Wall clock time and date at job start Wed Apr 1 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46722 * 2 1 4 4 C 1.36940 * 119.99519 * 275.73029 * 3 2 1 5 5 H 1.07998 * 120.00141 * 33.26971 * 4 3 2 6 6 C 1.38817 * 119.99804 * 213.27363 * 4 3 2 7 7 N 1.31613 * 119.99914 * 17.26756 * 6 4 3 8 8 Si 1.86806 * 119.99735 * 197.27001 * 6 4 3 9 9 H 1.48500 * 109.47078 * 59.99778 * 8 6 4 10 10 H 1.48500 * 109.46909 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46906 * 299.99814 * 8 6 4 12 12 C 1.46499 * 120.00363 * 95.73244 * 3 2 1 13 13 H 1.08993 * 109.46897 * 180.08803 * 12 3 2 14 14 C 1.52993 * 109.46817 * 60.08708 * 12 3 2 15 15 C 1.52993 * 109.46971 * 300.08759 * 12 3 2 16 16 N 1.46501 * 109.47136 * 305.00064 * 15 12 3 17 17 C 1.34782 * 119.99965 * 180.02562 * 16 15 12 18 18 O 1.21570 * 119.99800 * 359.97438 * 17 16 15 19 19 C 1.47645 * 119.99935 * 179.97438 * 17 16 15 20 20 C 1.40248 * 120.49585 * 179.97438 * 19 17 16 21 21 C 1.38002 * 118.35816 * 179.97438 * 20 19 17 22 22 C 1.39179 * 119.25938 * 0.02562 * 21 20 19 23 23 N 1.39407 * 119.53408 * 179.97438 * 22 21 20 24 24 C 1.36714 * 125.68472 * 359.69638 * 23 22 21 25 25 C 1.34775 * 108.18686 * 179.89026 * 24 23 22 26 26 C 1.41016 * 107.49927 * 0.36407 * 25 24 23 27 27 C 1.34769 * 107.50318 * 359.77340 * 26 25 24 28 28 N 1.32452 * 120.93727 * 0.02562 * 22 21 20 29 29 C 1.31637 * 121.80050 * 359.97032 * 28 22 21 30 30 H 1.08999 * 109.46977 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.47150 * 60.00415 * 1 2 3 32 32 H 1.09003 * 109.46693 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46977 * 239.99973 * 2 1 3 34 34 H 1.08999 * 109.47150 * 119.99585 * 2 1 3 35 35 H 0.97003 * 119.99921 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47464 * 299.99748 * 14 12 3 37 37 H 1.08997 * 109.47659 * 60.00511 * 14 12 3 38 38 H 1.09003 * 109.46901 * 180.02562 * 14 12 3 39 39 H 1.09000 * 109.46969 * 185.00055 * 15 12 3 40 40 H 1.08998 * 109.47463 * 65.00020 * 15 12 3 41 41 H 0.96998 * 120.00402 * 359.97438 * 16 15 12 42 42 H 1.07996 * 120.82153 * 0.04953 * 20 19 17 43 43 H 1.08001 * 120.36800 * 180.29602 * 21 20 19 44 44 H 1.08003 * 125.91044 * 0.02562 * 24 23 22 45 45 H 1.07999 * 126.24887 * 180.15817 * 25 24 23 46 46 H 1.08002 * 126.25209 * 179.79655 * 26 25 24 47 47 H 1.08000 * 125.91047 * 179.97438 * 27 26 25 48 48 H 1.07996 * 119.68412 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0662 -1.1801 5 1 1.4369 1.8809 -1.9832 6 6 3.1500 2.9987 -1.3440 7 7 4.1869 2.9918 -0.5335 8 14 3.0443 4.2631 -2.7150 9 1 1.8240 5.0895 -2.5332 10 1 4.2440 5.1373 -2.6757 11 1 2.9806 3.5678 -4.0257 12 6 2.3819 2.0298 1.2623 13 1 2.7188 3.0472 1.0642 14 6 3.5076 1.2416 1.9347 15 6 1.1629 2.0669 2.1862 16 7 0.0465 2.7173 1.4957 17 6 -1.1388 2.8637 2.1204 18 8 -1.2816 2.4557 3.2566 19 6 -2.2638 3.5197 1.4247 20 6 -3.5018 3.6771 2.0646 21 6 -4.5228 4.2971 1.3735 22 6 -4.2931 4.7418 0.0748 23 7 -5.3207 5.3683 -0.6288 24 6 -6.5845 5.5965 -0.1601 25 6 -7.2845 6.2239 -1.1259 26 6 -6.4280 6.3832 -2.2349 27 6 -5.2343 5.8518 -1.9047 28 7 -3.1125 4.5772 -0.5025 29 6 -2.1114 3.9915 0.1202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8962 3.6437 -0.6479 36 1 3.1708 0.2241 2.1328 37 1 4.3761 1.2151 1.2766 38 1 3.7779 1.7238 2.8742 39 1 1.4080 2.6270 3.0886 40 1 0.8802 1.0493 2.4557 41 1 0.1605 3.0432 0.5893 42 1 -3.6521 3.3230 3.0738 43 1 -5.4879 4.4395 1.8368 44 1 -6.9569 5.3234 0.8162 45 1 -8.3143 6.5431 -1.0633 46 1 -6.6822 6.8466 -3.1767 47 1 -4.3607 5.8141 -2.5385 48 1 -1.1629 3.8756 -0.3830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155924804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:51 Heat of formation + Delta-G solvation = 71.284166 kcal Electronic energy + Delta-G solvation = -29970.640594 eV Core-core repulsion = 26027.226547 eV Total energy + Delta-G solvation = -3943.414047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.79241 -41.41093 -40.07273 -38.55516 -35.39383 -34.51114 -33.83115 -33.69387 -32.74080 -30.73991 -29.92251 -29.85449 -27.21776 -25.78950 -25.30735 -24.77736 -23.34123 -22.09339 -21.28274 -21.03832 -21.00390 -19.76625 -19.02702 -18.43560 -17.82683 -16.86339 -16.63282 -16.42542 -16.36095 -16.27385 -15.72212 -15.63288 -15.14449 -14.73986 -14.49285 -14.38800 -14.31513 -14.30277 -13.98206 -13.90864 -13.72476 -13.48537 -13.27392 -13.17647 -13.00561 -12.78541 -12.73183 -12.52639 -12.39976 -12.10045 -11.87034 -11.35731 -11.32047 -11.26426 -11.16064 -11.01431 -10.76580 -10.42489 -9.99556 -9.33163 -9.26891 -8.52396 -7.82442 -5.32037 -0.76730 -0.02788 1.12519 1.49795 1.49957 1.54311 1.57334 1.90432 2.02400 2.21586 2.54191 2.69181 3.05930 3.32286 3.47986 3.60880 3.65036 3.70311 3.83868 4.15226 4.24397 4.27033 4.39140 4.46240 4.48233 4.57577 4.64035 4.67854 4.72701 4.82166 4.86800 4.91514 4.94684 4.99246 5.07532 5.18045 5.23295 5.23673 5.29909 5.32800 5.46259 5.58398 5.71139 5.76732 5.83329 5.89489 6.01898 6.25122 6.49764 6.58494 6.64678 7.15932 7.25547 7.93381 8.45323 9.21243 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.003259 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.748901 B = 8588.270366 C =10141.283823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.061 0.939 6 C -0.026 4.026 7 N -0.912 5.912 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.301 1.301 11 H -0.284 1.284 12 C 0.181 3.819 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.114 3.886 16 N -0.693 5.693 17 C 0.560 3.440 18 O -0.577 6.577 19 C -0.209 4.209 20 C 0.014 3.986 21 C -0.181 4.181 22 C 0.356 3.644 23 N -0.407 5.407 24 C -0.019 4.019 25 C -0.187 4.187 26 C -0.196 4.196 27 C -0.019 4.019 28 N -0.527 5.527 29 C 0.172 3.828 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.249 0.751 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.409 0.591 42 H 0.171 0.829 43 H 0.185 0.815 44 H 0.201 0.799 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.516 3.620 3.710 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.393 4.393 5 H 0.078 0.922 6 C -0.224 4.224 7 N -0.556 5.556 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.227 1.227 11 H -0.210 1.210 12 C 0.073 3.927 13 H 0.089 0.911 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.343 5.343 17 C 0.348 3.652 18 O -0.459 6.459 19 C -0.215 4.215 20 C -0.012 4.012 21 C -0.203 4.203 22 C 0.128 3.872 23 N -0.083 5.083 24 C -0.143 4.143 25 C -0.211 4.211 26 C -0.220 4.220 27 C -0.145 4.145 28 N -0.240 5.240 29 C 0.013 3.987 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.246 0.754 42 H 0.189 0.811 43 H 0.202 0.798 44 H 0.218 0.782 45 H 0.187 0.813 46 H 0.176 0.824 47 H 0.179 0.821 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.103 3.601 3.764 19.801 hybrid contribution 0.794 0.488 -0.731 1.185 sum -18.309 4.089 3.033 19.004 Atomic orbital electron populations 1.22269 0.98218 1.00260 1.00799 1.20829 0.92891 0.86250 0.98680 1.44000 1.76138 1.09131 1.01983 1.19196 1.08023 1.18082 0.94027 0.92159 1.25639 0.94511 1.02836 0.99446 1.70115 1.08273 1.36326 1.40881 0.85710 0.76657 0.79872 0.80312 1.20159 1.22717 1.21033 1.20370 0.89958 0.98049 0.84291 0.91100 1.21881 0.99554 0.98833 0.99197 1.21978 0.87233 0.96604 0.95314 1.45902 1.10918 1.58557 1.18917 1.18096 0.82703 0.78951 0.85496 1.90720 1.83696 1.52363 1.19147 1.20947 0.96747 1.06929 0.96882 1.21774 0.89095 0.89893 1.00461 1.21803 1.03046 1.02729 0.92715 1.18813 0.86957 0.91707 0.89676 1.41682 1.09126 1.44645 1.12824 1.22587 0.82251 1.06683 1.02746 1.21452 1.01275 1.04837 0.93508 1.21428 0.93078 1.06113 1.01336 1.22286 1.01475 1.04382 0.86309 1.66990 0.99950 1.18510 1.38510 1.22855 0.96393 0.89003 0.90433 0.93398 0.94290 0.92704 0.95165 0.93569 0.94206 0.93808 0.93348 0.93095 0.92223 0.92442 0.75375 0.81144 0.79767 0.78189 0.81273 0.82392 0.82056 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.87 71.98 0.71 -4.53 16 2 C 0.14 5.32 5.67 86.38 0.49 5.81 16 3 N -0.59 -25.45 1.85 -678.05 -1.25 -26.71 16 4 C -0.26 -12.67 9.26 84.03 0.78 -11.89 16 5 H 0.06 2.92 7.89 -2.91 -0.02 2.90 16 6 C -0.03 -1.32 4.85 84.86 0.41 -0.91 16 7 N -0.91 -48.17 10.60 21.65 0.23 -47.94 16 8 Si 0.95 41.53 29.59 68.60 2.03 43.56 16 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.18 7.41 1.92 44.99 0.09 7.50 16 13 H 0.07 3.38 6.04 -2.39 -0.01 3.36 16 14 C -0.14 -5.30 9.05 71.98 0.65 -4.65 16 15 C 0.11 4.10 4.34 86.38 0.37 4.47 16 16 N -0.69 -23.60 3.94 -466.17 -1.84 -25.44 16 17 C 0.56 18.32 7.54 86.73 0.65 18.98 16 18 O -0.58 -21.43 16.41 -3.94 -0.06 -21.49 16 19 C -0.21 -5.74 5.89 -19.99 -0.12 -5.86 16 20 C 0.01 0.31 9.70 22.70 0.22 0.53 16 21 C -0.18 -3.36 9.46 22.44 0.21 -3.15 16 22 C 0.36 8.61 7.48 132.92 0.99 9.61 16 23 N -0.41 -9.07 2.96 -352.11 -1.04 -10.11 16 24 C -0.02 -0.31 10.71 83.14 0.89 0.58 16 25 C -0.19 -2.97 10.86 22.16 0.24 -2.73 16 26 C -0.20 -3.71 10.86 22.15 0.24 -3.47 16 27 C -0.02 -0.45 10.99 83.14 0.91 0.46 16 28 N -0.53 -15.01 9.80 -191.88 -1.88 -16.89 16 29 C 0.17 4.87 10.71 85.04 0.91 5.78 16 30 H 0.05 1.64 4.99 -2.39 -0.01 1.63 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.05 1.68 6.45 -2.39 -0.02 1.66 16 35 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 36 H 0.04 1.56 6.67 -2.39 -0.02 1.55 16 37 H 0.05 2.20 7.39 -2.39 -0.02 2.18 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.07 7.05 -2.39 -0.02 2.05 16 41 H 0.41 14.33 5.95 -92.71 -0.55 13.78 16 42 H 0.17 3.19 7.73 -2.91 -0.02 3.16 16 43 H 0.19 1.88 6.66 -2.91 -0.02 1.86 16 44 H 0.20 1.67 6.96 -2.91 -0.02 1.65 16 45 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 47 H 0.16 3.85 8.03 -2.91 -0.02 3.82 16 48 H 0.17 4.79 6.41 -2.91 -0.02 4.77 16 Total: -1.00 -60.88 388.92 5.28 -55.59 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.44 Total: 32.91 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 8.66 Total: 16.52 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.78 Total: -127.09 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.06 Total: -21.49 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -60.88 5.28 -55.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155924804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.879 kcal (2) G-P(sol) polarization free energy of solvation -60.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds