Wall clock time and date at job start Wed Apr 1 2020 04:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35848 * 126.13258 * 2 1 4 4 N 1.30175 * 108.99835 * 179.81754 * 3 2 1 5 5 C 1.35754 * 108.87061 * 0.44813 * 4 3 2 6 6 C 1.47321 * 126.24087 * 179.72470 * 5 4 3 7 7 O 1.21615 * 120.00467 * 173.66143 * 6 5 4 8 8 N 1.34783 * 119.99577 * 353.65997 * 6 5 4 9 9 C 1.46497 * 119.99966 * 3.93237 * 8 6 5 10 10 C 1.52995 * 109.47049 * 83.42599 * 9 8 6 11 11 N 1.46505 * 109.47474 * 179.97438 * 10 9 8 12 12 C 1.36938 * 120.00385 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99720 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99771 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99942 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47318 * 89.99947 * 16 14 12 18 18 H 1.48507 * 109.46941 * 209.99644 * 16 14 12 19 19 H 1.48496 * 109.47594 * 329.99528 * 16 14 12 20 20 C 1.46497 * 120.00052 * 183.93678 * 8 6 5 21 21 C 1.53006 * 109.47005 * 85.12954 * 20 8 6 22 22 C 1.50703 * 109.46985 * 180.02562 * 21 20 8 23 23 C 1.38231 * 120.00217 * 269.72866 * 22 21 20 24 24 C 1.38236 * 119.99947 * 179.76811 * 23 22 21 25 25 C 1.38230 * 120.00061 * 0.49980 * 24 23 22 26 26 C 1.38234 * 120.00226 * 359.75522 * 25 24 23 27 27 C 1.38238 * 119.99708 * 89.99775 * 22 21 20 28 28 C 1.35379 * 126.13602 * 180.30663 * 2 1 3 29 29 H 1.08997 * 109.47014 * 269.68880 * 1 2 3 30 30 H 1.08994 * 109.46816 * 29.69034 * 1 2 3 31 31 H 1.09001 * 109.46563 * 149.68983 * 1 2 3 32 32 H 1.07999 * 125.49584 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.46958 * 203.42563 * 9 8 6 34 34 H 1.08999 * 109.47403 * 323.42557 * 9 8 6 35 35 H 1.08998 * 109.47264 * 300.00315 * 10 9 8 36 36 H 1.09001 * 109.47220 * 60.00257 * 10 9 8 37 37 H 0.97000 * 119.99797 * 359.97438 * 11 10 9 38 38 H 0.97001 * 119.99622 * 179.97438 * 15 14 12 39 39 H 1.08993 * 109.47403 * 205.13005 * 20 8 6 40 40 H 1.09003 * 109.46703 * 325.13373 * 20 8 6 41 41 H 1.09002 * 109.47032 * 300.00039 * 21 20 8 42 42 H 1.08996 * 109.47292 * 60.00300 * 21 20 8 43 43 H 1.07999 * 119.99470 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.99704 * 180.23174 * 24 23 22 45 45 H 1.07999 * 120.00020 * 179.72564 * 25 24 23 46 46 H 1.07996 * 120.00256 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.00327 * 0.02562 * 27 22 21 48 48 H 1.08005 * 126.56131 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5101 0.7137 0.0039 5 6 3.5512 -0.6432 -0.0035 6 6 4.7653 -1.4777 -0.0079 7 8 4.6735 -2.6854 0.1018 8 7 5.9778 -0.9026 -0.1336 9 6 6.0950 0.5569 -0.1791 10 6 6.1037 1.1125 1.2464 11 7 6.2216 2.5721 1.2010 12 6 6.2506 3.2933 2.3647 13 1 6.1870 2.7860 3.3161 14 6 6.3628 4.6762 2.3217 15 7 6.3902 5.3693 3.4403 16 14 6.4735 5.5534 0.6762 17 1 5.1077 5.8981 0.2061 18 1 7.2721 6.7960 0.8305 19 1 7.1288 4.6639 -0.3160 20 6 7.1784 -1.7371 -0.2248 21 6 7.3948 -2.1621 -1.6787 22 6 8.6295 -3.0211 -1.7724 23 6 9.8608 -2.4383 -2.0075 24 6 10.9940 -3.2258 -2.0887 25 6 10.8945 -4.5970 -1.9450 26 6 9.6626 -5.1803 -1.7151 27 6 8.5300 -4.3924 -1.6287 28 6 2.2634 -1.0933 -0.0059 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 0.8927 -0.5090 31 1 -0.3632 -0.8872 -0.5187 32 1 1.9257 2.1221 -0.0004 33 1 7.0225 0.8314 -0.6817 34 1 5.2487 0.9726 -0.7259 35 1 5.1763 0.8380 1.7490 36 1 6.9501 0.6969 1.7932 37 1 6.2798 3.0277 0.3466 38 1 6.4690 6.3356 3.4101 39 1 8.0425 -1.1695 0.1202 40 1 7.0532 -2.6229 0.3979 41 1 6.5307 -2.7298 -2.0237 42 1 7.5199 -1.2763 -2.3014 43 1 9.9377 -1.3674 -2.1245 44 1 11.9564 -2.7700 -2.2687 45 1 11.7793 -5.2126 -2.0129 46 1 9.5848 -6.2517 -1.6033 47 1 7.5674 -4.8482 -1.4497 48 1 1.9422 -2.1245 -0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162769585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:00 Heat of formation + Delta-G solvation = 83.160711 kcal Electronic energy + Delta-G solvation = -29300.138555 eV Core-core repulsion = 25357.239514 eV Total energy + Delta-G solvation = -3942.899042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -42.15336 -39.70260 -39.03547 -36.17145 -34.63382 -34.15493 -33.02401 -31.23767 -30.97842 -29.85247 -29.04063 -27.63447 -27.11980 -24.40072 -23.56629 -22.65964 -22.13235 -21.24950 -21.23691 -20.85943 -19.09168 -17.74420 -16.98003 -16.93204 -16.36554 -16.05311 -15.79518 -15.27635 -15.20858 -14.78339 -14.36470 -14.19011 -13.95435 -13.64960 -13.57889 -13.44842 -13.43447 -13.28719 -13.05799 -12.96201 -12.85657 -12.74898 -12.47402 -12.12025 -11.43297 -11.30127 -11.14428 -11.11398 -10.94346 -10.76458 -10.69825 -10.09718 -9.99548 -9.75882 -9.52305 -9.48806 -9.01666 -8.90634 -8.75082 -8.63690 -8.24034 -7.07677 -5.66467 -2.99529 1.24095 1.30565 1.64771 2.53328 2.58260 3.22844 3.43899 3.47341 3.51509 3.66623 3.75204 4.42557 4.48757 4.68356 4.73652 4.75229 4.78427 4.82432 4.90736 4.99216 5.04303 5.08449 5.18549 5.29487 5.39542 5.42551 5.48550 5.54845 5.59885 5.68051 5.77956 5.83246 5.93335 5.99689 6.02053 6.02209 6.14926 6.22321 6.36404 6.40925 6.48156 6.57427 6.67505 6.85964 6.91314 7.08859 7.13641 7.60838 7.91508 8.12027 8.43250 8.52922 9.33685 10.06259 10.27895 11.52625 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.007506 B = 0.003538 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.485797 B = 7912.622551 C =11029.703881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.463 5.463 3 C 0.187 3.813 4 N -0.436 5.436 5 C -0.062 4.062 6 C 0.606 3.394 7 O -0.554 6.554 8 N -0.594 5.594 9 C 0.092 3.908 10 C 0.158 3.842 11 N -0.747 5.747 12 C -0.230 4.230 13 H 0.087 0.913 14 C -0.001 4.001 15 N -0.940 5.940 16 Si 0.886 3.114 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.277 1.277 20 C 0.124 3.876 21 C -0.096 4.096 22 C -0.075 4.075 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.114 4.114 28 C 0.026 3.974 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.211 0.789 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.015 0.985 37 H 0.360 0.640 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -18.191 -14.010 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.145 5.145 3 C -0.096 4.096 4 N -0.154 5.154 5 C -0.191 4.191 6 C 0.395 3.605 7 O -0.433 6.433 8 N -0.324 5.324 9 C -0.031 4.031 10 C 0.030 3.970 11 N -0.393 5.393 12 C -0.360 4.360 13 H 0.104 0.896 14 C -0.195 4.195 15 N -0.589 5.589 16 Si 0.717 3.283 17 H -0.212 1.212 18 H -0.221 1.221 19 H -0.203 1.203 20 C 0.001 3.999 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.113 4.113 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.192 0.808 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.919 -18.246 -13.695 23.338 hybrid contribution -0.620 0.459 -0.937 1.214 sum -5.539 -17.786 -14.632 23.688 Atomic orbital electron populations 1.22108 0.76223 1.04802 1.03985 1.45411 1.08041 1.07002 1.54053 1.25459 0.85354 0.93537 1.05298 1.70966 1.18328 1.09563 1.16501 1.20513 0.92850 0.90908 1.14812 1.16960 0.81983 0.86008 0.75549 1.90740 1.86709 1.13913 1.51956 1.47690 1.05495 1.07753 1.71450 1.22257 1.03567 0.77398 0.99867 1.20778 0.98218 0.84615 0.93360 1.42458 1.90365 1.01302 1.05159 1.19043 1.41377 0.89289 0.86281 0.89555 1.24638 1.02600 0.96022 0.96287 1.69714 1.58229 1.06047 1.24909 0.86504 0.77614 0.79273 0.84875 1.21245 1.22069 1.20342 1.21429 0.87084 0.95836 0.95585 1.20989 0.95336 0.99063 0.98019 1.19824 0.94753 0.93987 0.99010 1.21127 0.92128 1.00031 1.00076 1.21145 0.98441 0.93949 1.00247 1.21131 0.97559 0.95074 1.00815 1.21141 0.92759 0.99745 1.00226 1.21135 0.98832 0.93304 0.99891 1.22465 0.90292 0.92955 1.05566 0.90170 0.89100 0.89582 0.77272 0.91565 0.86849 0.94880 0.96734 0.80792 0.93280 0.89959 0.89958 0.90524 0.90728 0.85915 0.86161 0.86365 0.86237 0.85889 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.15 59.85 0.67 1.04 16 2 N -0.46 -4.72 3.13 -125.77 -0.39 -5.11 16 3 C 0.19 2.36 12.55 -89.90 -1.13 1.23 16 4 N -0.44 -7.00 6.53 -11.03 -0.07 -7.07 16 5 C -0.06 -0.96 6.47 -83.09 -0.54 -1.50 16 6 C 0.61 10.15 7.58 -12.56 -0.10 10.06 16 7 O -0.55 -9.99 16.52 5.26 0.09 -9.91 16 8 N -0.59 -9.35 2.50 -175.00 -0.44 -9.79 16 9 C 0.09 1.56 5.08 -4.05 -0.02 1.54 16 10 C 0.16 3.33 6.05 -4.04 -0.02 3.30 16 11 N -0.75 -18.26 5.41 -59.91 -0.32 -18.59 16 12 C -0.23 -6.67 10.47 -15.06 -0.16 -6.83 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 14 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 15 N -0.94 -30.00 13.97 55.49 0.78 -29.22 16 16 Si 0.89 22.31 27.74 -169.99 -4.71 17.59 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 20 C 0.12 1.70 5.34 -4.04 -0.02 1.68 16 21 C -0.10 -1.14 5.64 -27.88 -0.16 -1.30 16 22 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 23 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.13 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 28 C 0.03 0.32 11.27 -16.64 -0.19 0.13 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.21 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 34 H 0.11 1.97 5.31 -51.93 -0.28 1.70 16 35 H 0.03 0.75 7.02 -51.93 -0.36 0.39 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 40 H 0.08 1.20 7.52 -51.93 -0.39 0.81 16 41 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 42 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 48 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -36.71 401.25 -10.46 -47.17 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.17 Total: 9.09 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -4.26 Total: -0.21 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.45 Total: -69.78 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.71 -10.46 -47.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162769585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.331 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds