Wall clock time and date at job start Wed Apr 1 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46795 * 2 1 4 4 C 1.36931 * 120.00074 * 276.20453 * 3 2 1 5 5 H 1.07998 * 119.99836 * 129.59037 * 4 3 2 6 6 C 1.38808 * 120.00042 * 309.59040 * 4 3 2 7 7 N 1.31621 * 120.00159 * 6.10832 * 6 4 3 8 8 Si 1.86802 * 120.00195 * 186.11229 * 6 4 3 9 9 H 1.48504 * 109.47007 * 58.65950 * 8 6 4 10 10 H 1.48495 * 109.47133 * 178.65474 * 8 6 4 11 11 H 1.48499 * 109.46871 * 298.65859 * 8 6 4 12 12 C 1.46501 * 119.99732 * 96.20175 * 3 2 1 13 13 H 1.09000 * 109.47052 * 187.59107 * 12 3 2 14 14 C 1.52996 * 109.47092 * 67.59234 * 12 3 2 15 15 C 1.53006 * 109.47148 * 307.59198 * 12 3 2 16 16 N 1.46496 * 109.47197 * 296.13893 * 15 12 3 17 17 C 1.34777 * 120.00194 * 171.98449 * 16 15 12 18 18 O 1.21694 * 119.99701 * 3.78685 * 17 16 15 19 19 C 1.46698 * 120.00299 * 183.77712 * 17 16 15 20 20 C 1.36709 * 126.85451 * 165.33957 * 19 17 16 21 21 N 1.33324 * 107.83754 * 180.02562 * 20 19 17 22 22 C 1.30866 * 109.74081 * 359.97438 * 21 20 19 23 23 N 1.34745 * 109.13695 * 359.72696 * 22 21 20 24 24 C 1.40108 * 126.50361 * 180.27384 * 23 22 21 25 25 C 1.38854 * 120.06359 * 121.33992 * 24 23 22 26 26 C 1.38118 * 119.92787 * 179.74682 * 25 24 23 27 27 C 1.38281 * 120.07032 * 0.52500 * 26 25 24 28 28 C 1.38281 * 120.13518 * 359.74696 * 27 26 25 29 29 C 1.38126 * 120.06710 * 359.97438 * 28 27 26 30 30 H 1.08994 * 109.47222 * 299.99264 * 1 2 3 31 31 H 1.08995 * 109.47523 * 60.00000 * 1 2 3 32 32 H 1.09010 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46856 * 240.00211 * 2 1 3 34 34 H 1.08994 * 109.47060 * 120.00255 * 2 1 3 35 35 H 0.96996 * 120.00297 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.47338 * 60.00370 * 14 12 3 37 37 H 1.09005 * 109.47208 * 179.97438 * 14 12 3 38 38 H 1.09000 * 109.47068 * 299.99863 * 14 12 3 39 39 H 1.08994 * 109.47237 * 56.14536 * 15 12 3 40 40 H 1.09003 * 109.46970 * 176.14042 * 15 12 3 41 41 H 0.96998 * 120.00145 * 351.99774 * 16 15 12 42 42 H 1.08001 * 126.07913 * 0.03441 * 20 19 17 43 43 H 1.07995 * 125.43504 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.03694 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.96513 * 180.29005 * 26 25 24 46 46 H 1.07996 * 119.93866 * 179.72376 * 27 26 25 47 47 H 1.08002 * 119.97167 * 179.97438 * 28 27 26 48 48 H 1.07999 * 120.03335 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1256 2.0695 -1.1789 5 1 1.6948 3.0557 -1.2696 6 6 2.7882 1.4997 -2.2574 7 7 3.2079 0.2541 -2.1885 8 14 3.0843 2.5007 -3.8065 9 1 3.8731 3.7129 -3.4693 10 1 3.8349 1.6798 -4.7904 11 1 1.7806 2.9051 -4.3912 12 6 2.3916 2.0262 1.2613 13 1 2.5991 3.0812 1.0825 14 6 3.6408 1.3499 1.8297 15 6 1.2410 1.8950 2.2613 16 7 0.0721 2.6211 1.7588 17 6 -1.1122 2.5130 2.3929 18 8 -1.1950 1.8679 3.4215 19 6 -2.3015 3.1730 1.8433 20 6 -3.6028 2.9417 2.1927 21 7 -4.3719 3.7468 1.4593 22 6 -3.6238 4.4723 0.6677 23 7 -2.3296 4.1581 0.8725 24 6 -1.2227 4.7195 0.2225 25 6 -0.2313 5.3539 0.9593 26 6 0.8613 5.9018 0.3161 27 6 0.9632 5.8287 -1.0610 28 6 -0.0252 5.2026 -1.7980 29 6 -1.1175 4.6476 -1.1601 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.6705 -0.1442 -2.9422 36 1 4.4605 1.4434 1.1173 37 1 3.9189 1.8300 2.7679 38 1 3.4333 0.2949 2.0085 39 1 0.9881 0.8424 2.3882 40 1 1.5441 2.3139 3.2209 41 1 0.1505 3.1796 0.9696 42 1 -3.9466 2.2330 2.9316 43 1 -3.9857 5.2086 -0.0346 44 1 -0.3123 5.4148 2.0345 45 1 1.6350 6.3912 0.8890 46 1 1.8162 6.2618 -1.5620 47 1 0.0568 5.1473 -2.8734 48 1 -1.8889 4.1584 -1.7362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153828532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:17 Heat of formation + Delta-G solvation = 80.730922 kcal Electronic energy + Delta-G solvation = -32092.741371 eV Core-core repulsion = 28149.736966 eV Total energy + Delta-G solvation = -3943.004405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.48323 -39.28522 -38.98845 -36.81916 -34.48533 -33.68181 -32.02419 -31.18657 -30.77403 -30.03924 -29.31767 -28.20485 -25.89797 -23.99031 -23.65738 -22.96934 -22.27652 -21.65984 -21.11905 -19.95662 -19.22192 -18.36923 -16.94317 -16.55769 -16.08433 -16.01881 -15.68787 -15.30497 -14.83617 -14.69585 -14.38563 -14.05689 -13.92843 -13.83635 -13.62791 -13.49860 -13.23418 -12.76636 -12.58872 -12.35653 -12.14605 -11.91914 -11.75824 -11.46731 -11.42495 -11.09557 -11.01408 -10.81594 -10.71756 -10.50982 -10.43127 -10.16872 -10.08128 -9.74856 -9.65905 -9.48508 -9.13780 -8.91008 -8.68018 -8.55881 -8.42256 -6.46782 -5.76204 -3.61674 0.81366 1.19831 1.50369 2.49910 2.87404 3.22267 3.27503 3.31735 3.40933 3.54746 3.65941 4.34227 4.51821 4.65660 4.71465 4.73217 5.01419 5.23527 5.24124 5.25300 5.28663 5.40476 5.50058 5.56914 5.61461 5.79745 5.83946 5.97759 6.06891 6.18263 6.21789 6.26198 6.31182 6.37501 6.38283 6.45107 6.50251 6.65769 6.70025 6.77456 6.81382 6.89325 7.01753 7.08575 7.14541 7.34309 7.66846 7.77923 7.94984 7.96735 8.48857 8.58015 9.20921 9.72098 10.39574 11.13706 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.005555 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.830903 B = 5039.129110 C = 6199.513001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.576 5.576 4 C -0.261 4.261 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.158 3.842 13 H 0.063 0.937 14 C -0.154 4.154 15 C 0.104 3.896 16 N -0.701 5.701 17 C 0.586 3.414 18 O -0.541 6.541 19 C -0.074 4.074 20 C 0.059 3.941 21 N -0.495 5.495 22 C 0.213 3.787 23 N -0.395 5.395 24 C 0.089 3.911 25 C -0.110 4.110 26 C -0.101 4.101 27 C -0.092 4.092 28 C -0.092 4.092 29 C -0.095 4.095 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.103 0.897 34 H 0.018 0.982 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.405 0.595 42 H 0.184 0.816 43 H 0.211 0.789 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 11.182 2.862 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.297 5.297 4 C -0.391 4.391 5 H 0.072 0.928 6 C -0.172 4.172 7 N -0.526 5.526 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.050 3.950 13 H 0.081 0.919 14 C -0.214 4.214 15 C -0.021 4.021 16 N -0.353 5.353 17 C 0.371 3.629 18 O -0.419 6.419 19 C -0.188 4.188 20 C -0.093 4.093 21 N -0.213 5.213 22 C -0.068 4.068 23 N -0.075 5.075 24 C -0.001 4.001 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.110 4.110 28 C -0.110 4.110 29 C -0.114 4.114 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.120 0.880 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.244 0.756 42 H 0.201 0.799 43 H 0.227 0.773 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.051 10.652 3.435 12.723 hybrid contribution 1.064 0.511 -1.423 1.849 sum -4.987 11.162 2.011 12.390 Atomic orbital electron populations 1.22397 1.01179 0.98325 1.00356 1.21081 0.89627 0.86975 1.01317 1.43669 1.74089 1.11188 1.00787 1.18830 1.29986 1.00600 0.89675 0.92797 1.25644 0.96439 0.95998 0.99154 1.69681 1.40039 1.11789 1.31071 0.86650 0.78168 0.80267 0.83323 1.20566 1.21627 1.20821 1.20712 0.90200 0.96936 0.87142 0.91865 1.22163 0.99475 1.00575 0.99142 1.22093 0.86008 0.96908 0.97047 1.46184 1.09010 1.48828 1.31321 1.16830 0.81701 0.80565 0.83779 1.90809 1.85021 1.42716 1.23351 1.21515 0.97871 0.99641 0.99765 1.22568 0.87262 0.99532 0.99982 1.70225 1.33047 1.09061 1.08959 1.25207 0.78293 1.01756 1.01582 1.42928 1.06666 1.28632 1.29313 1.17681 0.89091 1.01414 0.91908 1.21115 0.94126 0.97519 1.00222 1.21046 0.97020 0.99131 0.94727 1.21355 0.98290 0.97348 0.94039 1.21097 0.92901 0.96263 1.00770 1.21099 0.99427 0.98930 0.91965 0.94411 0.93876 0.95410 0.87984 0.96348 0.93355 0.92064 0.94468 0.93268 0.91204 0.92755 0.75640 0.79915 0.77275 0.85455 0.84852 0.85045 0.84821 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.96 37.16 0.37 -3.13 16 2 C 0.14 3.10 5.21 -4.04 -0.02 3.08 16 3 N -0.58 -12.78 2.22 -165.66 -0.37 -13.15 16 4 C -0.26 -6.23 9.27 -15.06 -0.14 -6.37 16 5 H 0.05 1.25 7.29 -52.49 -0.38 0.87 16 6 C 0.03 0.73 5.42 -17.43 -0.09 0.63 16 7 N -0.88 -23.68 10.95 55.49 0.61 -23.07 16 8 Si 0.89 19.45 29.56 -169.99 -5.02 14.42 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.16 3.02 2.72 -67.93 -0.18 2.83 16 13 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 14 C -0.15 -2.77 9.29 37.16 0.35 -2.43 16 15 C 0.10 1.88 4.35 -4.04 -0.02 1.86 16 16 N -0.70 -12.31 3.82 -61.61 -0.24 -12.55 16 17 C 0.59 10.70 6.88 -12.84 -0.09 10.62 16 18 O -0.54 -11.14 16.93 5.19 0.09 -11.06 16 19 C -0.07 -1.21 6.78 -82.07 -0.56 -1.77 16 20 C 0.06 0.92 11.69 -17.46 -0.20 0.71 16 21 N -0.50 -7.33 11.20 -14.36 -0.16 -7.49 16 22 C 0.21 2.68 12.34 -90.34 -1.11 1.57 16 23 N -0.39 -5.53 2.84 -58.64 -0.17 -5.69 16 24 C 0.09 1.17 4.20 -83.62 -0.35 0.82 16 25 C -0.11 -1.36 7.60 -39.40 -0.30 -1.66 16 26 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 16 27 C -0.09 -1.06 9.93 -39.55 -0.39 -1.45 16 28 C -0.09 -1.11 9.61 -39.61 -0.38 -1.49 16 29 C -0.09 -1.19 9.82 -39.40 -0.39 -1.58 16 30 H 0.04 0.79 4.56 -51.93 -0.24 0.56 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.10 2.67 5.41 -51.93 -0.28 2.39 16 34 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.91 7.05 -51.93 -0.37 0.54 16 39 H 0.07 1.38 6.29 -51.93 -0.33 1.06 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.40 7.02 4.56 -40.82 -0.19 6.83 16 42 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 43 H 0.21 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -29.32 388.91 -10.05 -39.37 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.74 Total: 12.63 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -3.91 Total: 0.73 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.32 Total: -61.95 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.32 -10.05 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153828532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.103 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds