Wall clock time and date at job start Wed Apr 1 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47255 * 2 1 4 4 C 1.36943 * 119.99861 * 275.73365 * 3 2 1 5 5 H 1.07997 * 119.99864 * 33.27511 * 4 3 2 6 6 C 1.38816 * 119.99734 * 213.26838 * 4 3 2 7 7 N 1.31617 * 119.99857 * 17.27042 * 6 4 3 8 8 Si 1.86796 * 119.99825 * 197.26395 * 6 4 3 9 9 H 1.48508 * 109.47056 * 60.00274 * 8 6 4 10 10 H 1.48497 * 109.47082 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47461 * 300.00187 * 8 6 4 12 12 C 1.46497 * 120.00258 * 95.72978 * 3 2 1 13 13 H 1.08999 * 109.47390 * 180.08264 * 12 3 2 14 14 C 1.53002 * 109.46907 * 60.08277 * 12 3 2 15 15 C 1.52999 * 109.47116 * 300.08729 * 12 3 2 16 16 N 1.46494 * 109.47251 * 304.99672 * 15 12 3 17 17 C 1.34777 * 120.00355 * 180.02562 * 16 15 12 18 18 O 1.21522 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.48178 * 120.00461 * 179.72596 * 17 16 15 20 20 C 1.39113 * 119.69809 * 180.27091 * 19 17 16 21 21 C 1.39286 * 118.97481 * 179.97438 * 20 19 17 22 22 N 1.39915 * 120.81907 * 179.97438 * 21 20 19 23 23 C 1.36629 * 125.67655 * 359.69638 * 22 21 20 24 24 C 1.34817 * 108.19116 * 179.83351 * 23 22 21 25 25 C 1.40967 * 107.48321 * 0.42083 * 24 23 22 26 26 C 1.34816 * 107.48306 * 359.73992 * 25 24 23 27 27 C 1.39279 * 118.36261 * 0.02562 * 21 20 19 28 28 C 1.38339 * 119.27142 * 359.97438 * 27 21 20 29 29 N 1.31609 * 120.97607 * 359.72921 * 28 27 21 30 30 H 1.09000 * 109.47076 * 60.00374 * 1 2 3 31 31 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46698 * 300.00011 * 1 2 3 33 33 H 1.09004 * 109.47062 * 239.99890 * 2 1 3 34 34 H 1.08998 * 109.46855 * 120.00119 * 2 1 3 35 35 H 0.97008 * 119.99823 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47513 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.47481 * 300.00539 * 14 12 3 38 38 H 1.09007 * 109.46643 * 60.00522 * 14 12 3 39 39 H 1.09000 * 109.47051 * 184.99392 * 15 12 3 40 40 H 1.09000 * 109.47140 * 64.99961 * 15 12 3 41 41 H 0.97004 * 120.00139 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.50754 * 359.97438 * 20 19 17 43 43 H 1.07994 * 125.90131 * 359.97438 * 23 22 21 44 44 H 1.08000 * 126.25404 * 180.20200 * 24 23 22 45 45 H 1.08002 * 126.25927 * 179.70333 * 25 24 23 46 46 H 1.07999 * 125.90487 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.36875 * 179.97438 * 27 21 20 48 48 H 1.07992 * 119.50945 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1502 2.9986 -1.3439 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7149 9 1 1.8243 5.0896 -2.5331 10 1 4.2450 5.1364 -2.6762 11 1 2.9809 3.5679 -4.0256 12 6 2.3820 2.0296 1.2623 13 1 2.7191 3.0470 1.0643 14 6 3.5076 1.2412 1.9349 15 6 1.1630 2.0668 2.1862 16 7 0.0467 2.7174 1.4958 17 6 -1.1386 2.8641 2.1203 18 8 -1.2814 2.4562 3.2561 19 6 -2.2659 3.5275 1.4242 20 6 -3.4848 3.6806 2.0769 21 6 -4.5341 4.3069 1.4086 22 7 -5.7766 4.4807 2.0281 23 6 -6.1002 4.0755 3.2922 24 6 -7.3810 4.4225 3.5304 25 6 -7.8709 5.0562 2.3703 26 6 -6.8698 5.0785 1.4676 27 6 -4.3165 4.7550 0.1079 28 6 -3.0757 4.5660 -0.4739 29 7 -2.1014 3.9756 0.1851 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8968 3.6430 -0.6481 36 1 3.7786 1.7238 2.8739 37 1 3.1706 0.2237 2.1329 38 1 4.3761 1.2147 1.2766 39 1 1.4081 2.6269 3.0886 40 1 0.8801 1.0493 2.4557 41 1 0.1608 3.0433 0.5893 42 1 -3.6154 3.3192 3.0863 43 1 -5.4429 3.5674 3.9821 44 1 -7.9321 4.2440 4.4419 45 1 -8.8663 5.4510 2.2301 46 1 -6.9229 5.4964 0.4732 47 1 -5.1076 5.2446 -0.4404 48 1 -2.9026 4.9124 -1.4820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156240950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:47 Heat of formation + Delta-G solvation = 67.345565 kcal Electronic energy + Delta-G solvation = -29965.031381 eV Core-core repulsion = 26021.446543 eV Total energy + Delta-G solvation = -3943.584838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.79723 -41.41964 -40.06669 -38.56318 -35.51232 -35.00033 -33.70365 -33.01281 -32.45909 -30.78574 -30.00873 -29.88213 -27.54727 -25.78329 -25.26232 -24.78259 -23.35967 -22.36877 -21.24903 -21.07182 -20.82627 -19.81332 -18.72630 -18.09129 -17.54786 -16.97444 -16.73493 -16.59332 -16.46033 -16.21070 -15.75866 -15.68185 -15.31024 -15.00953 -14.69852 -14.54541 -14.48935 -14.32769 -13.97882 -13.72839 -13.50391 -13.30577 -13.17799 -13.08075 -13.02137 -12.76748 -12.71873 -12.51062 -12.41069 -12.08286 -11.86726 -11.63945 -11.42331 -11.36123 -11.17299 -10.72797 -10.50560 -10.39870 -9.94957 -9.44410 -9.29336 -8.50964 -7.79553 -5.29111 -0.60323 -0.26917 1.28502 1.52831 1.55403 1.57986 1.60509 1.75812 2.00335 2.16804 2.57688 2.73857 3.09278 3.35068 3.43465 3.51171 3.66735 3.77474 3.92172 4.13737 4.22039 4.25804 4.38870 4.44248 4.47675 4.53283 4.56456 4.65290 4.66606 4.75731 4.80131 4.86538 4.93519 4.96808 5.05576 5.21544 5.24294 5.26991 5.30735 5.31301 5.44854 5.57659 5.70496 5.77446 5.88235 5.88515 6.10275 6.28552 6.45386 6.53641 6.76360 7.13411 7.27142 7.94761 8.46794 9.24403 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002958 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.505139 B = 9462.133075 C =10530.837312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.058 0.942 6 C -0.032 4.032 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.301 1.301 11 H -0.282 1.282 12 C 0.182 3.818 13 H 0.069 0.931 14 C -0.134 4.134 15 C 0.110 3.890 16 N -0.676 5.676 17 C 0.557 3.443 18 O -0.576 6.576 19 C 0.097 3.903 20 C -0.145 4.145 21 C 0.175 3.825 22 N -0.408 5.408 23 C -0.039 4.039 24 C -0.191 4.191 25 C -0.195 4.195 26 C -0.020 4.020 27 C -0.159 4.159 28 C 0.129 3.871 29 N -0.487 5.487 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.248 0.752 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.418 0.582 42 H 0.148 0.852 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.165 0.835 46 H 0.198 0.802 47 H 0.186 0.814 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.956 4.427 2.908 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.076 0.924 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.227 1.227 11 H -0.208 1.208 12 C 0.074 3.926 13 H 0.087 0.913 14 C -0.193 4.193 15 C -0.016 4.016 16 N -0.324 5.324 17 C 0.342 3.658 18 O -0.457 6.457 19 C -0.040 4.040 20 C -0.168 4.168 21 C 0.074 3.926 22 N -0.081 5.081 23 C -0.164 4.164 24 C -0.215 4.215 25 C -0.219 4.219 26 C -0.144 4.144 27 C -0.181 4.181 28 C -0.031 4.031 29 N -0.199 5.199 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.166 0.834 43 H 0.187 0.813 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.215 0.785 47 H 0.203 0.797 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.777 4.056 3.197 20.440 hybrid contribution -0.196 0.738 -0.488 0.906 sum -19.973 4.793 2.708 20.718 Atomic orbital electron populations 1.22252 0.98447 1.00069 1.00588 1.20824 0.92712 0.86251 0.98777 1.43974 1.76088 1.09143 1.02011 1.19158 1.07732 1.18106 0.93844 0.92441 1.25695 0.94488 1.02913 0.99850 1.70130 1.08307 1.36439 1.41094 0.85595 0.76574 0.79706 0.80024 1.20088 1.22735 1.20806 1.20354 0.89820 0.98066 0.84314 0.91255 1.21876 0.99474 0.98790 0.99203 1.22071 0.87466 0.96571 0.95480 1.45859 1.10284 1.56958 1.19324 1.18167 0.82953 0.79403 0.85282 1.90712 1.83590 1.52496 1.18861 1.20806 0.93144 0.98545 0.91533 1.21676 0.91840 1.00979 1.02310 1.18106 0.84597 0.96561 0.93372 1.41713 1.07965 1.45453 1.13014 1.22335 0.99013 1.07811 0.87193 1.21397 0.94370 1.04760 1.00923 1.21424 1.00400 1.06121 0.93941 1.22562 0.85453 1.04500 1.01905 1.22428 1.00874 1.01892 0.92909 1.23358 0.86905 0.92018 1.00794 1.67676 1.35306 1.09829 1.07106 0.94436 0.92590 0.93938 0.94903 0.93509 0.94285 0.93058 0.93738 0.93178 0.92220 0.92407 0.74381 0.83425 0.81278 0.82376 0.81737 0.78544 0.79663 0.78021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 9.87 71.98 0.71 -4.87 16 2 C 0.14 5.64 5.67 86.38 0.49 6.13 16 3 N -0.59 -26.90 1.85 -678.03 -1.25 -28.16 16 4 C -0.26 -13.03 9.26 84.03 0.78 -12.25 16 5 H 0.06 2.93 7.89 -2.91 -0.02 2.90 16 6 C -0.03 -1.67 4.85 84.86 0.41 -1.26 16 7 N -0.92 -49.78 10.60 21.65 0.23 -49.55 16 8 Si 0.95 42.47 29.59 68.60 2.03 44.50 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.18 7.92 1.92 44.99 0.09 8.01 16 13 H 0.07 3.50 6.04 -2.39 -0.01 3.48 16 14 C -0.13 -5.48 9.05 71.98 0.65 -4.82 16 15 C 0.11 4.28 4.34 86.38 0.37 4.65 16 16 N -0.68 -26.16 3.98 -465.65 -1.85 -28.01 16 17 C 0.56 20.83 7.58 86.88 0.66 21.49 16 18 O -0.58 -23.59 16.32 -3.78 -0.06 -23.65 16 19 C 0.10 3.08 6.75 41.85 0.28 3.37 16 20 C -0.14 -3.92 9.04 22.73 0.21 -3.71 16 21 C 0.18 3.78 6.65 38.35 0.26 4.04 16 22 N -0.41 -8.06 2.97 -346.10 -1.03 -9.09 16 23 C -0.04 -0.77 10.77 83.16 0.90 0.13 16 24 C -0.19 -3.27 10.86 22.15 0.24 -3.03 16 25 C -0.20 -2.94 10.86 22.15 0.24 -2.69 16 26 C -0.02 -0.30 10.77 83.16 0.90 0.60 16 27 C -0.16 -2.64 9.53 22.54 0.21 -2.42 16 28 C 0.13 2.61 11.17 84.75 0.95 3.55 16 29 N -0.49 -14.39 9.54 -185.13 -1.77 -16.15 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 1.60 4.99 -2.39 -0.01 1.58 16 33 H 0.03 1.37 8.09 -2.38 -0.02 1.35 16 34 H 0.05 1.78 6.45 -2.39 -0.02 1.76 16 35 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.65 6.67 -2.39 -0.02 1.64 16 38 H 0.05 2.34 7.40 -2.38 -0.02 2.33 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.25 7.05 -2.39 -0.02 2.23 16 41 H 0.42 17.25 7.22 -92.71 -0.67 16.58 16 42 H 0.15 4.00 6.42 -2.91 -0.02 3.99 16 43 H 0.17 3.10 7.09 -2.91 -0.02 3.08 16 44 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.20 1.53 7.08 -2.91 -0.02 1.51 16 47 H 0.19 1.48 6.83 -2.91 -0.02 1.46 16 48 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -64.05 389.35 4.96 -59.09 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.32 Total: 34.11 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 8.34 Total: 16.90 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -5.67 Total: -130.95 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.05 4.96 -59.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156240950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.439 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds