Wall clock time and date at job start Wed Apr 1 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.47386 * 2 1 4 4 C 1.34224 * 117.00094 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00191 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47412 * 175.86609 * 6 4 3 8 8 N 1.46496 * 109.54303 * 305.87367 * 7 6 4 9 9 C 1.34782 * 119.99714 * 303.64213 * 8 7 6 10 10 O 1.21278 * 120.00054 * 354.56924 * 9 8 7 11 11 C 1.50703 * 119.99738 * 174.57466 * 9 8 7 12 12 H 1.09006 * 109.46870 * 319.99855 * 11 9 8 13 13 N 1.46900 * 109.47149 * 199.99776 * 11 9 8 14 14 C 1.53000 * 109.47104 * 79.99922 * 11 9 8 15 15 C 1.53002 * 109.46984 * 185.00085 * 14 11 9 16 16 C 1.50704 * 109.47149 * 179.97438 * 15 14 11 17 17 H 1.07995 * 119.99552 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99950 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47476 * 59.99712 * 20 18 16 22 22 H 1.48502 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46942 * 299.99396 * 20 18 16 24 24 C 1.53174 * 109.54296 * 185.68991 * 7 6 4 25 25 C 1.53113 * 109.15269 * 183.24268 * 24 7 6 26 26 O 1.42903 * 109.48471 * 57.47886 * 25 24 7 27 27 C 1.42900 * 114.09644 * 298.88519 * 26 25 24 28 28 C 1.53086 * 109.41817 * 61.16243 * 27 26 25 29 29 H 1.09006 * 109.46875 * 60.00055 * 1 2 3 30 30 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47066 * 300.00223 * 1 2 3 32 32 H 1.09003 * 109.47000 * 239.99783 * 2 1 3 33 33 H 1.09002 * 109.47068 * 120.00414 * 2 1 3 34 34 H 1.08998 * 109.47263 * 295.87045 * 6 4 3 35 35 H 1.08997 * 109.47111 * 55.86930 * 6 4 3 36 36 H 0.97005 * 120.00171 * 123.64622 * 8 7 6 37 37 H 1.00898 * 111.00111 * 176.04381 * 13 11 9 38 38 H 1.00900 * 110.99873 * 299.99959 * 13 11 9 39 39 H 1.09000 * 109.47300 * 304.99609 * 14 11 9 40 40 H 1.08996 * 109.47404 * 65.00267 * 14 11 9 41 41 H 1.09000 * 109.47238 * 299.99892 * 15 14 11 42 42 H 1.09001 * 109.47343 * 60.00020 * 15 14 11 43 43 H 0.97002 * 119.99864 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.52609 * 303.06173 * 24 7 6 45 45 H 1.09000 * 109.52177 * 63.25481 * 24 7 6 46 46 H 1.09000 * 109.40830 * 297.49542 * 25 24 7 47 47 H 1.08999 * 109.48735 * 177.51133 * 25 24 7 48 48 H 1.08996 * 109.47977 * 301.17395 * 27 26 25 49 49 H 1.09006 * 109.48648 * 181.15342 * 27 26 25 50 50 H 1.08998 * 109.52704 * 182.48476 * 28 27 26 51 51 H 1.09005 * 109.57705 * 62.32442 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 6 5.4453 2.8586 0.1057 8 7 5.8156 2.0563 1.2741 9 6 5.3640 2.3984 2.4970 10 8 4.7336 3.4238 2.6457 11 6 5.6425 1.5069 3.6797 12 1 5.5367 0.4638 3.3812 13 7 4.6881 1.8076 4.7551 14 6 7.0676 1.7525 4.1792 15 6 7.3936 0.7616 5.2985 16 6 8.7976 1.0031 5.7901 17 1 9.3972 1.7854 5.3486 18 6 9.3162 0.2261 6.8040 19 7 8.5854 -0.7256 7.3427 20 14 11.0562 0.5260 7.4138 21 1 11.1670 1.9130 7.9323 22 1 11.3723 -0.4350 8.5010 23 1 12.0126 0.3384 6.2933 24 6 6.0225 4.2702 0.2493 25 6 7.5513 4.1878 0.2717 26 8 8.0116 3.5481 -0.9204 27 6 7.5418 2.2083 -1.0823 28 6 6.0129 2.2112 -1.1613 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6457 3.4447 -0.9234 35 1 3.5266 3.4932 0.8518 36 1 6.3859 1.2789 1.1676 37 1 4.8122 1.1795 5.5349 38 1 4.7664 2.7695 5.0496 39 1 7.7696 1.6153 3.3567 40 1 7.1488 2.7705 4.5602 41 1 6.6917 0.8988 6.1210 42 1 7.3125 -0.2564 4.9175 43 1 8.9502 -1.2720 8.0563 44 1 5.7042 4.8816 -0.5949 45 1 5.6669 4.7163 1.1781 46 1 7.8703 3.6114 1.1400 47 1 7.9688 5.1930 0.3293 48 1 7.8607 1.6060 -0.2317 49 1 7.9524 1.7874 -2.0001 50 1 5.6503 1.1864 -1.2405 51 1 5.6934 2.7792 -2.0351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118543993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:51 Heat of formation + Delta-G solvation = -205.507684 kcal Electronic energy + Delta-G solvation = -32326.665132 eV Core-core repulsion = 28031.646818 eV Total energy + Delta-G solvation = -4295.018314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.33150 -40.99292 -39.80037 -37.87420 -37.15889 -36.23580 -34.85878 -33.19898 -32.60161 -32.13245 -31.70579 -30.32888 -28.21733 -25.96627 -25.14043 -24.70366 -23.75287 -22.65984 -21.95194 -21.34050 -20.34155 -18.98102 -18.73289 -18.20656 -17.72683 -17.57820 -17.15963 -16.92014 -16.57603 -16.46360 -16.10839 -16.01086 -15.65492 -15.54598 -15.20875 -14.85967 -14.73846 -14.41988 -14.14785 -13.89819 -13.86783 -13.59125 -13.48821 -13.44095 -13.22798 -13.03664 -12.92341 -12.80911 -12.67125 -12.54871 -12.50722 -12.31125 -11.92347 -11.83922 -11.73314 -11.52370 -11.50141 -11.33929 -11.18399 -10.66247 -10.57913 -10.50628 -10.03003 -9.65259 -8.23239 -6.34160 1.18978 1.38371 1.40020 1.48020 1.59667 1.67605 2.10612 2.38385 2.93968 3.10230 3.44372 3.46903 3.67494 3.73285 3.80546 3.96683 3.99065 4.01827 4.07732 4.09235 4.21506 4.26480 4.33372 4.36446 4.40252 4.49663 4.62109 4.68817 4.73305 4.78838 4.80421 4.86780 4.87233 4.90748 5.03020 5.04974 5.06340 5.12978 5.16196 5.43168 5.50914 5.52973 5.61790 5.77683 6.03891 6.18429 6.22775 6.45273 6.51549 6.74536 6.81010 7.21431 7.35123 8.87420 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003308 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.359886 B = 8463.479143 C =10126.890992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.464 3.536 5 O -0.519 6.519 6 C -0.125 4.125 7 C 0.191 3.809 8 N -0.707 5.707 9 C 0.532 3.468 10 O -0.553 6.553 11 C 0.079 3.921 12 H 0.092 0.908 13 N -0.827 5.827 14 C -0.117 4.117 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.056 0.944 18 C 0.005 3.995 19 N -0.927 5.927 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.157 4.157 25 C 0.064 3.936 26 O -0.392 6.392 27 C 0.057 3.943 28 C -0.156 4.156 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.406 0.594 37 H 0.350 0.650 38 H 0.346 0.654 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.002 0.998 42 H -0.004 1.004 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.105 0.895 48 H 0.044 0.956 49 H 0.115 0.885 50 H 0.094 0.906 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 5.954 -21.199 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.285 6.285 4 C 0.309 3.691 5 O -0.408 6.408 6 C -0.163 4.163 7 C 0.106 3.894 8 N -0.359 5.359 9 C 0.319 3.681 10 O -0.431 6.431 11 C -0.037 4.037 12 H 0.110 0.890 13 N -0.358 5.358 14 C -0.157 4.157 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.195 4.195 25 C -0.013 4.013 26 O -0.311 6.311 27 C -0.020 4.020 28 C -0.193 4.193 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.130 0.870 36 H 0.242 0.758 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.054 0.946 47 H 0.123 0.877 48 H 0.063 0.937 49 H 0.133 0.867 50 H 0.112 0.888 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.485 6.127 -21.645 25.727 hybrid contribution 1.799 -0.778 1.687 2.586 sum -10.686 5.349 -19.958 23.262 Atomic orbital electron populations 1.21816 0.90642 1.04279 1.03600 1.23214 0.96996 0.79327 1.02234 1.86505 1.24546 1.33602 1.83816 1.23883 0.80602 0.93072 0.71589 1.90596 1.60402 1.43793 1.45999 1.21956 0.95166 0.91223 1.07961 1.20227 0.91629 0.91744 0.85845 1.46031 1.52448 1.31677 1.05765 1.20468 0.77753 0.85652 0.84247 1.90550 1.41269 1.25880 1.85423 1.21380 0.91728 0.99025 0.91537 0.89008 1.58749 1.53375 1.09715 1.14008 1.22094 0.94642 0.99685 0.99281 1.18947 0.95324 0.93471 0.92850 1.21582 1.00399 1.17343 1.19029 0.92608 1.25882 1.01995 0.94791 0.96659 1.70064 1.38697 1.21375 1.26569 0.85587 0.79746 0.78165 0.78092 1.19453 1.20795 1.19254 1.22538 0.96346 0.95703 1.04951 1.22541 0.93439 0.98497 0.86843 1.87911 1.72685 1.27932 1.42587 1.22693 0.93155 0.83417 1.02706 1.22601 0.96727 1.03708 0.96279 0.90731 0.88320 0.91957 0.90663 0.92540 0.83879 0.87032 0.75777 0.83512 0.84098 0.92085 0.93235 0.97951 0.98583 0.92717 0.88003 0.90025 0.94603 0.87689 0.93743 0.86727 0.88770 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.29 71.98 0.74 -1.18 16 2 C 0.06 1.06 6.19 71.98 0.45 1.50 16 3 O -0.37 -8.45 10.22 -51.35 -0.52 -8.98 16 4 C 0.46 11.05 7.45 71.23 0.53 11.58 16 5 O -0.52 -13.90 12.78 21.96 0.28 -13.62 16 6 C -0.13 -2.49 4.51 29.85 0.13 -2.35 16 7 C 0.19 3.91 0.25 3.73 0.00 3.91 16 8 N -0.71 -17.97 2.78 -422.37 -1.17 -19.14 16 9 C 0.53 16.65 6.42 87.66 0.56 17.21 16 10 O -0.55 -18.83 12.56 -3.02 -0.04 -18.87 16 11 C 0.08 2.73 3.21 44.17 0.14 2.87 16 12 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 13 N -0.83 -28.86 8.94 -171.79 -1.54 -30.40 16 14 C -0.12 -4.63 4.78 30.60 0.15 -4.49 16 15 C 0.03 1.56 4.74 29.85 0.14 1.70 16 16 C -0.55 -30.27 9.11 25.60 0.23 -30.04 16 17 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 20 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.16 -3.14 4.82 30.69 0.15 -2.99 16 25 C 0.06 1.38 6.68 72.02 0.48 1.86 16 26 O -0.39 -8.64 10.77 -148.98 -1.60 -10.24 16 27 C 0.06 1.04 6.67 72.01 0.48 1.52 16 28 C -0.16 -2.62 4.69 30.69 0.14 -2.47 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.70 6.30 -2.39 -0.02 2.68 16 36 H 0.41 10.17 7.42 -92.70 -0.69 9.48 16 37 H 0.35 12.61 7.55 -89.70 -0.68 11.93 16 38 H 0.35 11.99 8.58 -89.69 -0.77 11.22 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.99 6.21 -2.39 -0.01 1.98 16 46 H 0.04 0.91 7.75 -2.39 -0.02 0.89 16 47 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.04 0.89 7.03 -2.39 -0.02 0.88 16 49 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 50 H 0.09 1.76 5.99 -2.39 -0.01 1.74 16 51 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -67.72 401.17 1.33 -66.38 By element: Atomic # 1 Polarization: 45.65 SS G_CDS: -1.18 Total: 44.48 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 4.79 Total: -0.60 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -2.42 Total: -104.28 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -1.89 Total: -51.71 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.72 1.33 -66.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118543993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.127 kcal (2) G-P(sol) polarization free energy of solvation -67.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds