Wall clock time and date at job start Wed Apr 1 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47255 * 2 1 4 4 C 1.36943 * 119.99861 * 275.73365 * 3 2 1 5 5 H 1.07997 * 119.99864 * 33.27511 * 4 3 2 6 6 C 1.38816 * 119.99734 * 213.26838 * 4 3 2 7 7 N 1.31617 * 119.99857 * 17.27042 * 6 4 3 8 8 Si 1.86796 * 119.99825 * 197.26395 * 6 4 3 9 9 H 1.48508 * 109.47056 * 60.00274 * 8 6 4 10 10 H 1.48497 * 109.47082 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47461 * 300.00187 * 8 6 4 12 12 C 1.46497 * 120.00258 * 95.72978 * 3 2 1 13 13 H 1.08999 * 109.47390 * 180.08264 * 12 3 2 14 14 C 1.53002 * 109.46907 * 60.08277 * 12 3 2 15 15 C 1.52999 * 109.47116 * 300.08729 * 12 3 2 16 16 N 1.46494 * 109.47251 * 304.99672 * 15 12 3 17 17 C 1.34777 * 120.00355 * 180.02562 * 16 15 12 18 18 O 1.21522 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.48178 * 120.00461 * 179.72596 * 17 16 15 20 20 C 1.39113 * 119.69809 * 180.27091 * 19 17 16 21 21 C 1.39286 * 118.97481 * 179.97438 * 20 19 17 22 22 N 1.39915 * 120.81907 * 179.97438 * 21 20 19 23 23 C 1.36629 * 125.67655 * 359.69638 * 22 21 20 24 24 C 1.34817 * 108.19116 * 179.83351 * 23 22 21 25 25 C 1.40967 * 107.48321 * 0.42083 * 24 23 22 26 26 C 1.34816 * 107.48306 * 359.73992 * 25 24 23 27 27 C 1.39279 * 118.36261 * 0.02562 * 21 20 19 28 28 C 1.38339 * 119.27142 * 359.97438 * 27 21 20 29 29 N 1.31609 * 120.97607 * 359.72921 * 28 27 21 30 30 H 1.09000 * 109.47076 * 60.00374 * 1 2 3 31 31 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46698 * 300.00011 * 1 2 3 33 33 H 1.09004 * 109.47062 * 239.99890 * 2 1 3 34 34 H 1.08998 * 109.46855 * 120.00119 * 2 1 3 35 35 H 0.97008 * 119.99823 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47513 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.47481 * 300.00539 * 14 12 3 38 38 H 1.09007 * 109.46643 * 60.00522 * 14 12 3 39 39 H 1.09000 * 109.47051 * 184.99392 * 15 12 3 40 40 H 1.09000 * 109.47140 * 64.99961 * 15 12 3 41 41 H 0.97004 * 120.00139 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.50754 * 359.97438 * 20 19 17 43 43 H 1.07994 * 125.90131 * 359.97438 * 23 22 21 44 44 H 1.08000 * 126.25404 * 180.20200 * 24 23 22 45 45 H 1.08002 * 126.25927 * 179.70333 * 25 24 23 46 46 H 1.07999 * 125.90487 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.36875 * 179.97438 * 27 21 20 48 48 H 1.07992 * 119.50945 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1502 2.9986 -1.3439 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7149 9 1 1.8243 5.0896 -2.5331 10 1 4.2450 5.1364 -2.6762 11 1 2.9809 3.5679 -4.0256 12 6 2.3820 2.0296 1.2623 13 1 2.7191 3.0470 1.0643 14 6 3.5076 1.2412 1.9349 15 6 1.1630 2.0668 2.1862 16 7 0.0467 2.7174 1.4958 17 6 -1.1386 2.8641 2.1203 18 8 -1.2814 2.4562 3.2561 19 6 -2.2659 3.5275 1.4242 20 6 -3.4848 3.6806 2.0769 21 6 -4.5341 4.3069 1.4086 22 7 -5.7766 4.4807 2.0281 23 6 -6.1002 4.0755 3.2922 24 6 -7.3810 4.4225 3.5304 25 6 -7.8709 5.0562 2.3703 26 6 -6.8698 5.0785 1.4676 27 6 -4.3165 4.7550 0.1079 28 6 -3.0757 4.5660 -0.4739 29 7 -2.1014 3.9756 0.1851 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8968 3.6430 -0.6481 36 1 3.7786 1.7238 2.8739 37 1 3.1706 0.2237 2.1329 38 1 4.3761 1.2147 1.2766 39 1 1.4081 2.6269 3.0886 40 1 0.8801 1.0493 2.4557 41 1 0.1608 3.0433 0.5893 42 1 -3.6154 3.3192 3.0863 43 1 -5.4429 3.5674 3.9821 44 1 -7.9321 4.2440 4.4419 45 1 -8.8663 5.4510 2.2301 46 1 -6.9229 5.4964 0.4732 47 1 -5.1076 5.2446 -0.4404 48 1 -2.9026 4.9124 -1.4820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156240950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:48 Heat of formation + Delta-G solvation = 81.813964 kcal Electronic energy + Delta-G solvation = -29964.403985 eV Core-core repulsion = 26021.446543 eV Total energy + Delta-G solvation = -3942.957441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.01480 -40.33020 -38.76675 -36.89150 -34.42143 -33.62401 -31.93023 -31.81032 -30.97871 -29.93262 -29.24137 -28.15651 -26.13293 -24.19802 -23.92427 -23.78969 -21.75543 -21.29615 -20.49642 -19.90470 -19.32551 -18.72828 -17.13243 -16.80057 -16.31664 -16.09140 -15.52961 -15.19590 -15.00666 -14.86988 -14.56531 -14.27778 -14.23629 -13.79820 -13.71641 -13.38704 -13.16558 -12.68695 -12.65211 -12.41877 -12.32561 -12.13659 -12.10303 -11.82615 -11.50216 -11.04307 -10.94835 -10.77573 -10.76846 -10.69506 -10.30550 -10.15044 -10.05930 -9.63035 -9.56085 -9.50366 -9.43005 -8.65666 -8.59158 -8.49920 -8.42420 -6.65077 -5.85600 -3.33749 0.37689 0.64860 2.12497 2.38009 2.68275 2.92104 3.35390 3.41667 3.42909 3.44684 3.82647 4.13051 4.34070 4.39688 4.45801 4.68660 4.69543 4.89469 5.09554 5.15312 5.26347 5.29000 5.40484 5.42836 5.48806 5.53675 5.88317 5.90473 5.95220 6.06464 6.14980 6.20629 6.25445 6.37674 6.47507 6.54624 6.56469 6.61661 6.68656 6.81826 6.83360 6.92768 6.98676 7.02306 7.17948 7.47334 7.55325 7.60958 7.80599 8.11668 8.45697 8.60574 9.18524 9.79803 10.36534 11.21280 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002958 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.505139 B = 9462.133075 C =10530.837312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.259 4.259 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.097 3.903 16 N -0.672 5.672 17 C 0.557 3.443 18 O -0.551 6.551 19 C 0.122 3.878 20 C -0.141 4.141 21 C 0.177 3.823 22 N -0.399 5.399 23 C -0.010 4.010 24 C -0.188 4.188 25 C -0.187 4.187 26 C -0.015 4.015 27 C -0.183 4.183 28 C 0.132 3.868 29 N -0.457 5.457 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.254 0.746 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.424 0.576 42 H 0.153 0.847 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.167 0.833 47 H 0.145 0.855 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.174 3.636 3.851 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.389 4.389 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.028 4.028 16 N -0.321 5.321 17 C 0.340 3.660 18 O -0.430 6.430 19 C -0.017 4.017 20 C -0.164 4.164 21 C 0.076 3.924 22 N -0.072 5.072 23 C -0.136 4.136 24 C -0.212 4.212 25 C -0.211 4.211 26 C -0.140 4.140 27 C -0.205 4.205 28 C -0.027 4.027 29 N -0.168 5.168 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.263 0.737 42 H 0.171 0.829 43 H 0.186 0.814 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.184 0.816 47 H 0.162 0.838 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.960 3.280 4.125 17.760 hybrid contribution -0.911 0.977 -0.785 1.549 sum -17.871 4.256 3.340 18.672 Atomic orbital electron populations 1.22446 1.00095 0.98859 1.01532 1.20754 0.91607 0.87441 0.98743 1.43866 1.75932 1.08251 1.02259 1.19034 1.08413 1.18132 0.93295 0.91898 1.25136 0.94525 1.01307 0.97884 1.69995 1.07853 1.36041 1.39684 0.86460 0.77004 0.81683 0.82143 1.20744 1.21820 1.20947 1.20503 0.88745 0.99691 0.84203 0.88138 1.22020 1.01104 0.97927 0.99257 1.22320 0.88057 0.96402 0.96014 1.45904 1.09967 1.56603 1.19653 1.17777 0.82661 0.80035 0.85532 1.90746 1.83083 1.51396 1.17816 1.21262 0.93428 0.96357 0.90655 1.21735 0.91762 1.00524 1.02384 1.18009 0.84620 0.97007 0.92751 1.41596 1.07961 1.44834 1.12777 1.22080 0.98193 1.06572 0.86707 1.21046 0.94639 1.05537 1.00001 1.21040 0.99333 1.06397 0.94321 1.21949 0.86229 1.05254 1.00617 1.22025 1.00568 1.04007 0.93897 1.22784 0.87099 0.92998 0.99862 1.67759 1.33351 1.08586 1.07140 0.93360 0.94933 0.93226 0.94057 0.94504 0.93554 0.94813 0.95116 0.90201 0.92559 0.92446 0.73707 0.82906 0.81377 0.83899 0.83957 0.81579 0.83753 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.87 37.16 0.37 -2.78 16 2 C 0.14 2.86 5.67 -4.04 -0.02 2.84 16 3 N -0.58 -13.13 1.85 -165.66 -0.31 -13.44 16 4 C -0.26 -6.48 9.26 -15.05 -0.14 -6.62 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -23.73 10.60 55.49 0.59 -23.14 16 8 Si 0.90 20.48 29.59 -169.99 -5.03 15.45 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.18 3.78 1.92 -67.93 -0.13 3.65 16 13 H 0.10 2.46 6.04 -51.93 -0.31 2.15 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.58 16 15 C 0.10 1.88 4.34 -4.05 -0.02 1.86 16 16 N -0.67 -12.76 3.98 -61.15 -0.24 -13.01 16 17 C 0.56 10.19 7.58 -12.18 -0.09 10.10 16 18 O -0.55 -11.03 16.32 5.35 0.09 -10.94 16 19 C 0.12 1.92 6.75 -83.05 -0.56 1.36 16 20 C -0.14 -1.92 9.04 -38.87 -0.35 -2.27 16 21 C 0.18 2.08 6.65 -83.39 -0.55 1.52 16 22 N -0.40 -4.35 2.97 -60.75 -0.18 -4.53 16 23 C -0.01 -0.10 10.77 -16.63 -0.18 -0.28 16 24 C -0.19 -1.78 10.86 -39.76 -0.43 -2.21 16 25 C -0.19 -1.68 10.86 -39.76 -0.43 -2.11 16 26 C -0.01 -0.14 10.77 -16.63 -0.18 -0.32 16 27 C -0.18 -1.82 9.53 -39.16 -0.37 -2.20 16 28 C 0.13 1.50 11.17 -17.61 -0.20 1.31 16 29 N -0.46 -6.91 9.54 -9.87 -0.09 -7.00 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.95 4.99 -51.93 -0.26 0.69 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 35 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 38 H 0.08 1.84 7.40 -51.92 -0.38 1.46 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.12 7.05 -51.93 -0.37 0.75 16 41 H 0.42 8.55 7.22 -40.82 -0.29 8.26 16 42 H 0.15 2.00 6.42 -52.49 -0.34 1.66 16 43 H 0.17 1.51 7.09 -52.49 -0.37 1.14 16 44 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.17 1.06 7.08 -52.49 -0.37 0.68 16 47 H 0.14 0.97 6.83 -52.49 -0.36 0.61 16 48 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -29.07 389.35 -9.02 -38.09 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.67 Total: 11.17 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.04 Total: 1.49 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.24 Total: -61.12 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.07 -9.02 -38.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156240950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.901 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds