Wall clock time and date at job start Wed Apr 1 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46502 * 109.46814 * 2 1 4 4 C 1.36931 * 119.99924 * 84.27558 * 3 2 1 5 5 H 1.08001 * 120.00020 * 28.83716 * 4 3 2 6 6 C 1.38812 * 119.99768 * 209.11054 * 4 3 2 7 7 N 1.31617 * 120.00090 * 18.62291 * 6 4 3 8 8 Si 1.86808 * 119.99806 * 198.62551 * 6 4 3 9 9 H 1.48491 * 109.47217 * 89.99896 * 8 6 4 10 10 H 1.48498 * 109.46949 * 210.00243 * 8 6 4 11 11 H 1.48504 * 109.47161 * 329.99776 * 8 6 4 12 12 C 1.46495 * 119.99713 * 264.27130 * 3 2 1 13 13 H 1.09001 * 109.47100 * 183.53801 * 12 3 2 14 14 C 1.53003 * 109.47198 * 63.54372 * 12 3 2 15 15 C 1.53003 * 109.47707 * 303.54126 * 12 3 2 16 16 N 1.46506 * 109.46759 * 305.00427 * 15 12 3 17 17 C 1.34771 * 119.99761 * 180.02562 * 16 15 12 18 18 O 1.21552 * 120.00276 * 359.97438 * 17 16 15 19 19 C 1.47863 * 120.00050 * 179.97438 * 17 16 15 20 20 C 1.39619 * 120.10886 * 359.71779 * 19 17 16 21 21 C 1.37977 * 119.98536 * 179.74394 * 20 19 17 22 22 C 1.38265 * 120.21732 * 0.53495 * 21 20 19 23 23 C 1.38909 * 120.22653 * 359.74439 * 22 21 20 24 24 N 1.40212 * 119.99975 * 179.97438 * 23 22 21 25 25 C 1.35223 * 126.04879 * 359.97438 * 24 23 22 26 26 C 1.35321 * 107.71524 * 179.97438 * 25 24 23 27 27 C 1.39925 * 107.92876 * 0.02562 * 26 25 24 28 28 N 1.30883 * 108.24301 * 359.74038 * 27 26 25 29 29 C 1.38601 * 120.00938 * 359.97297 * 23 22 21 30 30 H 1.09000 * 109.46725 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47271 * 59.99949 * 1 2 3 32 32 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46725 * 240.00162 * 2 1 3 34 34 H 1.08996 * 109.46841 * 119.99733 * 2 1 3 35 35 H 0.96998 * 119.99518 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47086 * 299.99442 * 14 12 3 37 37 H 1.08994 * 109.47524 * 59.99594 * 14 12 3 38 38 H 1.09001 * 109.47054 * 179.97438 * 14 12 3 39 39 H 1.09000 * 109.47146 * 64.99776 * 15 12 3 40 40 H 1.09001 * 109.47446 * 185.00424 * 15 12 3 41 41 H 0.96996 * 119.99742 * 359.97438 * 16 15 12 42 42 H 1.08005 * 120.01163 * 0.02685 * 20 19 17 43 43 H 1.08005 * 119.89234 * 180.27651 * 21 20 19 44 44 H 1.08000 * 119.88431 * 179.71387 * 22 21 20 45 45 H 1.07998 * 126.14371 * 359.97438 * 25 24 23 46 46 H 1.07996 * 126.03368 * 180.02562 * 26 25 24 47 47 H 1.07997 * 125.88023 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.10588 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1350 2.0662 1.1800 5 1 2.3292 1.5313 2.0979 6 6 1.9980 3.4474 1.1971 7 7 1.4075 4.0627 0.1946 8 14 2.6519 4.4329 2.6431 9 1 4.0597 4.8245 2.3791 10 1 1.8246 5.6526 2.8254 11 1 2.5910 3.6050 3.8745 12 6 2.3819 2.0296 -1.2624 13 1 2.7793 3.0239 -1.0589 14 6 1.1416 2.1481 -2.1505 15 6 3.4438 1.1926 -1.9785 16 7 4.5829 0.9787 -1.0824 17 6 5.6455 0.2637 -1.5022 18 8 5.6585 -0.2039 -2.6240 19 6 6.7954 0.0482 -0.5980 20 6 6.7855 0.5893 0.6890 21 6 7.8576 0.3822 1.5325 22 6 8.9487 -0.3510 1.1038 23 6 8.9705 -0.8885 -0.1769 24 7 10.0796 -1.6308 -0.6068 25 6 11.1887 -1.8974 0.1195 26 6 12.0178 -2.6381 -0.6519 27 6 11.3962 -2.8308 -1.8907 28 7 10.2327 -2.2320 -1.8627 29 6 7.8961 -0.6912 -1.0299 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3115 5.0278 0.2069 36 1 0.7441 1.1538 -2.3541 37 1 0.3851 2.7444 -1.6405 38 1 1.4120 2.6309 -3.0896 39 1 3.0179 0.2298 -2.2610 40 1 3.7787 1.7183 -2.8727 41 1 4.5726 1.3522 -0.1873 42 1 5.9367 1.1661 1.0260 43 1 7.8464 0.7977 2.5293 44 1 9.7870 -0.5059 1.7669 45 1 11.3787 -1.5767 1.1331 46 1 12.9879 -3.0143 -0.3625 47 1 11.8042 -3.3827 -2.7245 48 1 7.9112 -1.1088 -2.0258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155845544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:34 Heat of formation + Delta-G solvation = 81.048918 kcal Electronic energy + Delta-G solvation = -29601.567821 eV Core-core repulsion = 25658.577205 eV Total energy + Delta-G solvation = -3942.990616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.50870 -41.19184 -39.51738 -38.53607 -35.51304 -34.58520 -33.71064 -32.71086 -32.24170 -31.13488 -30.10929 -29.98004 -27.31494 -25.83624 -24.89651 -24.27434 -23.28563 -22.50464 -21.57948 -21.15690 -20.83799 -19.59936 -18.71598 -17.70880 -17.37791 -17.03926 -16.60811 -16.47357 -16.27368 -15.93882 -15.73927 -15.62554 -15.25312 -14.82362 -14.79413 -14.43549 -14.36103 -14.11157 -13.76161 -13.67507 -13.59537 -13.27572 -13.09043 -12.98260 -12.87870 -12.80337 -12.62442 -12.58328 -12.19614 -12.05469 -11.72274 -11.67731 -11.42714 -11.28618 -11.26587 -11.07301 -10.42584 -10.26269 -10.17244 -9.93626 -9.13077 -8.59242 -7.78645 -5.23533 -0.41108 -0.08046 1.10072 1.35784 1.53761 1.57828 1.63827 1.82046 1.87376 2.21167 2.58759 2.75548 3.36202 3.43017 3.62689 3.67287 3.79574 3.91210 4.03398 4.06969 4.19167 4.26331 4.37387 4.45266 4.51473 4.64686 4.70907 4.75027 4.80713 4.83513 4.88086 4.90496 5.02902 5.04069 5.07964 5.11696 5.16812 5.18251 5.24865 5.33480 5.43762 5.54853 5.60626 5.70268 5.75835 5.76851 5.91561 6.15900 6.49850 6.60093 6.63377 7.17276 7.26229 7.94783 8.45997 9.26450 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002793 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.457516 B =10023.979332 C =11134.947006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.257 4.257 5 H 0.068 0.932 6 C -0.037 4.037 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.308 1.308 11 H -0.271 1.271 12 C 0.185 3.815 13 H 0.076 0.924 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.691 5.691 17 C 0.546 3.454 18 O -0.589 6.589 19 C -0.120 4.120 20 C -0.095 4.095 21 C -0.084 4.084 22 C -0.102 4.102 23 C 0.138 3.862 24 N -0.338 5.338 25 C 0.050 3.950 26 C -0.264 4.264 27 C 0.049 3.951 28 N -0.348 5.348 29 C -0.085 4.085 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.247 0.753 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.413 0.587 42 H 0.142 0.858 43 H 0.180 0.820 44 H 0.177 0.823 45 H 0.219 0.781 46 H 0.186 0.814 47 H 0.214 0.786 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.036 -9.623 4.553 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.387 4.387 5 H 0.086 0.914 6 C -0.233 4.233 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.236 1.236 11 H -0.196 1.196 12 C 0.077 3.923 13 H 0.094 0.906 14 C -0.193 4.193 15 C -0.014 4.014 16 N -0.341 5.341 17 C 0.334 3.666 18 O -0.472 6.472 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.102 4.102 22 C -0.123 4.123 23 C 0.046 3.954 24 N -0.114 5.114 25 C -0.091 4.091 26 C -0.292 4.292 27 C -0.137 4.137 28 N -0.167 5.167 29 C -0.107 4.107 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.251 0.749 42 H 0.160 0.840 43 H 0.197 0.803 44 H 0.194 0.806 45 H 0.235 0.765 46 H 0.203 0.797 47 H 0.230 0.770 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.867 -9.482 3.139 20.469 hybrid contribution 0.238 0.752 0.821 1.138 sum 18.105 -8.730 3.960 20.487 Atomic orbital electron populations 1.22265 0.99041 0.99778 1.00553 1.20876 0.92439 0.86494 0.98718 1.44118 1.74116 1.10286 1.02675 1.19356 1.42040 0.89383 0.87948 0.91431 1.25638 0.99555 0.98769 0.99384 1.70161 1.44090 1.08081 1.33857 0.85496 0.77879 0.77952 0.80440 1.20719 1.23588 1.19618 1.20349 0.91429 0.95456 0.85047 0.90602 1.21968 0.99457 0.99702 0.98123 1.21943 0.86879 1.00019 0.92560 1.45808 1.16898 1.52483 1.18902 1.18626 0.83174 0.78238 0.86539 1.90710 1.81901 1.52431 1.22157 1.19712 0.94481 1.02429 0.95789 1.21706 1.00251 0.97723 0.91729 1.21382 0.90991 0.96639 1.01184 1.21414 1.01130 0.97233 0.92499 1.17602 0.86262 0.96686 0.94881 1.46006 1.13976 1.40340 1.11124 1.23435 0.86060 0.99146 1.00476 1.22060 1.04415 1.08677 0.94019 1.24735 0.91157 0.97511 1.00317 1.77544 1.22100 1.16649 1.00398 1.20720 0.91901 0.98138 0.99894 0.94965 0.94041 0.92468 0.93700 0.94059 0.94407 0.94082 0.92956 0.93812 0.92910 0.92610 0.74853 0.84029 0.80251 0.80550 0.76496 0.79689 0.76955 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 10.02 71.99 0.72 -5.13 16 2 C 0.14 5.45 5.73 86.38 0.49 5.94 16 3 N -0.59 -25.63 1.84 -678.02 -1.25 -26.88 16 4 C -0.26 -12.19 9.50 84.03 0.80 -11.40 16 5 H 0.07 3.16 7.90 -2.91 -0.02 3.14 16 6 C -0.04 -1.80 4.84 84.86 0.41 -1.39 16 7 N -0.92 -48.31 10.24 21.65 0.22 -48.09 16 8 Si 0.95 40.16 29.59 68.60 2.03 42.19 16 9 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.31 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 C 0.18 7.86 1.93 44.99 0.09 7.94 16 13 H 0.08 3.70 5.93 -2.39 -0.01 3.69 16 14 C -0.13 -5.49 8.25 71.98 0.59 -4.90 16 15 C 0.11 4.35 4.86 86.38 0.42 4.77 16 16 N -0.69 -25.50 5.34 -465.94 -2.49 -27.99 16 17 C 0.55 20.76 7.77 86.79 0.67 21.43 16 18 O -0.59 -26.49 16.34 -3.88 -0.06 -26.56 16 19 C -0.12 -3.77 5.87 -20.10 -0.12 -3.89 16 20 C -0.09 -2.29 9.54 22.54 0.21 -2.08 16 21 C -0.08 -1.39 10.02 22.21 0.22 -1.17 16 22 C -0.10 -1.65 9.45 22.44 0.21 -1.44 16 23 C 0.14 3.39 6.68 38.05 0.25 3.65 16 24 N -0.34 -8.03 3.80 -187.86 -0.71 -8.74 16 25 C 0.05 0.74 10.80 83.50 0.90 1.65 16 26 C -0.26 -3.64 10.81 22.00 0.24 -3.41 16 27 C 0.05 0.92 12.03 85.24 1.03 1.95 16 28 N -0.35 -9.56 11.86 -56.96 -0.68 -10.24 16 29 C -0.09 -2.69 9.21 22.65 0.21 -2.49 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.60 6.03 -2.39 -0.01 1.58 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.68 6.35 -2.39 -0.02 1.66 16 34 H 0.04 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 36 H 0.04 1.57 6.50 -2.39 -0.02 1.55 16 37 H 0.05 2.47 7.21 -2.39 -0.02 2.45 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 2.09 6.76 -2.39 -0.02 2.07 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.41 14.77 6.11 -92.71 -0.57 14.20 16 42 H 0.14 3.38 6.40 -2.91 -0.02 3.36 16 43 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.18 1.24 6.72 -2.91 -0.02 1.22 16 45 H 0.22 1.12 7.03 -2.91 -0.02 1.10 16 46 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 47 H 0.21 2.47 8.06 -2.91 -0.02 2.44 16 48 H 0.12 4.38 7.28 -2.91 -0.02 4.35 16 Total: -1.00 -68.97 391.01 4.84 -64.13 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.42 Total: 32.13 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.36 Total: 10.04 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.90 Total: -121.93 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -68.97 4.84 -64.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155845544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.177 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds