Wall clock time and date at job start Wed Apr 1 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46702 * 2 1 4 4 C 1.36939 * 119.99527 * 275.72661 * 3 2 1 5 5 H 1.08000 * 120.00026 * 33.28004 * 4 3 2 6 6 C 1.38812 * 119.99997 * 213.27545 * 4 3 2 7 7 N 1.31622 * 119.99994 * 17.26066 * 6 4 3 8 8 Si 1.86799 * 120.00053 * 197.27011 * 6 4 3 9 9 H 1.48494 * 109.47455 * 59.99675 * 8 6 4 10 10 H 1.48501 * 109.46977 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46881 * 299.99552 * 8 6 4 12 12 C 1.46496 * 119.99986 * 95.73456 * 3 2 1 13 13 H 1.09008 * 109.46698 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.47443 * 60.08246 * 12 3 2 15 15 C 1.53000 * 109.47118 * 300.07774 * 12 3 2 16 16 N 1.46502 * 109.47299 * 305.00712 * 15 12 3 17 17 C 1.34774 * 119.99601 * 179.97438 * 16 15 12 18 18 O 1.21578 * 120.00653 * 359.97438 * 17 16 15 19 19 C 1.47673 * 119.99505 * 179.97438 * 17 16 15 20 20 C 1.41528 * 126.44063 * 179.70964 * 19 17 16 21 21 C 1.35353 * 105.55897 * 179.88376 * 20 19 17 22 22 N 1.35864 * 107.12172 * 0.38224 * 21 20 19 23 23 C 1.40112 * 124.96024 * 179.71926 * 22 21 20 24 24 C 1.38861 * 120.06856 * 359.73359 * 23 22 21 25 25 C 1.38112 * 119.93182 * 179.72503 * 24 23 22 26 26 C 1.38291 * 120.06760 * 0.55608 * 25 24 23 27 27 C 1.38284 * 120.13306 * 359.72117 * 26 25 24 28 28 C 1.38110 * 120.07085 * 0.02562 * 27 26 25 29 29 N 1.28471 * 110.07988 * 359.74756 * 22 21 20 30 30 H 1.09005 * 109.46906 * 60.00443 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47370 * 300.00489 * 1 2 3 33 33 H 1.08998 * 109.47608 * 239.99982 * 2 1 3 34 34 H 1.09001 * 109.47162 * 119.99120 * 2 1 3 35 35 H 0.97000 * 120.00144 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46695 * 299.99958 * 14 12 3 37 37 H 1.08994 * 109.46792 * 59.99677 * 14 12 3 38 38 H 1.08994 * 109.46782 * 179.97438 * 14 12 3 39 39 H 1.09007 * 109.46743 * 65.00464 * 15 12 3 40 40 H 1.08998 * 109.47390 * 185.00198 * 15 12 3 41 41 H 0.96993 * 119.99545 * 359.97438 * 16 15 12 42 42 H 1.07998 * 127.22477 * 0.02867 * 20 19 17 43 43 H 1.08004 * 126.44146 * 180.10184 * 21 20 19 44 44 H 1.08006 * 120.03359 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.96736 * 180.30105 * 25 24 23 46 46 H 1.07996 * 119.93323 * 179.74236 * 26 25 24 47 47 H 1.07998 * 119.96208 * 180.02562 * 27 26 25 48 48 H 1.08001 * 120.03334 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 -1.1801 5 1 1.4369 1.8810 -1.9831 6 6 3.1501 2.9986 -1.3440 7 7 4.1870 2.9919 -0.5334 8 14 3.0445 4.2630 -2.7150 9 1 1.8243 5.0895 -2.5334 10 1 4.2443 5.1372 -2.6756 11 1 2.9809 3.5677 -4.0257 12 6 2.3819 2.0297 1.2623 13 1 2.7199 3.0469 1.0641 14 6 3.5077 1.2414 1.9349 15 6 1.1629 2.0670 2.1862 16 7 0.0465 2.7174 1.4957 17 6 -1.1390 2.8631 2.1200 18 8 -1.2822 2.4543 3.2560 19 6 -2.2642 3.5192 1.4241 20 6 -3.5620 3.7377 1.9446 21 6 -4.2462 4.3677 0.9612 22 7 -3.3978 4.5064 -0.0908 23 6 -3.7264 5.1065 -1.3135 24 6 -5.0039 5.6097 -1.5205 25 6 -5.3231 6.2058 -2.7248 26 6 -4.3753 6.2915 -3.7282 27 6 -3.1039 5.7861 -3.5271 28 6 -2.7771 5.1936 -2.3232 29 7 -2.2504 4.0064 0.1990 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 4.8962 3.6437 -0.6477 36 1 3.1706 0.2240 2.1329 37 1 4.3760 1.2149 1.2767 38 1 3.7784 1.7242 2.8738 39 1 0.8800 1.0493 2.4557 40 1 1.4079 2.6271 3.0886 41 1 0.1606 3.0432 0.5892 42 1 -3.9288 3.4619 2.9222 43 1 -5.2749 4.6942 1.0031 44 1 -5.7461 5.5386 -0.7390 45 1 -6.3151 6.6017 -2.8846 46 1 -4.6285 6.7543 -4.6705 47 1 -2.3657 5.8549 -4.3125 48 1 -1.7838 4.7995 -2.1666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154155156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:08 Heat of formation + Delta-G solvation = 99.342185 kcal Electronic energy + Delta-G solvation = -30334.789153 eV Core-core repulsion = 26392.591793 eV Total energy + Delta-G solvation = -3942.197360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.87404 -39.41235 -38.82210 -36.81397 -33.75210 -33.57048 -31.83723 -31.70595 -31.08097 -30.45566 -29.42478 -28.11161 -25.94964 -23.98226 -23.83802 -23.42909 -21.85058 -21.49365 -20.92762 -19.53585 -19.18331 -18.61561 -17.12578 -16.64814 -16.43575 -16.14301 -15.40084 -15.16342 -14.87842 -14.68439 -14.55537 -13.94042 -13.91228 -13.72087 -13.62585 -13.30485 -13.00025 -12.82006 -12.63925 -12.27375 -12.05444 -11.95097 -11.77561 -11.48769 -11.46319 -11.01483 -10.92841 -10.81889 -10.75458 -10.63616 -10.28873 -10.23738 -10.04024 -9.64324 -9.58727 -9.39366 -9.34955 -9.28779 -8.49167 -8.44671 -8.24648 -6.62153 -5.83723 -3.31619 0.56132 1.01156 1.94976 2.20576 2.29951 3.34552 3.41047 3.41675 3.47688 3.75501 3.80392 4.24270 4.45792 4.47089 4.65128 4.69846 4.84964 5.02906 5.20482 5.22275 5.31251 5.43374 5.47221 5.59670 5.67466 5.73618 5.95108 5.97239 6.03219 6.11568 6.17684 6.23203 6.31105 6.40832 6.43437 6.44150 6.53795 6.59837 6.66986 6.73736 6.87824 6.89029 6.97047 7.10463 7.22896 7.52676 7.61644 7.81585 7.83737 8.26919 8.48008 8.75752 9.20753 9.82259 10.39334 11.23056 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.004198 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.271815 B = 6667.795542 C = 8750.727511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.100 3.900 16 N -0.684 5.684 17 C 0.592 3.408 18 O -0.551 6.551 19 C 0.004 3.996 20 C -0.171 4.171 21 C -0.024 4.024 22 N -0.238 5.238 23 C 0.140 3.860 24 C -0.131 4.131 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.107 4.107 29 N -0.248 5.248 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.254 0.746 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.418 0.582 42 H 0.167 0.833 43 H 0.183 0.817 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.135 0.865 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 5.691 -1.960 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.375 3.625 18 O -0.429 6.429 19 C -0.158 4.158 20 C -0.198 4.198 21 C -0.163 4.163 22 N -0.020 5.020 23 C 0.049 3.951 24 C -0.152 4.152 25 C -0.118 4.118 26 C -0.142 4.142 27 C -0.115 4.115 28 C -0.126 4.126 29 N -0.081 5.081 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.256 0.744 42 H 0.184 0.816 43 H 0.200 0.800 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.667 5.650 -2.138 17.729 hybrid contribution -0.549 0.724 -0.456 1.017 sum -17.217 6.375 -2.594 18.541 Atomic orbital electron populations 1.22445 1.00025 0.98863 1.01600 1.20750 0.91631 0.87402 0.98690 1.43869 1.75938 1.08285 1.02271 1.19022 1.08350 1.18159 0.93291 0.92017 1.25118 0.94553 1.01293 0.97820 1.69992 1.07859 1.35986 1.39612 0.86498 0.77023 0.81770 0.82257 1.20851 1.21754 1.20936 1.20501 0.88836 0.99602 0.84185 0.88208 1.22018 1.01093 0.97951 0.99245 1.22255 0.88010 0.96369 0.95906 1.45886 1.10293 1.57821 1.19375 1.16876 0.81486 0.79028 0.85099 1.90746 1.83044 1.51324 1.17760 1.22304 0.96664 1.05144 0.91712 1.21821 0.92737 1.04058 1.01177 1.22963 0.98690 1.06559 0.88099 1.42779 1.07775 1.40717 1.10768 1.17696 0.95074 0.98694 0.83627 1.20826 0.94159 1.00933 0.99250 1.20965 0.99883 0.98604 0.92396 1.21303 0.93478 0.99944 0.99471 1.21172 0.96915 0.96742 0.96678 1.21165 1.00140 0.99257 0.92066 1.73698 1.05051 1.12675 1.16646 0.93514 0.94941 0.93021 0.94141 0.94477 0.93573 0.95119 0.90265 0.94807 0.92562 0.92672 0.74437 0.81590 0.80017 0.85010 0.84940 0.85314 0.84703 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.87 37.16 0.37 -2.90 16 2 C 0.14 2.96 5.67 -4.04 -0.02 2.93 16 3 N -0.58 -13.47 1.85 -165.65 -0.31 -13.77 16 4 C -0.26 -6.58 9.26 -15.06 -0.14 -6.72 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.97 10.60 55.49 0.59 -23.38 16 8 Si 0.89 20.67 29.59 -169.99 -5.03 15.64 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.18 3.88 1.92 -67.93 -0.13 3.75 16 13 H 0.10 2.50 6.03 -51.92 -0.31 2.18 16 14 C -0.14 -2.99 9.05 37.16 0.34 -2.65 16 15 C 0.10 2.01 4.34 -4.04 -0.02 1.99 16 16 N -0.68 -13.69 3.98 -61.30 -0.24 -13.94 16 17 C 0.59 11.67 7.59 -12.41 -0.09 11.58 16 18 O -0.55 -11.86 16.92 5.30 0.09 -11.77 16 19 C 0.00 0.07 7.13 -82.75 -0.59 -0.52 16 20 C -0.17 -2.42 10.80 -39.36 -0.42 -2.84 16 21 C -0.02 -0.29 10.78 -16.80 -0.18 -0.47 16 22 N -0.24 -3.41 3.52 -10.55 -0.04 -3.45 16 23 C 0.14 1.74 6.66 -83.61 -0.56 1.19 16 24 C -0.13 -1.20 9.43 -39.40 -0.37 -1.57 16 25 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.12 -1.00 10.04 -39.55 -0.40 -1.40 16 27 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 28 C -0.11 -1.37 9.59 -39.40 -0.38 -1.75 16 29 N -0.25 -4.29 10.85 33.42 0.36 -3.92 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 1.03 4.99 -51.93 -0.26 0.77 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.04 0.74 6.45 -51.93 -0.33 0.41 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 37 H 0.08 1.86 7.39 -51.93 -0.38 1.48 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.14 7.05 -51.92 -0.37 0.77 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.42 8.86 7.62 -40.82 -0.31 8.54 16 42 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.18 1.33 6.96 -52.48 -0.37 0.96 16 44 H 0.13 0.87 6.65 -52.48 -0.35 0.52 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 48 H 0.15 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -30.02 392.23 -8.93 -38.95 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.78 Total: 11.40 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -3.48 Total: -1.68 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.36 Total: -58.46 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.02 -8.93 -38.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154155156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.294 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds