Wall clock time and date at job start Wed Apr 1 2020 01:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46722 * 2 1 4 4 C 1.36940 * 119.99519 * 275.73029 * 3 2 1 5 5 H 1.07998 * 120.00141 * 33.26971 * 4 3 2 6 6 C 1.38817 * 119.99804 * 213.27363 * 4 3 2 7 7 N 1.31613 * 119.99914 * 17.26756 * 6 4 3 8 8 Si 1.86806 * 119.99735 * 197.27001 * 6 4 3 9 9 H 1.48500 * 109.47078 * 59.99778 * 8 6 4 10 10 H 1.48500 * 109.46909 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46906 * 299.99814 * 8 6 4 12 12 C 1.46499 * 120.00363 * 95.73244 * 3 2 1 13 13 H 1.08993 * 109.46897 * 180.08803 * 12 3 2 14 14 C 1.52993 * 109.46817 * 60.08708 * 12 3 2 15 15 C 1.52993 * 109.46971 * 300.08759 * 12 3 2 16 16 N 1.46501 * 109.47136 * 305.00064 * 15 12 3 17 17 C 1.34782 * 119.99965 * 180.02562 * 16 15 12 18 18 O 1.21570 * 119.99800 * 359.97438 * 17 16 15 19 19 C 1.47645 * 119.99935 * 179.97438 * 17 16 15 20 20 C 1.40248 * 120.49585 * 179.97438 * 19 17 16 21 21 C 1.38002 * 118.35816 * 179.97438 * 20 19 17 22 22 C 1.39179 * 119.25938 * 0.02562 * 21 20 19 23 23 N 1.39407 * 119.53408 * 179.97438 * 22 21 20 24 24 C 1.36714 * 125.68472 * 359.69638 * 23 22 21 25 25 C 1.34775 * 108.18686 * 179.89026 * 24 23 22 26 26 C 1.41016 * 107.49927 * 0.36407 * 25 24 23 27 27 C 1.34769 * 107.50318 * 359.77340 * 26 25 24 28 28 N 1.32452 * 120.93727 * 0.02562 * 22 21 20 29 29 C 1.31637 * 121.80050 * 359.97032 * 28 22 21 30 30 H 1.08999 * 109.46977 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.47150 * 60.00415 * 1 2 3 32 32 H 1.09003 * 109.46693 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46977 * 239.99973 * 2 1 3 34 34 H 1.08999 * 109.47150 * 119.99585 * 2 1 3 35 35 H 0.97003 * 119.99921 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47464 * 299.99748 * 14 12 3 37 37 H 1.08997 * 109.47659 * 60.00511 * 14 12 3 38 38 H 1.09003 * 109.46901 * 180.02562 * 14 12 3 39 39 H 1.09000 * 109.46969 * 185.00055 * 15 12 3 40 40 H 1.08998 * 109.47463 * 65.00020 * 15 12 3 41 41 H 0.96998 * 120.00402 * 359.97438 * 16 15 12 42 42 H 1.07996 * 120.82153 * 0.04953 * 20 19 17 43 43 H 1.08001 * 120.36800 * 180.29602 * 21 20 19 44 44 H 1.08003 * 125.91044 * 0.02562 * 24 23 22 45 45 H 1.07999 * 126.24887 * 180.15817 * 25 24 23 46 46 H 1.08002 * 126.25209 * 179.79655 * 26 25 24 47 47 H 1.08000 * 125.91047 * 179.97438 * 27 26 25 48 48 H 1.07996 * 119.68412 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0662 -1.1801 5 1 1.4369 1.8809 -1.9832 6 6 3.1500 2.9987 -1.3440 7 7 4.1869 2.9918 -0.5335 8 14 3.0443 4.2631 -2.7150 9 1 1.8240 5.0895 -2.5332 10 1 4.2440 5.1373 -2.6757 11 1 2.9806 3.5678 -4.0257 12 6 2.3819 2.0298 1.2623 13 1 2.7188 3.0472 1.0642 14 6 3.5076 1.2416 1.9347 15 6 1.1629 2.0669 2.1862 16 7 0.0465 2.7173 1.4957 17 6 -1.1388 2.8637 2.1204 18 8 -1.2816 2.4557 3.2566 19 6 -2.2638 3.5197 1.4247 20 6 -3.5018 3.6771 2.0646 21 6 -4.5228 4.2971 1.3735 22 6 -4.2931 4.7418 0.0748 23 7 -5.3207 5.3683 -0.6288 24 6 -6.5845 5.5965 -0.1601 25 6 -7.2845 6.2239 -1.1259 26 6 -6.4280 6.3832 -2.2349 27 6 -5.2343 5.8518 -1.9047 28 7 -3.1125 4.5772 -0.5025 29 6 -2.1114 3.9915 0.1202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8962 3.6437 -0.6479 36 1 3.1708 0.2241 2.1328 37 1 4.3761 1.2151 1.2766 38 1 3.7779 1.7238 2.8742 39 1 1.4080 2.6270 3.0886 40 1 0.8802 1.0493 2.4557 41 1 0.1605 3.0432 0.5893 42 1 -3.6521 3.3230 3.0738 43 1 -5.4879 4.4395 1.8368 44 1 -6.9569 5.3234 0.8162 45 1 -8.3143 6.5431 -1.0633 46 1 -6.6822 6.8466 -3.1767 47 1 -4.3607 5.8141 -2.5385 48 1 -1.1629 3.8756 -0.3830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155924804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:52 Heat of formation + Delta-G solvation = 83.571777 kcal Electronic energy + Delta-G solvation = -29970.107763 eV Core-core repulsion = 26027.226547 eV Total energy + Delta-G solvation = -3942.881217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.94307 -40.32975 -38.83978 -36.96017 -33.96749 -33.51063 -32.82096 -31.94077 -31.24303 -29.71141 -29.10317 -28.21164 -25.86969 -24.28034 -23.98639 -23.74863 -21.78046 -21.05590 -20.40960 -20.03270 -19.37948 -18.88706 -17.65325 -16.85890 -16.73643 -15.64626 -15.40159 -15.28787 -14.98722 -14.87270 -14.40529 -14.19710 -13.93458 -13.69891 -13.47068 -13.34787 -13.18926 -12.92170 -12.75135 -12.54257 -12.39064 -12.26906 -12.17759 -11.89351 -11.56734 -11.11406 -11.01339 -10.83903 -10.76168 -10.37077 -10.28623 -10.20646 -10.10429 -10.07798 -9.69924 -9.57255 -9.50162 -8.65579 -8.55670 -8.49179 -8.37876 -6.73324 -5.94268 -3.43442 0.22971 0.91756 2.02161 2.34444 2.77127 3.04412 3.28906 3.35956 3.37859 3.50316 3.75803 4.01083 4.35259 4.37139 4.61532 4.62936 4.84958 4.97093 5.12630 5.20604 5.23015 5.24939 5.33188 5.38060 5.60030 5.79199 5.88161 5.98244 5.99842 6.00579 6.10988 6.15002 6.19769 6.31881 6.41708 6.49032 6.55333 6.62408 6.62711 6.77073 6.78111 6.86098 6.91472 7.09935 7.10690 7.41284 7.51547 7.57254 7.71717 7.95367 8.36909 8.51136 9.10169 9.71302 10.28529 11.12247 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.003259 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.748901 B = 8588.270366 C =10141.283823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.268 4.268 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.692 5.692 17 C 0.555 3.445 18 O -0.552 6.552 19 C -0.196 4.196 20 C 0.009 3.991 21 C -0.197 4.197 22 C 0.364 3.636 23 N -0.396 5.396 24 C -0.017 4.017 25 C -0.181 4.181 26 C -0.199 4.199 27 C 0.016 3.984 28 N -0.504 5.504 29 C 0.176 3.824 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.256 0.744 36 H 0.030 0.970 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.410 0.590 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.172 0.828 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 3.488 2.887 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.398 4.398 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.342 5.342 17 C 0.341 3.659 18 O -0.433 6.433 19 C -0.202 4.202 20 C -0.018 4.018 21 C -0.219 4.219 22 C 0.137 3.863 23 N -0.071 5.071 24 C -0.142 4.142 25 C -0.205 4.205 26 C -0.223 4.223 27 C -0.110 4.110 28 N -0.215 5.215 29 C 0.017 3.983 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.173 0.827 43 H 0.163 0.837 44 H 0.185 0.815 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.189 0.811 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.040 3.470 2.956 16.675 hybrid contribution -0.030 0.522 -0.434 0.679 sum -16.070 3.992 2.522 16.749 Atomic orbital electron populations 1.22456 1.00091 0.99088 1.01406 1.20762 0.91599 0.87448 0.98814 1.43890 1.76027 1.08271 1.02231 1.19056 1.08842 1.18422 0.93458 0.91793 1.25158 0.94461 1.01289 0.97741 1.69990 1.07781 1.35883 1.39495 0.86505 0.77148 0.81610 0.82306 1.20772 1.21651 1.20781 1.20508 0.88840 0.99643 0.84209 0.88169 1.22016 1.01096 0.97962 0.99267 1.22256 0.87855 0.96406 0.95900 1.45934 1.10775 1.58459 1.19028 1.17840 0.82584 0.79627 0.85887 1.90741 1.83268 1.51135 1.18109 1.21143 0.96599 1.05650 0.96765 1.21563 0.89862 0.90423 0.99933 1.21479 1.01914 1.04635 0.93920 1.18456 0.87201 0.91883 0.88781 1.41495 1.08572 1.44326 1.12744 1.21910 0.83349 1.07608 1.01360 1.21047 1.00174 1.05166 0.94113 1.21084 0.93510 1.07320 1.00355 1.22179 1.00794 1.02341 0.85641 1.67032 0.99092 1.17712 1.37706 1.22996 0.96422 0.88556 0.90324 0.93090 0.93473 0.94805 0.94043 0.94464 0.93413 0.95101 0.90220 0.94799 0.92586 0.92467 0.75192 0.82652 0.83654 0.81497 0.83881 0.83951 0.81110 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.87 37.16 0.37 -2.61 16 2 C 0.14 2.72 5.67 -4.04 -0.02 2.70 16 3 N -0.58 -12.49 1.85 -165.67 -0.31 -12.79 16 4 C -0.27 -6.39 9.26 -15.06 -0.14 -6.53 16 5 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 6 C 0.01 0.35 4.85 -17.43 -0.08 0.26 16 7 N -0.89 -22.90 10.60 55.49 0.59 -22.31 16 8 Si 0.89 19.81 29.59 -169.99 -5.03 14.78 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.18 3.57 1.92 -67.94 -0.13 3.44 16 13 H 0.10 2.33 6.04 -51.93 -0.31 2.01 16 14 C -0.14 -2.83 9.05 37.15 0.34 -2.49 16 15 C 0.10 1.83 4.34 -4.04 -0.02 1.81 16 16 N -0.69 -11.79 3.94 -61.32 -0.24 -12.04 16 17 C 0.56 9.24 7.54 -12.42 -0.09 9.14 16 18 O -0.55 -10.53 16.41 5.30 0.09 -10.44 16 19 C -0.20 -2.77 5.89 -104.81 -0.62 -3.39 16 20 C 0.01 0.10 9.70 -38.91 -0.38 -0.27 16 21 C -0.20 -2.13 9.46 -39.32 -0.37 -2.50 16 22 C 0.36 4.70 7.48 -154.56 -1.16 3.54 16 23 N -0.40 -4.78 2.96 -62.65 -0.19 -4.96 16 24 C -0.02 -0.17 10.71 -16.60 -0.18 -0.35 16 25 C -0.18 -1.71 10.86 -39.76 -0.43 -2.14 16 26 C -0.20 -2.06 10.86 -39.76 -0.43 -2.49 16 27 C 0.02 0.19 10.99 -16.60 -0.18 0.01 16 28 N -0.50 -7.22 9.80 -12.00 -0.12 -7.34 16 29 C 0.18 2.48 10.71 -17.14 -0.18 2.30 16 30 H 0.05 0.90 4.99 -51.93 -0.26 0.64 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.04 0.70 6.45 -51.93 -0.33 0.36 16 35 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 37 H 0.08 1.79 7.39 -51.93 -0.38 1.41 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.06 7.05 -51.93 -0.37 0.70 16 41 H 0.41 7.08 5.95 -40.82 -0.24 6.84 16 42 H 0.16 1.67 7.73 -52.49 -0.41 1.27 16 43 H 0.15 1.10 6.66 -52.49 -0.35 0.75 16 44 H 0.17 1.11 6.96 -52.48 -0.37 0.74 16 45 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.17 1.96 8.03 -52.49 -0.42 1.53 16 48 H 0.18 2.41 6.41 -52.49 -0.34 2.07 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -28.08 388.92 -9.69 -37.77 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.63 Total: 11.02 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.72 Total: 0.46 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.26 Total: -59.44 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.08 -9.69 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155924804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.339 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds