Wall clock time and date at job start Wed Apr 1 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.46708 * 2 1 4 4 C 1.46906 * 111.00394 * 293.55984 * 3 2 1 5 5 C 1.50696 * 109.46922 * 288.55668 * 4 3 2 6 6 H 1.08000 * 120.00377 * 4.62013 * 5 4 3 7 7 C 1.37883 * 119.99612 * 184.62020 * 5 4 3 8 8 N 1.31512 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99707 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47435 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47119 * 119.99946 * 9 7 5 12 12 H 1.48506 * 109.46517 * 239.99735 * 9 7 5 13 13 C 1.38691 * 111.00073 * 57.51329 * 3 2 1 14 14 N 1.31678 * 119.80366 * 255.41423 * 13 3 2 15 15 C 1.34110 * 119.79496 * 179.97438 * 14 13 3 16 16 C 1.40414 * 120.85819 * 179.97438 * 15 14 13 17 17 C 1.36212 * 119.76219 * 179.97438 * 16 15 14 18 18 C 1.39235 * 120.89864 * 0.05077 * 17 16 15 19 19 C 1.36218 * 120.90177 * 359.94541 * 18 17 16 20 20 C 1.40416 * 119.75658 * 0.02856 * 19 18 17 21 21 N 1.34113 * 120.85330 * 179.72214 * 20 19 18 22 22 C 1.31685 * 119.78778 * 179.77011 * 21 20 19 23 23 N 1.38691 * 119.79469 * 180.28012 * 22 21 20 24 24 C 1.47013 * 111.00412 * 59.09824 * 23 22 21 25 25 C 1.53093 * 109.25809 * 177.60995 * 24 23 22 26 26 O 1.43016 * 109.26344 * 56.84371 * 25 24 23 27 27 C 1.43012 * 113.73852 * 301.33346 * 26 25 24 28 28 C 1.47016 * 110.99719 * 295.45479 * 23 22 21 29 29 H 1.08996 * 109.47340 * 65.30164 * 1 2 3 30 30 H 1.09004 * 109.46748 * 185.29474 * 1 2 3 31 31 H 1.08997 * 109.47285 * 305.29163 * 1 2 3 32 32 H 1.09003 * 109.46785 * 240.00670 * 2 1 3 33 33 H 1.08995 * 109.47206 * 120.00379 * 2 1 3 34 34 H 1.09001 * 109.46735 * 48.55365 * 4 3 2 35 35 H 1.08996 * 109.47044 * 168.55072 * 4 3 2 36 36 H 0.97000 * 119.99731 * 179.97438 * 8 7 5 37 37 H 1.08004 * 120.11711 * 0.02562 * 16 15 14 38 38 H 1.08001 * 119.55143 * 180.02562 * 17 16 15 39 39 H 1.07995 * 119.55251 * 179.97438 * 18 17 16 40 40 H 1.07993 * 120.12254 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.50054 * 297.53993 * 24 23 22 42 42 H 1.08997 * 109.50790 * 57.66560 * 24 23 22 43 43 H 1.09004 * 109.50314 * 296.91264 * 25 24 23 44 44 H 1.08999 * 109.54443 * 176.80338 * 25 24 23 45 45 H 1.09003 * 109.50465 * 298.73338 * 27 26 25 46 46 H 1.09001 * 109.54840 * 178.62288 * 27 26 25 47 47 H 1.08993 * 109.51166 * 302.33277 * 28 23 22 48 48 H 1.09002 * 109.50027 * 62.46408 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6782 2.0641 -1.2571 5 6 2.5238 1.5085 -2.3739 6 1 3.1890 0.6786 -2.1861 7 6 2.4483 2.0596 -3.6355 8 7 1.6380 3.0699 -3.8643 9 14 3.4960 1.3704 -5.0200 10 1 4.3159 0.2438 -4.5066 11 1 2.6153 0.8847 -6.1125 12 1 4.3901 2.4354 -5.5413 13 6 1.5296 2.0854 1.0922 14 7 0.5606 2.9616 0.9267 15 6 0.0866 3.6383 1.9830 16 6 -0.9457 4.5781 1.8319 17 6 -1.4107 5.2525 2.9202 18 6 -0.8754 5.0245 4.1852 19 6 0.1266 4.1201 4.3681 20 6 0.6303 3.4061 3.2689 21 7 1.6203 2.5145 3.4230 22 6 2.0736 1.8533 2.3783 23 7 3.0934 0.9271 2.5385 24 6 2.7004 -0.1320 3.4793 25 6 3.8287 -1.1618 3.5805 26 8 5.0340 -0.5033 3.9791 27 6 5.4464 0.5338 3.0849 28 6 4.3345 1.5808 2.9786 29 1 -0.3634 0.4294 -0.9336 30 1 -0.3633 -1.0233 0.0948 31 1 -0.3634 0.5937 0.8388 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.6245 1.9011 -1.4836 35 1 1.8669 3.1328 -1.1556 36 1 1.5852 3.4578 -4.7517 37 1 -1.3701 4.7649 0.8565 38 1 -2.2051 5.9743 2.8002 39 1 -1.2602 5.5717 5.0330 40 1 0.5323 3.9528 5.3549 41 1 2.5161 0.3036 4.4613 42 1 1.7938 -0.6194 3.1207 43 1 3.9769 -1.6358 2.6102 44 1 3.5662 -1.9190 4.3192 45 1 5.6415 0.1089 2.1002 46 1 6.3536 1.0036 3.4648 47 1 4.6207 2.3435 2.2546 48 1 4.1762 2.0437 3.9526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:18 Heat of formation + Delta-G solvation = 39.657407 kcal Electronic energy + Delta-G solvation = -31216.117511 eV Core-core repulsion = 27271.332024 eV Total energy + Delta-G solvation = -3944.785487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.74387 -40.59595 -39.64147 -37.98707 -36.54952 -35.08244 -34.63473 -32.24675 -31.80419 -31.32536 -30.74663 -28.66813 -28.21529 -25.59480 -25.12918 -24.93594 -24.17944 -23.18646 -22.22092 -21.47890 -19.43957 -19.36731 -18.50129 -17.95601 -17.37335 -17.15367 -16.88906 -16.49397 -16.37062 -16.11681 -15.96812 -15.77758 -15.39784 -15.32868 -15.03796 -14.94820 -14.78946 -14.32940 -13.79766 -13.48530 -13.27952 -13.07695 -12.96980 -12.85027 -12.82494 -12.73494 -12.63116 -12.52876 -12.49960 -12.35422 -12.27990 -12.01868 -11.80149 -11.62714 -11.36266 -10.90507 -10.64638 -10.37724 -10.15215 -9.63598 -9.58899 -8.96726 -8.18436 -6.29592 -0.80996 -0.45642 0.88755 1.42139 1.42900 1.56669 1.73978 2.20675 2.40393 2.78125 2.91670 2.96716 3.12099 3.14955 3.26569 3.47396 3.86719 3.93441 3.98082 4.01587 4.10922 4.12611 4.20555 4.23264 4.26732 4.34668 4.35508 4.47531 4.49715 4.55918 4.67890 4.77749 4.82341 4.87249 4.92399 4.94280 5.00916 5.08583 5.13478 5.18375 5.28039 5.36393 5.39603 5.62820 5.67946 5.69716 5.88393 6.00489 6.05483 6.15197 6.23454 6.58231 6.74315 6.90615 7.39231 8.92894 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.005001 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.456284 B = 5597.377415 C = 8140.895976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 N -0.460 5.460 4 C 0.226 3.774 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.971 3.029 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.316 3.684 14 N -0.499 5.499 15 C 0.076 3.924 16 C -0.118 4.118 17 C -0.076 4.076 18 C -0.096 4.096 19 C -0.085 4.085 20 C 0.042 3.958 21 N -0.451 5.451 22 C 0.278 3.722 23 N -0.469 5.469 24 C 0.024 3.976 25 C 0.069 3.931 26 O -0.394 6.394 27 C 0.074 3.926 28 C 0.031 3.969 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.096 0.904 34 H -0.015 1.015 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -2.978 19.485 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.051 4.051 3 N -0.177 5.177 4 C 0.101 3.899 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.065 3.935 14 N -0.219 5.219 15 C -0.048 4.048 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.083 4.083 21 N -0.168 5.168 22 C 0.027 3.973 23 N -0.194 5.194 24 C -0.103 4.103 25 C -0.007 4.007 26 O -0.313 6.313 27 C -0.003 4.003 28 C -0.097 4.097 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.003 0.997 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.170 0.830 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.144 0.856 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.159 -3.051 19.151 19.427 hybrid contribution -0.769 0.780 -1.094 1.548 sum -1.928 -2.271 18.057 18.301 Atomic orbital electron populations 1.22281 0.97809 1.02509 1.00249 1.22112 0.92604 0.86450 1.03918 1.59497 1.53084 1.03723 1.01437 1.19218 0.94099 0.92162 0.84464 1.21490 1.23779 1.17049 0.93754 0.91191 1.25911 0.96879 0.95174 1.01514 1.70143 1.39207 1.25357 1.22750 0.85314 0.78367 0.78512 0.78301 1.18099 1.20430 1.20837 1.21173 0.87897 0.92521 0.91906 1.69065 1.09828 1.09927 1.33107 1.19977 0.98097 0.97414 0.89327 1.20993 0.95951 0.95586 1.01244 1.21417 0.99130 0.97743 0.91301 1.21408 0.94824 0.96715 0.98576 1.21036 0.96912 0.95285 0.97216 1.19755 0.95966 0.98004 0.94579 1.68701 1.10150 1.05663 1.32305 1.20522 0.94290 0.94166 0.88361 1.60170 1.01084 1.09687 1.48412 1.22918 1.00338 0.92870 0.94151 1.22793 0.82289 0.93321 1.02341 1.87950 1.42281 1.50692 1.50344 1.22696 0.95686 0.87185 0.94763 1.22801 0.89513 0.97975 0.99362 0.94328 0.89240 0.95240 0.89582 0.88603 0.99688 0.99162 0.92833 0.85474 0.81127 0.80425 0.82952 0.93212 0.89630 0.91470 0.85583 0.91785 0.85994 0.91034 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.26 9.33 71.98 0.67 -5.59 16 2 C 0.07 2.85 5.77 86.31 0.50 3.35 16 3 N -0.46 -20.98 4.39 -704.60 -3.10 -24.07 16 4 C 0.23 12.58 3.81 85.55 0.33 12.91 16 5 C -0.52 -29.78 8.57 25.60 0.22 -29.56 16 6 H 0.07 3.83 7.35 -2.91 -0.02 3.81 16 7 C 0.00 0.19 5.46 84.66 0.46 0.65 16 8 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.32 13.62 4.49 133.99 0.60 14.23 16 14 N -0.50 -22.51 8.60 -185.11 -1.59 -24.10 16 15 C 0.08 2.89 6.58 40.14 0.26 3.15 16 16 C -0.12 -3.61 9.97 22.33 0.22 -3.39 16 17 C -0.08 -1.54 9.95 22.04 0.22 -1.33 16 18 C -0.10 -1.68 9.95 22.04 0.22 -1.46 16 19 C -0.09 -2.02 9.98 22.33 0.22 -1.79 16 20 C 0.04 1.40 6.58 40.14 0.26 1.66 16 21 N -0.45 -15.61 9.69 -185.10 -1.79 -17.41 16 22 C 0.28 10.18 5.21 133.99 0.70 10.88 16 23 N -0.47 -14.57 3.48 -699.32 -2.43 -17.00 16 24 C 0.02 0.60 5.06 86.31 0.44 1.04 16 25 C 0.07 1.40 7.01 72.01 0.50 1.90 16 26 O -0.39 -9.26 10.83 -148.98 -1.61 -10.87 16 27 C 0.07 1.68 7.01 72.02 0.50 2.18 16 28 C 0.03 0.87 5.50 86.31 0.48 1.34 16 29 H 0.04 1.65 6.59 -2.39 -0.02 1.64 16 30 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.03 1.12 6.69 -2.39 -0.02 1.11 16 32 H 0.09 3.42 7.02 -2.39 -0.02 3.40 16 33 H 0.10 3.13 6.27 -2.39 -0.01 3.11 16 34 H -0.01 -0.88 6.16 -2.39 -0.01 -0.90 16 35 H -0.01 -0.63 7.70 -2.39 -0.02 -0.65 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.05 1.30 7.89 -2.39 -0.02 1.28 16 42 H 0.09 2.05 7.65 -2.39 -0.02 2.04 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 46 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 1.40 7.99 -2.39 -0.02 1.38 16 Total: -1.00 -75.17 382.09 -0.44 -75.61 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.97 Total: 18.51 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.81 Total: 10.19 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -8.63 Total: -139.92 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.61 Total: -10.87 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.17 -0.44 -75.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.267 kcal (2) G-P(sol) polarization free energy of solvation -75.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds