Wall clock time and date at job start Wed Apr 1 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46802 * 2 1 4 4 C 1.36940 * 120.00235 * 275.91616 * 3 2 1 5 5 H 1.07997 * 119.99801 * 34.08605 * 4 3 2 6 6 C 1.38812 * 119.99879 * 214.08887 * 4 3 2 7 7 N 1.31615 * 120.00088 * 17.01474 * 6 4 3 8 8 Si 1.86795 * 119.99916 * 197.01047 * 6 4 3 9 9 H 1.48499 * 109.47367 * 90.00103 * 8 6 4 10 10 H 1.48493 * 109.47361 * 210.00302 * 8 6 4 11 11 H 1.48508 * 109.47335 * 330.00215 * 8 6 4 12 12 C 1.46495 * 119.99748 * 95.91415 * 3 2 1 13 13 H 1.09003 * 109.47115 * 177.15691 * 12 3 2 14 14 C 1.52995 * 109.47408 * 57.15860 * 12 3 2 15 15 C 1.53002 * 109.47333 * 297.15459 * 12 3 2 16 16 N 1.46498 * 109.47360 * 305.00430 * 15 12 3 17 17 C 1.34769 * 119.99991 * 180.02562 * 16 15 12 18 18 O 1.21577 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.47662 * 119.99750 * 179.97438 * 17 16 15 20 20 C 1.39713 * 120.08073 * 359.71716 * 19 17 16 21 21 C 1.37721 * 119.91485 * 179.76735 * 20 19 17 22 22 C 1.39043 * 120.08533 * 0.51337 * 21 20 19 23 23 N 1.39865 * 119.92012 * 179.71832 * 22 21 20 24 24 C 1.37152 * 126.48295 * 359.73708 * 23 22 21 25 25 C 1.34624 * 106.82857 * 179.87614 * 24 23 22 26 26 N 1.34157 * 108.21423 * 0.38831 * 25 24 23 27 27 C 1.30489 * 109.36621 * 359.75392 * 26 25 24 28 28 C 1.39038 * 120.15397 * 359.74143 * 22 21 20 29 29 C 1.37721 * 120.08598 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47191 * 299.99647 * 1 2 3 32 32 H 1.08997 * 109.47471 * 60.00132 * 1 2 3 33 33 H 1.08999 * 109.46798 * 240.00609 * 2 1 3 34 34 H 1.08997 * 109.47471 * 119.99868 * 2 1 3 35 35 H 0.97002 * 120.00294 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46845 * 299.99997 * 14 12 3 37 37 H 1.09001 * 109.47039 * 59.99861 * 14 12 3 38 38 H 1.09001 * 109.47762 * 180.02562 * 14 12 3 39 39 H 1.09005 * 109.46826 * 65.00142 * 15 12 3 40 40 H 1.09001 * 109.47195 * 185.00267 * 15 12 3 41 41 H 0.97006 * 119.99965 * 359.97438 * 16 15 12 42 42 H 1.07990 * 120.03716 * 0.02745 * 20 19 17 43 43 H 1.08008 * 119.95568 * 180.27596 * 21 20 19 44 44 H 1.08005 * 126.59087 * 0.02562 * 24 23 22 45 45 H 1.08005 * 125.89783 * 180.10487 * 25 24 23 46 46 H 1.07999 * 125.72569 * 180.02562 * 27 26 25 47 47 H 1.08003 * 119.95786 * 180.02562 * 28 22 21 48 48 H 1.08000 * 120.04036 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1312 2.0676 -1.1796 5 1 1.4230 1.8928 -1.9759 6 6 3.1561 2.9879 -1.3517 7 7 4.1987 2.9696 -0.5487 8 14 3.0555 4.2522 -2.7231 9 1 2.3777 5.4743 -2.2210 10 1 4.4257 4.5980 -3.1790 11 1 2.2830 3.6893 -3.8597 12 6 2.3856 2.0283 1.2620 13 1 2.7709 3.0276 1.0593 14 6 3.4623 1.1996 1.9655 15 6 1.1518 2.1301 2.1610 16 7 0.0787 2.8206 1.4413 17 6 -1.1107 3.0266 2.0406 18 8 -1.2933 2.6390 3.1783 19 6 -2.1920 3.7230 1.3153 20 6 -1.9820 4.1743 0.0098 21 6 -2.9945 4.8192 -0.6652 22 6 -4.2210 5.0308 -0.0454 23 7 -5.2449 5.6914 -0.7321 24 6 -5.1825 6.1870 -2.0094 25 6 -6.3823 6.7380 -2.2727 26 7 -7.1573 6.5937 -1.1872 27 6 -6.4880 5.9687 -0.2576 28 6 -4.4318 4.5877 1.2555 29 6 -3.4259 3.9369 1.9347 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.9147 3.6129 -0.6687 36 1 3.0769 0.2003 2.1682 37 1 4.3413 1.1271 1.3250 38 1 3.7353 1.6807 2.9047 39 1 0.8192 1.1292 2.4362 40 1 1.4038 2.6898 3.0618 41 1 0.2246 3.1302 0.5336 42 1 -1.0283 4.0139 -0.4707 43 1 -2.8343 5.1644 -1.6760 44 1 -4.3346 6.1417 -2.6768 45 1 -6.6697 7.2178 -3.1966 46 1 -6.8596 5.7140 0.7239 47 1 -5.3859 4.7534 1.7338 48 1 -3.5903 3.5934 2.9453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154492845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:40 Heat of formation + Delta-G solvation = 79.075905 kcal Electronic energy + Delta-G solvation = -29919.598532 eV Core-core repulsion = 25976.522359 eV Total energy + Delta-G solvation = -3943.076172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.59594 -40.07433 -38.47499 -36.94081 -34.34374 -33.82247 -32.00914 -31.69188 -31.09841 -30.01523 -29.46501 -28.24629 -25.85352 -24.12082 -23.98836 -23.37824 -21.81488 -21.51606 -20.80594 -20.03468 -19.39479 -18.92711 -17.63055 -16.85950 -15.97502 -15.78081 -15.43266 -15.08412 -15.03206 -14.88295 -14.38027 -14.21338 -14.19622 -13.95386 -13.73894 -13.60551 -13.26543 -13.01452 -12.75480 -12.60030 -12.42571 -12.17186 -11.91162 -11.61391 -11.37346 -11.15106 -11.04578 -10.91130 -10.85842 -10.76578 -10.40984 -10.36643 -10.15720 -9.72727 -9.65189 -9.52207 -9.39578 -9.02244 -8.67097 -8.60156 -8.39899 -6.74951 -5.97624 -3.48144 0.30714 1.02176 1.85894 2.34798 2.81098 2.98714 3.21191 3.30489 3.32614 3.57699 3.78092 4.26104 4.31582 4.32109 4.41425 4.59361 4.79573 4.96269 5.04567 5.10923 5.16896 5.30210 5.31350 5.34614 5.59943 5.63148 5.81333 5.91979 5.98745 6.07338 6.11473 6.16502 6.18777 6.30646 6.33218 6.41169 6.43625 6.46809 6.53485 6.60827 6.76219 6.84871 6.92661 6.94784 7.09304 7.38898 7.47662 7.66931 7.67196 8.01468 8.34508 8.57541 9.06568 9.67842 10.25977 11.08431 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003203 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.237753 B = 8740.200216 C =10261.120493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.582 5.582 4 C -0.267 4.267 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.278 1.278 12 C 0.173 3.827 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.692 5.692 17 C 0.547 3.453 18 O -0.554 6.554 19 C -0.130 4.130 20 C -0.054 4.054 21 C -0.138 4.138 22 C 0.148 3.852 23 N -0.410 5.410 24 C -0.050 4.050 25 C -0.025 4.025 26 N -0.487 5.487 27 C 0.189 3.811 28 C -0.144 4.144 29 C -0.036 4.036 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.256 0.744 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.411 0.589 42 H 0.145 0.855 43 H 0.137 0.863 44 H 0.180 0.820 45 H 0.175 0.825 46 H 0.209 0.791 47 H 0.136 0.864 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 3.610 1.206 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.397 4.397 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.065 3.935 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.342 5.342 17 C 0.333 3.667 18 O -0.435 6.435 19 C -0.134 4.134 20 C -0.074 4.074 21 C -0.157 4.157 22 C 0.055 3.945 23 N -0.089 5.089 24 C -0.180 4.180 25 C -0.170 4.170 26 N -0.204 5.204 27 C -0.092 4.092 28 C -0.164 4.164 29 C -0.055 4.055 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.249 0.751 42 H 0.163 0.837 43 H 0.154 0.846 44 H 0.197 0.803 45 H 0.192 0.808 46 H 0.226 0.774 47 H 0.154 0.846 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.217 3.668 2.053 14.825 hybrid contribution 0.984 0.535 -1.354 1.757 sum -13.233 4.203 0.699 13.902 Atomic orbital electron populations 1.22422 1.00024 0.99042 1.01357 1.20781 0.91628 0.87471 0.98839 1.43877 1.75932 1.08282 1.02258 1.19097 1.07930 1.18872 0.93755 0.91818 1.25184 0.94466 1.01345 0.97737 1.69993 1.07208 1.36158 1.39633 0.86438 0.77212 0.81848 0.82158 1.21302 1.21655 1.20317 1.20542 0.89035 0.99537 0.84339 0.87982 1.21997 1.01021 0.98162 0.99159 1.22249 0.89021 0.95762 0.95437 1.45921 1.12061 1.57241 1.18992 1.18109 0.82645 0.79840 0.86088 1.90737 1.81945 1.52631 1.18192 1.20238 0.95648 1.02386 0.95078 1.21402 0.99169 0.93657 0.93141 1.20802 0.91464 1.02389 1.01073 1.17995 0.87890 0.96223 0.92395 1.43232 1.11571 1.41635 1.12485 1.22869 1.02448 1.05586 0.87109 1.22380 0.90717 1.05146 0.98805 1.70332 1.31886 1.17227 1.00923 1.25316 0.81331 1.01415 1.01132 1.20740 1.00846 1.02149 0.92648 1.21125 0.90570 0.93693 1.00112 0.94790 0.93166 0.93509 0.94076 0.94382 0.93437 0.94926 0.90574 0.94643 0.92584 0.92744 0.75118 0.83740 0.84554 0.80301 0.80796 0.77407 0.84607 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.95 37.16 0.37 -2.54 16 2 C 0.14 2.68 5.75 -4.04 -0.02 2.65 16 3 N -0.58 -12.34 1.88 -165.67 -0.31 -12.65 16 4 C -0.27 -6.24 9.07 -15.06 -0.14 -6.37 16 5 H 0.06 1.50 7.89 -52.49 -0.41 1.08 16 6 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -22.60 10.90 55.49 0.60 -22.00 16 8 Si 0.89 19.20 29.59 -169.99 -5.03 14.17 16 9 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.17 3.50 1.95 -67.93 -0.13 3.37 16 13 H 0.10 2.36 5.94 -51.93 -0.31 2.05 16 14 C -0.14 -2.79 9.05 37.16 0.34 -2.46 16 15 C 0.10 1.84 4.36 -4.04 -0.02 1.82 16 16 N -0.69 -11.85 4.23 -61.31 -0.26 -12.11 16 17 C 0.55 9.15 7.72 -12.42 -0.10 9.05 16 18 O -0.55 -10.72 16.34 5.30 0.09 -10.64 16 19 C -0.13 -1.77 5.88 -104.95 -0.62 -2.39 16 20 C -0.05 -0.67 9.53 -39.22 -0.37 -1.04 16 21 C -0.14 -1.48 9.45 -39.47 -0.37 -1.86 16 22 C 0.15 1.57 6.64 -83.60 -0.55 1.01 16 23 N -0.41 -4.26 2.98 -62.06 -0.19 -4.44 16 24 C -0.05 -0.48 10.85 -16.45 -0.18 -0.66 16 25 C -0.02 -0.25 11.85 -17.81 -0.21 -0.47 16 26 N -0.49 -5.80 11.24 -14.46 -0.16 -5.96 16 27 C 0.19 1.91 11.91 -89.58 -1.07 0.84 16 28 C -0.14 -1.41 9.45 -39.47 -0.37 -1.78 16 29 C -0.04 -0.41 9.58 -39.22 -0.38 -0.79 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.89 5.32 -51.93 -0.28 0.62 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.82 8.09 -51.93 -0.42 0.41 16 34 H 0.04 0.71 6.29 -51.93 -0.33 0.38 16 35 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 36 H 0.03 0.58 6.56 -51.93 -0.34 0.24 16 37 H 0.08 1.68 7.69 -51.93 -0.40 1.28 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.05 6.98 -51.93 -0.36 0.69 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.41 7.08 5.76 -40.82 -0.24 6.85 16 42 H 0.14 1.79 6.39 -52.49 -0.34 1.46 16 43 H 0.14 1.22 6.79 -52.48 -0.36 0.86 16 44 H 0.18 1.27 7.13 -52.48 -0.37 0.90 16 45 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 46 H 0.21 1.37 7.05 -52.49 -0.37 1.00 16 47 H 0.14 0.94 6.75 -52.48 -0.35 0.58 16 48 H 0.15 1.64 7.64 -52.49 -0.40 1.23 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -28.74 387.52 -9.85 -38.58 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.52 Total: 10.58 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.91 Total: -1.37 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.31 Total: -57.16 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.74 -9.85 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154492845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.658 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds