Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35034 * 124.88655 * 2 1 4 4 C 1.35367 * 107.22688 * 179.72583 * 3 2 1 5 5 C 1.41500 * 105.50527 * 0.41482 * 4 3 2 6 6 C 1.47707 * 126.52150 * 179.84216 * 5 4 3 7 7 O 1.21572 * 119.99737 * 4.44965 * 6 5 4 8 8 N 1.34769 * 120.00525 * 184.45536 * 6 5 4 9 9 C 1.46502 * 119.99820 * 4.43816 * 8 6 5 10 10 C 1.52998 * 109.47085 * 83.30790 * 9 8 6 11 11 N 1.46502 * 109.47085 * 180.02562 * 10 9 8 12 12 C 1.36940 * 119.99805 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99990 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99823 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00208 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47084 * 89.99687 * 16 14 12 18 18 H 1.48495 * 109.47342 * 209.99814 * 16 14 12 19 19 H 1.48501 * 109.47039 * 329.99969 * 16 14 12 20 20 C 1.46496 * 120.00163 * 184.44412 * 8 6 5 21 21 C 1.53005 * 109.47110 * 269.99447 * 20 8 6 22 22 C 1.50698 * 109.47054 * 180.02562 * 21 20 8 23 23 C 1.38236 * 119.99636 * 269.72209 * 22 21 20 24 24 C 1.38239 * 119.99646 * 179.76709 * 23 22 21 25 25 C 1.38232 * 119.99924 * 0.51405 * 24 23 22 26 26 C 1.38230 * 120.00258 * 359.74074 * 25 24 23 27 27 C 1.38232 * 120.00075 * 90.00325 * 22 21 20 28 28 N 1.28468 * 124.88151 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46660 * 269.97226 * 1 2 3 30 30 H 1.08999 * 109.46913 * 29.97135 * 1 2 3 31 31 H 1.09001 * 109.46916 * 149.97591 * 1 2 3 32 32 H 1.07997 * 126.38335 * 0.02562 * 3 2 1 33 33 H 1.08003 * 127.24554 * 180.25996 * 4 3 2 34 34 H 1.08998 * 109.47562 * 203.30727 * 9 8 6 35 35 H 1.08999 * 109.47243 * 323.30571 * 9 8 6 36 36 H 1.09004 * 109.46989 * 299.99634 * 10 9 8 37 37 H 1.08999 * 109.47259 * 59.99791 * 10 9 8 38 38 H 0.96999 * 120.00267 * 0.02562 * 11 10 9 39 39 H 0.96994 * 120.00541 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.47580 * 29.99588 * 20 8 6 41 41 H 1.09004 * 109.47133 * 149.99886 * 20 8 6 42 42 H 1.09002 * 109.46771 * 300.00476 * 21 20 8 43 43 H 1.08999 * 109.46784 * 59.99740 * 21 20 8 44 44 H 1.07999 * 120.00058 * 0.02562 * 23 22 21 45 45 H 1.08000 * 119.99720 * 180.23401 * 24 23 22 46 46 H 1.07999 * 119.99544 * 179.72871 * 25 24 23 47 47 H 1.07997 * 120.00472 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.00476 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4741 -0.7170 0.0000 6 6 4.6272 -1.6400 -0.0001 7 8 5.7574 -1.2007 0.0873 8 7 4.4266 -2.9691 -0.0971 9 6 3.0735 -3.4928 -0.3002 10 6 2.7254 -3.4425 -1.7892 11 7 1.3721 -3.9655 -1.9922 12 6 0.8405 -4.0184 -3.2531 13 1 1.4191 -3.6750 -4.0979 14 6 -0.4415 -4.5145 -3.4455 15 7 -0.9527 -4.5649 -4.6574 16 14 -1.4420 -5.1093 -1.9844 17 1 -2.2303 -3.9789 -1.4312 18 1 -2.3637 -6.1883 -2.4218 19 1 -0.5272 -5.6334 -0.9386 20 6 5.5615 -3.8903 0.0007 21 6 6.1416 -4.1348 -1.3939 22 6 7.3086 -5.0829 -1.2934 23 6 8.5862 -4.5889 -1.1073 24 6 9.6562 -5.4589 -1.0103 25 6 9.4498 -6.8221 -1.1100 26 6 8.1729 -7.3157 -1.3013 27 6 7.1023 -6.4461 -1.3931 28 7 2.1997 -1.0539 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8906 2.1304 0.0004 33 1 4.4109 1.3180 0.0119 34 1 3.0268 -4.5242 0.0492 35 1 2.3615 -2.8868 0.2601 36 1 2.7720 -2.4110 -2.1386 37 1 3.4374 -4.0484 -2.3495 38 1 0.8523 -4.2737 -1.2334 39 1 -1.8487 -4.9112 -4.7918 40 1 6.3282 -3.4556 0.6419 41 1 5.2260 -4.8364 0.4256 42 1 5.3748 -4.5695 -2.0352 43 1 6.4770 -3.1887 -1.8188 44 1 8.7479 -3.5237 -1.0336 45 1 10.6539 -5.0732 -0.8611 46 1 10.2864 -7.5014 -1.0386 47 1 8.0117 -8.3807 -1.3796 48 1 6.1046 -6.8318 -1.5426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163002147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = 100.887530 kcal Electronic energy + Delta-G solvation = -29716.362741 eV Core-core repulsion = 25774.232392 eV Total energy + Delta-G solvation = -3942.130349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.54464 -39.76128 -39.04494 -36.30436 -34.60754 -33.57387 -32.91723 -31.37487 -30.91008 -30.69568 -29.07888 -27.90286 -27.09364 -24.32196 -23.62297 -22.58848 -22.05076 -21.50618 -21.24758 -20.79563 -19.20027 -17.80540 -17.06226 -16.83957 -16.56611 -16.19464 -15.87623 -15.25151 -15.15679 -14.79469 -14.45944 -13.99880 -13.83602 -13.70228 -13.66172 -13.44158 -13.23527 -13.22698 -12.86561 -12.79398 -12.71893 -12.57724 -12.48863 -12.14528 -11.58790 -11.39280 -11.26246 -11.16628 -10.96136 -10.91570 -10.67811 -10.25494 -10.16308 -9.85709 -9.61635 -9.18042 -8.99413 -8.95086 -8.87980 -8.85686 -8.35935 -7.22763 -5.77845 -3.12812 1.30863 1.37142 1.73755 2.21744 2.53663 3.12474 3.31757 3.35998 3.41878 3.59166 3.76633 4.38024 4.56250 4.72729 4.81438 4.83412 4.86063 4.96471 5.06389 5.11024 5.12988 5.31525 5.33208 5.40655 5.48665 5.50065 5.50973 5.55277 5.60299 5.65814 5.74345 5.78578 5.83528 5.85374 5.95322 6.05550 6.07389 6.22766 6.39199 6.44869 6.47103 6.58467 6.65243 6.74194 6.86978 6.96318 6.99333 7.49262 7.98381 8.00591 8.34893 8.40882 9.20401 9.92419 10.13296 11.40813 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008103 B = 0.003803 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.611157 B = 7360.508845 C =10251.622724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.280 5.280 3 C -0.023 4.023 4 C -0.182 4.182 5 C -0.023 4.023 6 C 0.608 3.392 7 O -0.541 6.541 8 N -0.596 5.596 9 C 0.083 3.917 10 C 0.153 3.847 11 N -0.749 5.749 12 C -0.236 4.236 13 H 0.088 0.912 14 C 0.003 3.997 15 N -0.936 5.936 16 Si 0.884 3.116 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.277 1.277 20 C 0.127 3.873 21 C -0.102 4.102 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.115 4.115 28 N -0.237 5.237 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.393 5.231 12.916 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.068 5.068 3 C -0.165 4.165 4 C -0.210 4.210 5 C -0.182 4.182 6 C 0.395 3.605 7 O -0.416 6.416 8 N -0.327 5.327 9 C -0.040 4.040 10 C 0.025 3.975 11 N -0.395 5.395 12 C -0.366 4.366 13 H 0.106 0.894 14 C -0.192 4.192 15 N -0.584 5.584 16 Si 0.715 3.285 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.203 1.203 20 C 0.005 3.995 21 C -0.140 4.140 22 C -0.074 4.074 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.133 4.133 28 N -0.073 5.073 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.196 0.804 33 H 0.176 0.824 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.192 0.808 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.114 4.572 12.728 18.156 hybrid contribution -0.509 0.185 0.700 0.885 sum 11.605 4.758 13.428 18.375 Atomic orbital electron populations 1.22242 0.73100 1.06290 1.04116 1.45602 1.08002 1.03204 1.49974 1.22822 0.91010 0.93768 1.08919 1.21678 0.97154 0.93447 1.08691 1.21834 0.90866 0.93969 1.11534 1.16969 0.86588 0.81134 0.75807 1.90746 1.22901 1.76807 1.51181 1.47730 1.08767 1.05294 1.70931 1.22363 0.82347 1.00054 0.99240 1.20884 0.87200 0.97151 0.92263 1.42504 1.13423 1.77301 1.06281 1.19032 0.97894 1.35012 0.84699 0.89450 1.24649 0.97137 1.01475 0.95981 1.69701 1.16795 1.52471 1.19452 0.86550 0.80371 0.78558 0.83041 1.21260 1.21833 1.20289 1.21446 0.88458 0.93009 0.96610 1.21089 0.95683 0.98954 0.98314 1.19844 0.94595 0.94035 0.98907 1.21144 0.92217 0.99984 0.99887 1.21129 0.98794 0.93527 1.00503 1.21116 0.97031 0.95481 1.01050 1.21143 0.92849 0.99641 1.00189 1.21164 0.99316 0.92838 0.99977 1.73767 1.02721 1.12924 1.17892 0.89939 0.88689 0.87634 0.80409 0.82369 0.90796 0.86968 0.95551 0.95838 0.80767 0.93119 0.89849 0.90298 0.89881 0.90293 0.85899 0.86298 0.86437 0.86205 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.31 59.85 0.68 1.47 16 2 N -0.28 -3.65 3.70 -68.12 -0.25 -3.90 16 3 C -0.02 -0.26 11.46 -17.17 -0.20 -0.45 16 4 C -0.18 -2.47 10.81 -39.36 -0.43 -2.90 16 5 C -0.02 -0.37 6.55 -82.76 -0.54 -0.91 16 6 C 0.61 10.24 7.62 -12.40 -0.09 10.14 16 7 O -0.54 -9.91 16.55 5.30 0.09 -9.82 16 8 N -0.60 -9.13 2.49 -174.86 -0.44 -9.57 16 9 C 0.08 1.35 5.15 -4.04 -0.02 1.33 16 10 C 0.15 3.05 6.21 -4.04 -0.03 3.02 16 11 N -0.75 -17.47 5.41 -59.91 -0.32 -17.79 16 12 C -0.24 -6.61 10.47 -15.06 -0.16 -6.77 16 13 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 14 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 15 N -0.94 -29.04 13.97 55.49 0.78 -28.27 16 16 Si 0.88 21.40 27.74 -169.99 -4.71 16.69 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 20 C 0.13 1.69 5.39 -4.04 -0.02 1.67 16 21 C -0.10 -1.37 5.67 -27.88 -0.16 -1.53 16 22 C -0.07 -0.91 5.13 -104.63 -0.54 -1.44 16 23 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.13 -1.29 10.05 -39.59 -0.40 -1.69 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.11 -1.36 9.70 -39.58 -0.38 -1.74 16 28 N -0.24 -3.75 7.76 33.42 0.26 -3.49 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 35 H 0.11 1.87 5.07 -51.93 -0.26 1.60 16 36 H 0.03 0.58 7.41 -51.93 -0.38 0.19 16 37 H 0.02 0.49 6.75 -51.93 -0.35 0.13 16 38 H 0.36 8.09 5.53 -40.82 -0.23 7.87 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 41 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 42 H 0.08 1.20 6.69 -51.93 -0.35 0.85 16 43 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -34.88 399.04 -9.16 -44.04 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.01 Total: 10.96 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.56 Total: -4.85 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.02 Total: -63.02 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.88 -9.16 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163002147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.931 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds