Wall clock time and date at job start Wed Apr 1 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46502 * 109.46814 * 2 1 4 4 C 1.36931 * 119.99924 * 84.27558 * 3 2 1 5 5 H 1.08001 * 120.00020 * 28.83716 * 4 3 2 6 6 C 1.38812 * 119.99768 * 209.11054 * 4 3 2 7 7 N 1.31617 * 120.00090 * 18.62291 * 6 4 3 8 8 Si 1.86808 * 119.99806 * 198.62551 * 6 4 3 9 9 H 1.48491 * 109.47217 * 89.99896 * 8 6 4 10 10 H 1.48498 * 109.46949 * 210.00243 * 8 6 4 11 11 H 1.48504 * 109.47161 * 329.99776 * 8 6 4 12 12 C 1.46495 * 119.99713 * 264.27130 * 3 2 1 13 13 H 1.09001 * 109.47100 * 183.53801 * 12 3 2 14 14 C 1.53003 * 109.47198 * 63.54372 * 12 3 2 15 15 C 1.53003 * 109.47707 * 303.54126 * 12 3 2 16 16 N 1.46506 * 109.46759 * 305.00427 * 15 12 3 17 17 C 1.34771 * 119.99761 * 180.02562 * 16 15 12 18 18 O 1.21552 * 120.00276 * 359.97438 * 17 16 15 19 19 C 1.47863 * 120.00050 * 179.97438 * 17 16 15 20 20 C 1.39619 * 120.10886 * 359.71779 * 19 17 16 21 21 C 1.37977 * 119.98536 * 179.74394 * 20 19 17 22 22 C 1.38265 * 120.21732 * 0.53495 * 21 20 19 23 23 C 1.38909 * 120.22653 * 359.74439 * 22 21 20 24 24 N 1.40212 * 119.99975 * 179.97438 * 23 22 21 25 25 C 1.35223 * 126.04879 * 359.97438 * 24 23 22 26 26 C 1.35321 * 107.71524 * 179.97438 * 25 24 23 27 27 C 1.39925 * 107.92876 * 0.02562 * 26 25 24 28 28 N 1.30883 * 108.24301 * 359.74038 * 27 26 25 29 29 C 1.38601 * 120.00938 * 359.97297 * 23 22 21 30 30 H 1.09000 * 109.46725 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47271 * 59.99949 * 1 2 3 32 32 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46725 * 240.00162 * 2 1 3 34 34 H 1.08996 * 109.46841 * 119.99733 * 2 1 3 35 35 H 0.96998 * 119.99518 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47086 * 299.99442 * 14 12 3 37 37 H 1.08994 * 109.47524 * 59.99594 * 14 12 3 38 38 H 1.09001 * 109.47054 * 179.97438 * 14 12 3 39 39 H 1.09000 * 109.47146 * 64.99776 * 15 12 3 40 40 H 1.09001 * 109.47446 * 185.00424 * 15 12 3 41 41 H 0.96996 * 119.99742 * 359.97438 * 16 15 12 42 42 H 1.08005 * 120.01163 * 0.02685 * 20 19 17 43 43 H 1.08005 * 119.89234 * 180.27651 * 21 20 19 44 44 H 1.08000 * 119.88431 * 179.71387 * 22 21 20 45 45 H 1.07998 * 126.14371 * 359.97438 * 25 24 23 46 46 H 1.07996 * 126.03368 * 180.02562 * 26 25 24 47 47 H 1.07997 * 125.88023 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.10588 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1350 2.0662 1.1800 5 1 2.3292 1.5313 2.0979 6 6 1.9980 3.4474 1.1971 7 7 1.4075 4.0627 0.1946 8 14 2.6519 4.4329 2.6431 9 1 4.0597 4.8245 2.3791 10 1 1.8246 5.6526 2.8254 11 1 2.5910 3.6050 3.8745 12 6 2.3819 2.0296 -1.2624 13 1 2.7793 3.0239 -1.0589 14 6 1.1416 2.1481 -2.1505 15 6 3.4438 1.1926 -1.9785 16 7 4.5829 0.9787 -1.0824 17 6 5.6455 0.2637 -1.5022 18 8 5.6585 -0.2039 -2.6240 19 6 6.7954 0.0482 -0.5980 20 6 6.7855 0.5893 0.6890 21 6 7.8576 0.3822 1.5325 22 6 8.9487 -0.3510 1.1038 23 6 8.9705 -0.8885 -0.1769 24 7 10.0796 -1.6308 -0.6068 25 6 11.1887 -1.8974 0.1195 26 6 12.0178 -2.6381 -0.6519 27 6 11.3962 -2.8308 -1.8907 28 7 10.2327 -2.2320 -1.8627 29 6 7.8961 -0.6912 -1.0299 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3115 5.0278 0.2069 36 1 0.7441 1.1538 -2.3541 37 1 0.3851 2.7444 -1.6405 38 1 1.4120 2.6309 -3.0896 39 1 3.0179 0.2298 -2.2610 40 1 3.7787 1.7183 -2.8727 41 1 4.5726 1.3522 -0.1873 42 1 5.9367 1.1661 1.0260 43 1 7.8464 0.7977 2.5293 44 1 9.7870 -0.5059 1.7669 45 1 11.3787 -1.5767 1.1331 46 1 12.9879 -3.0143 -0.3625 47 1 11.8042 -3.3827 -2.7245 48 1 7.9112 -1.1088 -2.0258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155845544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:36 Heat of formation + Delta-G solvation = 97.236375 kcal Electronic energy + Delta-G solvation = -29600.865880 eV Core-core repulsion = 25658.577205 eV Total energy + Delta-G solvation = -3942.288675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.73493 -39.94169 -38.32941 -36.89591 -34.07472 -33.53958 -31.91786 -31.57317 -30.90855 -30.26009 -29.10094 -28.35348 -25.85129 -24.13011 -23.85688 -23.23254 -21.65225 -21.52642 -20.77719 -19.83095 -19.40588 -18.47551 -17.08114 -16.56856 -16.27077 -15.77700 -15.49975 -15.03979 -14.93762 -14.78852 -14.51687 -14.14559 -13.95755 -13.70469 -13.69557 -13.30127 -13.02755 -12.90439 -12.68081 -12.37323 -12.04868 -11.92245 -11.64831 -11.59037 -11.44777 -11.33050 -11.07154 -10.90297 -10.87306 -10.54582 -10.51273 -10.32817 -9.95443 -9.63642 -9.58572 -9.53369 -9.40705 -9.21791 -8.58706 -8.46274 -8.27404 -6.78948 -5.91803 -3.35618 0.51486 0.89903 1.90737 2.12601 2.52662 3.02971 3.26890 3.35595 3.37474 3.57109 3.85798 4.27781 4.38258 4.42143 4.65058 4.68283 4.94370 5.01044 5.10676 5.22842 5.24820 5.34514 5.40642 5.41936 5.63008 5.72190 5.86467 5.98967 6.08219 6.12028 6.14369 6.18902 6.30834 6.36693 6.42338 6.43833 6.47754 6.53778 6.68709 6.70734 6.76798 6.92835 6.94878 7.01447 7.24808 7.38218 7.48620 7.58087 7.73592 8.05096 8.35824 8.61982 9.11312 9.73845 10.28842 11.15264 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002793 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.457516 B =10023.979332 C =11134.947006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.100 3.900 16 N -0.694 5.694 17 C 0.547 3.453 18 O -0.550 6.550 19 C -0.101 4.101 20 C -0.090 4.090 21 C -0.098 4.098 22 C -0.122 4.122 23 C 0.143 3.857 24 N -0.319 5.319 25 C 0.051 3.949 26 C -0.265 4.265 27 C 0.051 3.949 28 N -0.285 5.285 29 C -0.063 4.063 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.411 0.589 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.178 0.822 46 H 0.153 0.847 47 H 0.189 0.811 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 -8.706 1.795 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.085 0.915 6 C -0.192 4.192 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.345 5.345 17 C 0.333 3.667 18 O -0.429 6.429 19 C -0.104 4.104 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.143 4.143 23 C 0.051 3.949 24 N -0.094 5.094 25 C -0.091 4.091 26 C -0.294 4.294 27 C -0.136 4.136 28 N -0.104 5.104 29 C -0.084 4.084 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.195 0.805 46 H 0.171 0.829 47 H 0.206 0.794 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.197 -8.539 0.363 17.436 hybrid contribution 0.952 0.574 1.675 2.010 sum 16.149 -7.966 2.038 18.121 Atomic orbital electron populations 1.22392 0.99758 0.98378 1.02094 1.20804 0.91958 0.87566 0.98159 1.44026 1.73809 1.09746 1.02955 1.19172 1.43287 0.89218 0.87328 0.91513 1.25059 0.98881 0.97891 0.97373 1.70011 1.42596 1.08611 1.32245 0.86399 0.78627 0.79891 0.82516 1.21379 1.21850 1.20460 1.20530 0.90953 0.96598 0.84990 0.87899 1.22120 1.00523 0.99596 0.98034 1.22187 0.86944 1.00705 0.92650 1.45880 1.17117 1.52427 1.19045 1.18132 0.82639 0.79315 0.86614 1.90746 1.81058 1.50836 1.20300 1.19986 0.95337 1.00155 0.94968 1.21624 0.99027 0.97753 0.92511 1.20941 0.92437 0.97973 1.00298 1.20931 1.00177 0.99566 0.93606 1.17392 0.86684 0.96636 0.94177 1.45899 1.13164 1.39556 1.10826 1.22634 0.87467 0.99988 0.99049 1.21594 1.03375 1.09352 0.95040 1.24105 0.92037 0.98715 0.98751 1.77567 1.19835 1.14331 0.98632 1.20939 0.90321 0.96690 1.00403 0.92908 0.93136 0.95354 0.94403 0.94550 0.93549 0.95124 0.90060 0.95127 0.92605 0.92482 0.75161 0.84034 0.84150 0.85019 0.80540 0.82919 0.79396 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.02 37.16 0.37 -2.80 16 2 C 0.14 2.79 5.73 -4.04 -0.02 2.76 16 3 N -0.58 -12.64 1.84 -165.66 -0.30 -12.95 16 4 C -0.26 -6.20 9.50 -15.06 -0.14 -6.35 16 5 H 0.07 1.59 7.90 -52.49 -0.41 1.18 16 6 C 0.01 0.19 4.84 -17.43 -0.08 0.10 16 7 N -0.89 -23.00 10.24 55.49 0.57 -22.43 16 8 Si 0.90 19.58 29.59 -169.99 -5.03 14.55 16 9 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.18 3.70 1.93 -67.93 -0.13 3.57 16 13 H 0.10 2.44 5.93 -51.93 -0.31 2.14 16 14 C -0.14 -2.91 8.25 37.16 0.31 -2.61 16 15 C 0.10 1.91 4.86 -4.04 -0.02 1.89 16 16 N -0.69 -12.50 5.34 -61.24 -0.33 -12.82 16 17 C 0.55 9.95 7.77 -12.32 -0.10 9.85 16 18 O -0.55 -11.64 16.34 5.32 0.09 -11.56 16 19 C -0.10 -1.54 5.87 -104.99 -0.62 -2.15 16 20 C -0.09 -1.15 9.54 -39.16 -0.37 -1.52 16 21 C -0.10 -1.00 10.02 -39.67 -0.40 -1.40 16 22 C -0.12 -1.22 9.45 -39.32 -0.37 -1.59 16 23 C 0.14 1.84 6.68 -83.64 -0.56 1.28 16 24 N -0.32 -3.98 3.80 -10.73 -0.04 -4.02 16 25 C 0.05 0.47 10.80 -17.10 -0.18 0.29 16 26 C -0.26 -2.24 10.81 -39.99 -0.43 -2.67 16 27 C 0.05 0.51 12.03 -17.32 -0.21 0.30 16 28 N -0.28 -3.87 11.86 30.64 0.36 -3.50 16 29 C -0.06 -0.95 9.21 -39.00 -0.36 -1.31 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.99 6.03 -51.93 -0.31 0.67 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 34 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 37 H 0.08 1.88 7.21 -51.93 -0.37 1.51 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.09 6.76 -51.93 -0.35 0.74 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.41 7.25 6.11 -40.82 -0.25 7.00 16 42 H 0.14 1.77 6.40 -52.48 -0.34 1.44 16 43 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.13 0.89 6.72 -52.49 -0.35 0.53 16 45 H 0.18 0.96 7.03 -52.49 -0.37 0.59 16 46 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.15 2.52 7.28 -52.48 -0.38 2.14 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -29.81 391.01 -8.75 -38.56 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.63 Total: 10.65 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.32 Total: -2.36 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.26 Total: -55.73 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.81 -8.75 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155845544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.794 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds