Wall clock time and date at job start Wed Apr 1 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35034 * 124.88655 * 2 1 4 4 C 1.35367 * 107.22688 * 179.72583 * 3 2 1 5 5 C 1.41500 * 105.50527 * 0.41482 * 4 3 2 6 6 C 1.47707 * 126.52150 * 179.84216 * 5 4 3 7 7 O 1.21572 * 119.99737 * 4.44965 * 6 5 4 8 8 N 1.34769 * 120.00525 * 184.45536 * 6 5 4 9 9 C 1.46502 * 119.99820 * 4.43816 * 8 6 5 10 10 C 1.52998 * 109.47085 * 83.30790 * 9 8 6 11 11 N 1.46502 * 109.47085 * 180.02562 * 10 9 8 12 12 C 1.36940 * 119.99805 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99990 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99823 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00208 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47084 * 89.99687 * 16 14 12 18 18 H 1.48495 * 109.47342 * 209.99814 * 16 14 12 19 19 H 1.48501 * 109.47039 * 329.99969 * 16 14 12 20 20 C 1.46496 * 120.00163 * 184.44412 * 8 6 5 21 21 C 1.53005 * 109.47110 * 269.99447 * 20 8 6 22 22 C 1.50698 * 109.47054 * 180.02562 * 21 20 8 23 23 C 1.38236 * 119.99636 * 269.72209 * 22 21 20 24 24 C 1.38239 * 119.99646 * 179.76709 * 23 22 21 25 25 C 1.38232 * 119.99924 * 0.51405 * 24 23 22 26 26 C 1.38230 * 120.00258 * 359.74074 * 25 24 23 27 27 C 1.38232 * 120.00075 * 90.00325 * 22 21 20 28 28 N 1.28468 * 124.88151 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46660 * 269.97226 * 1 2 3 30 30 H 1.08999 * 109.46913 * 29.97135 * 1 2 3 31 31 H 1.09001 * 109.46916 * 149.97591 * 1 2 3 32 32 H 1.07997 * 126.38335 * 0.02562 * 3 2 1 33 33 H 1.08003 * 127.24554 * 180.25996 * 4 3 2 34 34 H 1.08998 * 109.47562 * 203.30727 * 9 8 6 35 35 H 1.08999 * 109.47243 * 323.30571 * 9 8 6 36 36 H 1.09004 * 109.46989 * 299.99634 * 10 9 8 37 37 H 1.08999 * 109.47259 * 59.99791 * 10 9 8 38 38 H 0.96999 * 120.00267 * 0.02562 * 11 10 9 39 39 H 0.96994 * 120.00541 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.47580 * 29.99588 * 20 8 6 41 41 H 1.09004 * 109.47133 * 149.99886 * 20 8 6 42 42 H 1.09002 * 109.46771 * 300.00476 * 21 20 8 43 43 H 1.08999 * 109.46784 * 59.99740 * 21 20 8 44 44 H 1.07999 * 120.00058 * 0.02562 * 23 22 21 45 45 H 1.08000 * 119.99720 * 180.23401 * 24 23 22 46 46 H 1.07999 * 119.99544 * 179.72871 * 25 24 23 47 47 H 1.07997 * 120.00472 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.00476 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4741 -0.7170 0.0000 6 6 4.6272 -1.6400 -0.0001 7 8 5.7574 -1.2007 0.0873 8 7 4.4266 -2.9691 -0.0971 9 6 3.0735 -3.4928 -0.3002 10 6 2.7254 -3.4425 -1.7892 11 7 1.3721 -3.9655 -1.9922 12 6 0.8405 -4.0184 -3.2531 13 1 1.4191 -3.6750 -4.0979 14 6 -0.4415 -4.5145 -3.4455 15 7 -0.9527 -4.5649 -4.6574 16 14 -1.4420 -5.1093 -1.9844 17 1 -2.2303 -3.9789 -1.4312 18 1 -2.3637 -6.1883 -2.4218 19 1 -0.5272 -5.6334 -0.9386 20 6 5.5615 -3.8903 0.0007 21 6 6.1416 -4.1348 -1.3939 22 6 7.3086 -5.0829 -1.2934 23 6 8.5862 -4.5889 -1.1073 24 6 9.6562 -5.4589 -1.0103 25 6 9.4498 -6.8221 -1.1100 26 6 8.1729 -7.3157 -1.3013 27 6 7.1023 -6.4461 -1.3931 28 7 2.1997 -1.0539 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8906 2.1304 0.0004 33 1 4.4109 1.3180 0.0119 34 1 3.0268 -4.5242 0.0492 35 1 2.3615 -2.8868 0.2601 36 1 2.7720 -2.4110 -2.1386 37 1 3.4374 -4.0484 -2.3495 38 1 0.8523 -4.2737 -1.2334 39 1 -1.8487 -4.9112 -4.7918 40 1 6.3282 -3.4556 0.6419 41 1 5.2260 -4.8364 0.4256 42 1 5.3748 -4.5695 -2.0352 43 1 6.4770 -3.1887 -1.8188 44 1 8.7479 -3.5237 -1.0336 45 1 10.6539 -5.0732 -0.8611 46 1 10.2864 -7.5014 -1.0386 47 1 8.0117 -8.3807 -1.3796 48 1 6.1046 -6.8318 -1.5426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163002147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:13 Heat of formation + Delta-G solvation = 79.978173 kcal Electronic energy + Delta-G solvation = -29717.269439 eV Core-core repulsion = 25774.232392 eV Total energy + Delta-G solvation = -3943.037047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.57283 -40.94093 -40.00559 -37.76909 -36.27781 -34.70111 -33.99782 -33.34305 -31.75210 -31.70629 -30.30828 -29.34464 -28.08198 -25.53310 -25.27704 -23.43830 -23.35018 -22.96878 -22.31466 -21.80336 -20.46844 -19.67918 -18.25202 -17.88557 -17.59088 -17.26611 -17.01395 -16.53082 -16.25530 -16.14740 -15.85776 -15.45758 -15.33192 -15.05857 -14.72668 -14.65319 -14.35224 -14.23740 -14.14698 -13.94497 -13.76655 -13.54244 -13.40818 -13.31611 -13.17059 -13.03721 -12.71631 -12.63372 -12.14743 -12.07988 -11.95289 -11.81532 -11.71988 -11.47060 -11.16792 -10.91958 -10.20264 -10.06254 -9.88240 -9.80507 -9.46390 -9.30139 -8.01253 -5.36090 0.42804 0.51638 0.57313 1.25854 1.39645 1.43894 1.52230 1.59898 1.96326 2.37150 2.50188 2.89528 3.26935 3.29809 3.68622 3.80833 3.90082 3.98425 4.04865 4.09561 4.14616 4.19745 4.23166 4.32558 4.37816 4.41179 4.45424 4.47694 4.59838 4.64303 4.66993 4.72403 4.79379 4.80545 4.88201 4.90587 5.05740 5.12430 5.19863 5.23324 5.40420 5.56871 5.61919 5.64115 5.73887 5.75036 5.98161 6.14318 6.19112 6.24087 6.87115 7.07619 7.13751 7.80691 8.05014 9.20531 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008103 B = 0.003803 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.611157 B = 7360.508845 C =10251.622724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.283 5.283 3 C -0.001 4.001 4 C -0.203 4.203 5 C -0.053 4.053 6 C 0.602 3.398 7 O -0.564 6.564 8 N -0.593 5.593 9 C 0.098 3.902 10 C 0.163 3.837 11 N -0.744 5.744 12 C -0.233 4.233 13 H 0.044 0.956 14 C -0.060 4.060 15 N -0.986 5.986 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.299 1.299 19 H -0.249 1.249 20 C 0.128 3.872 21 C -0.091 4.091 22 C -0.088 4.088 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.129 4.129 28 N -0.264 5.264 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.005 0.995 37 H 0.015 0.985 38 H 0.369 0.631 39 H 0.258 0.742 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 5.032 15.469 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.071 5.071 3 C -0.143 4.143 4 C -0.231 4.231 5 C -0.211 4.211 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.323 5.323 9 C -0.026 4.026 10 C 0.035 3.965 11 N -0.390 5.390 12 C -0.364 4.364 13 H 0.062 0.938 14 C -0.251 4.251 15 N -0.636 5.636 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.226 1.226 19 H -0.173 1.173 20 C 0.006 3.994 21 C -0.129 4.129 22 C -0.088 4.088 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.147 4.147 28 N -0.102 5.102 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.243 0.757 33 H 0.184 0.816 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.023 0.977 37 H 0.033 0.967 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.159 0.841 46 H 0.163 0.837 47 H 0.158 0.842 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.948 4.372 15.314 19.909 hybrid contribution -0.388 0.324 -0.200 0.543 sum 11.560 4.696 15.114 19.599 Atomic orbital electron populations 1.22542 0.71217 1.06558 1.05992 1.45992 1.09155 1.03141 1.48796 1.23473 0.89847 0.95122 1.05906 1.21959 0.98790 0.92612 1.09761 1.21926 0.90900 0.95030 1.13213 1.17257 0.86739 0.81646 0.75362 1.90713 1.23834 1.77227 1.52440 1.47748 1.08917 1.05280 1.70372 1.22157 0.82910 1.01321 0.96174 1.20837 0.85383 0.95264 0.95031 1.42342 1.14589 1.77287 1.04770 1.18887 0.97770 1.34309 0.85398 0.93804 1.25511 0.98363 1.01938 0.99331 1.69904 1.17304 1.53952 1.22447 0.85366 0.78614 0.78100 0.79452 1.19459 1.22556 1.17341 1.21568 0.87897 0.93390 0.96523 1.20903 0.95840 0.98191 0.97978 1.19778 0.94410 0.94194 1.00439 1.21250 0.92513 1.00327 1.00573 1.21430 0.99368 0.93733 0.99613 1.21484 0.97672 0.95747 0.99688 1.21441 0.92741 1.00580 0.99438 1.21274 1.00024 0.92748 1.00622 1.73640 1.02794 1.14559 1.19203 0.87268 0.85548 0.90224 0.75743 0.81640 0.88752 0.86661 0.97736 0.96700 0.79744 0.93275 0.90001 0.88273 0.91414 0.92310 0.86138 0.84061 0.83690 0.84154 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 11.31 127.77 1.44 2.71 16 2 N -0.28 -6.87 3.70 -369.44 -1.37 -8.24 16 3 C 0.00 -0.01 11.46 83.54 0.96 0.94 16 4 C -0.20 -5.40 10.81 22.41 0.24 -5.15 16 5 C -0.05 -1.71 6.55 42.45 0.28 -1.43 16 6 C 0.60 20.82 7.62 86.75 0.66 21.48 16 7 O -0.56 -21.44 16.55 -3.94 -0.07 -21.50 16 8 N -0.59 -18.41 2.49 -825.39 -2.05 -20.47 16 9 C 0.10 3.14 5.15 86.38 0.44 3.58 16 10 C 0.16 6.61 6.21 86.38 0.54 7.14 16 11 N -0.74 -34.65 5.41 -343.45 -1.86 -36.50 16 12 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 13 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 14 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 15 N -0.99 -62.69 13.97 21.65 0.30 -62.39 16 16 Si 0.96 43.57 27.74 68.60 1.90 45.48 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.25 -10.10 6.52 99.48 0.65 -9.45 16 20 C 0.13 3.44 5.39 86.38 0.47 3.91 16 21 C -0.09 -2.55 5.67 29.85 0.17 -2.38 16 22 C -0.09 -2.21 5.13 -19.87 -0.10 -2.31 16 23 C -0.13 -3.01 9.70 22.27 0.22 -2.80 16 24 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 27 C -0.13 -2.99 9.70 22.27 0.22 -2.78 16 28 N -0.26 -8.26 7.76 -48.18 -0.37 -8.63 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.13 1.28 8.13 -2.39 -0.02 1.27 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.09 2.64 7.82 -2.39 -0.02 2.63 16 35 H 0.12 3.75 5.07 -2.39 -0.01 3.73 16 36 H 0.00 0.21 7.41 -2.39 -0.02 0.19 16 37 H 0.02 0.64 6.75 -2.39 -0.02 0.62 16 38 H 0.37 15.93 5.53 -92.71 -0.51 15.42 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.08 2.25 7.49 -2.39 -0.02 2.23 16 41 H 0.10 2.25 7.85 -2.38 -0.02 2.23 16 42 H 0.07 2.07 6.69 -2.39 -0.02 2.06 16 43 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 44 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 47 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -78.90 399.04 4.43 -74.46 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.40 Total: 36.79 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 7.55 Total: 0.99 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -5.35 Total: -136.23 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Total: -78.90 4.43 -74.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163002147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.441 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds