86552 0.77275 0.84581 0.79334 1.20723 1.21266 1.19922 1.24491 0.94846 0.97449 0.82950 0.87938 1.87962 1.47327 1.79515 1.14137 1.22845 0.95628 0.97844 0.90419 0.91907 0.91049 0.91747 0.93244 0.93101 0.88157 0.89308 0.75010 0.75157 0.91979 0.91968 0.97263 0.89438 0.95354 0.95343 0.89434 0.97252 0.92944 0.93693 0.93631 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.36 6.51 37.16 0.24 0.60 16 3 O -0.37 -3.22 10.35 -35.23 -0.36 -3.59 16 4 C 0.05 0.43 4.12 -25.91 -0.11 0.32 16 5 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 6 C -0.17 -1.43 7.71 -25.92 -0.20 -1.63 16 7 C 0.13 1.34 4.03 -67.12 -0.27 1.07 16 8 H 0.13 1.48 7.54 -51.93 -0.39 1.09 16 9 N -0.69 -8.28 5.36 -53.44 -0.29 -8.56 16 10 C 0.51 7.85 7.89 -11.58 -0.09 7.76 16 11 O -0.52 -8.87 16.12 5.49 0.09 -8.78 16 12 C 0.50 8.70 7.89 -11.58 -0.09 8.61 16 13 O -0.54 -10.20 16.48 5.50 0.09 -10.11 16 14 N -0.68 -12.64 4.95 -60.73 -0.30 -12.94 16 15 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 16 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 19 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 21 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -23.55 9.35 55.43 0.52 -23.04 16 23 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.06 0.55 3.86 -25.92 -0.10 0.45 16 28 H 0.10 0.84 7.86 -51.93 -0.41 0.43 16 29 O -0.37 -3.67 10.71 -35.23 -0.38 -4.05 16 30 C 0.03 0.21 10.86 101.05 1.10 1.31 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.41 4.43 8.17 -40.82 -0.33 4.10 16 39 H 0.41 7.53 5.63 -40.82 -0.23 7.30 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 47 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 48 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 49 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -29.37 414.66 -6.98 -36.35 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.58 Total: 8.23 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 1.00 Total: 4.65 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.07 Total: -44.54 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.56 Total: -26.53 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.37 -6.98 -36.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118093821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.149 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds