Wall clock time and date at job start Wed Apr 1 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46871 * 2 1 4 4 C 1.42901 * 113.99826 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47299 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47087 * 65.00071 * 5 4 3 7 7 C 1.42896 * 113.99899 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46856 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00098 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99698 * 180.02562 * 8 7 6 11 11 C 1.46987 * 120.72256 * 359.97438 * 10 8 7 12 12 C 1.53152 * 108.43399 * 125.47456 * 11 10 8 13 13 C 1.52504 * 109.80033 * 54.53761 * 12 11 10 14 14 H 1.08999 * 108.93900 * 180.99202 * 13 12 11 15 15 O 1.42685 * 110.61408 * 61.28613 * 13 12 11 16 16 C 1.43074 * 113.88024 * 174.66674 * 15 13 12 17 17 C 1.53235 * 109.44711 * 61.64427 * 16 15 13 18 18 N 1.47177 * 108.68709 * 308.40872 * 17 16 15 19 19 C 1.36943 * 121.22228 * 230.96085 * 18 17 16 20 20 H 1.07999 * 119.99697 * 153.95863 * 19 18 17 21 21 C 1.38808 * 119.99948 * 334.23579 * 19 18 17 22 22 N 1.31617 * 119.99723 * 159.14068 * 21 19 18 23 23 Si 1.86800 * 120.00220 * 339.13733 * 21 19 18 24 24 H 1.48493 * 109.47287 * 92.08288 * 23 21 19 25 25 H 1.48502 * 109.47438 * 212.08715 * 23 21 19 26 26 H 1.48506 * 109.47109 * 332.08444 * 23 21 19 27 27 C 1.47595 * 117.55070 * 51.23664 * 18 17 16 28 28 H 1.08999 * 110.31117 * 187.41298 * 27 18 17 29 29 C 1.46786 * 120.71892 * 180.02562 * 10 8 7 30 30 H 1.08994 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46883 * 300.00028 * 1 2 3 32 32 H 1.09002 * 109.46848 * 59.99381 * 1 2 3 33 33 H 1.08997 * 109.47008 * 240.00512 * 2 1 3 34 34 H 1.08995 * 109.47089 * 120.00290 * 2 1 3 35 35 H 1.08997 * 109.47109 * 60.00406 * 4 3 2 36 36 H 1.09004 * 109.47395 * 300.00188 * 4 3 2 37 37 H 1.09002 * 109.47031 * 305.00251 * 5 4 3 38 38 H 1.08999 * 109.47107 * 184.99568 * 5 4 3 39 39 H 1.08997 * 109.47083 * 59.99947 * 7 6 5 40 40 H 1.09004 * 109.47049 * 299.99426 * 7 6 5 41 41 H 1.08995 * 109.64326 * 5.78828 * 11 10 8 42 42 H 1.09003 * 109.81667 * 245.25693 * 11 10 8 43 43 H 1.09006 * 109.41588 * 294.43543 * 12 11 10 44 44 H 1.09002 * 109.41636 * 174.64433 * 12 11 10 45 45 H 1.08999 * 109.47101 * 301.64950 * 16 15 13 46 46 H 1.08998 * 109.47815 * 181.63961 * 16 15 13 47 47 H 1.09000 * 109.59895 * 188.65366 * 17 16 15 48 48 H 1.08999 * 109.73441 * 68.25025 * 17 16 15 49 49 H 0.97008 * 119.99590 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.52166 * 354.17643 * 29 10 8 51 51 H 1.08999 * 109.52226 * 114.29639 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3987 3.5448 1.2218 7 6 3.7195 4.9334 1.3245 8 6 3.2264 5.4666 2.6449 9 8 2.6559 4.7299 3.4214 10 7 3.4184 6.7623 2.9625 11 6 4.1072 7.6691 2.0332 12 6 3.2023 8.8777 1.7759 13 6 2.8089 9.5201 3.1019 14 1 2.1517 10.3668 2.9036 15 8 3.9648 9.9843 3.7977 16 6 3.6680 10.7075 4.9961 17 6 2.9273 9.7904 5.9751 18 7 1.7872 9.1764 5.2755 19 6 0.5252 9.2142 5.8057 20 1 -0.3355 9.1594 5.1555 21 6 0.3521 9.3287 7.1782 22 7 -0.7890 9.7706 7.6629 23 14 1.7385 8.8555 8.3372 24 1 2.5641 10.0530 8.6363 25 1 1.1677 8.3199 9.5992 26 1 2.5859 7.8173 7.6974 27 6 2.0554 8.5130 3.9846 28 1 1.1199 8.2173 3.5097 29 6 2.9451 7.2981 4.2445 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9768 -0.8908 36 1 3.8341 0.9765 0.8892 37 1 3.3492 3.4420 -0.8412 38 1 4.9082 3.0255 -0.0898 39 1 3.2407 5.4781 0.5107 40 1 4.8001 5.0623 1.2618 41 1 4.3034 7.1517 1.0942 42 1 5.0480 8.0025 2.4714 43 1 2.3045 8.5527 1.2501 44 1 3.7354 9.6058 1.1645 45 1 3.0404 11.5659 4.7564 46 1 4.5961 11.0519 5.4521 47 1 2.5654 10.3749 6.8210 48 1 3.6010 9.0109 6.3307 49 1 -0.9101 9.8503 8.6221 50 1 2.3711 6.5342 4.7690 51 1 3.7995 7.5938 4.8534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177157527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:58 Heat of formation + Delta-G solvation = -127.863449 kcal Electronic energy + Delta-G solvation = -31519.476105 eV Core-core repulsion = 27227.824699 eV Total energy + Delta-G solvation = -4291.651407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.31148 -39.04157 -38.40062 -37.20865 -35.84976 -34.88880 -32.20210 -31.91001 -31.76139 -30.33241 -29.65709 -28.17729 -27.05116 -24.71493 -23.76340 -23.11153 -23.00734 -22.80954 -21.62495 -19.74791 -18.52149 -17.56580 -17.19444 -17.01716 -16.80138 -16.15916 -16.03937 -15.74142 -15.58893 -15.49691 -15.10685 -14.77724 -14.39551 -14.18140 -14.11843 -13.66466 -13.51376 -13.32777 -13.02284 -12.72751 -12.67411 -12.58076 -12.40128 -12.23949 -12.10951 -11.76955 -11.70952 -11.51479 -11.47403 -11.20646 -11.15735 -11.01349 -10.63095 -10.34951 -10.18465 -9.90662 -9.83340 -9.82134 -9.59826 -9.47977 -9.37611 -8.59765 -8.39112 -7.05717 -6.01184 -3.38586 2.76163 2.80798 3.26379 3.41141 3.46710 3.49154 3.71925 4.10891 4.46701 4.53238 4.64511 4.72411 4.81219 4.85945 4.89675 4.95083 4.99414 5.03392 5.06733 5.11765 5.12462 5.16154 5.22002 5.30590 5.39680 5.47417 5.52135 5.58205 5.59527 5.69956 5.77717 5.80402 5.83109 5.93440 5.96440 5.99594 6.10112 6.18752 6.35793 6.49330 6.52035 6.66422 6.72520 6.89168 7.01153 7.60243 7.62086 7.80193 8.24461 8.39672 8.81082 9.62222 9.96644 11.14298 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.002745 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.262222 B =10196.293311 C =11486.335980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.047 3.953 8 C 0.511 3.489 9 O -0.518 6.518 10 N -0.607 5.607 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.078 3.922 14 H 0.059 0.941 15 O -0.383 6.383 16 C 0.051 3.949 17 C 0.087 3.913 18 N -0.598 5.598 19 C -0.261 4.261 20 H 0.089 0.911 21 C 0.027 3.973 22 N -0.904 5.904 23 Si 0.881 3.119 24 H -0.288 1.288 25 H -0.301 1.301 26 H -0.269 1.269 27 C 0.138 3.862 28 H 0.086 0.914 29 C 0.104 3.896 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.264 0.736 50 H 0.091 0.909 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.882 -10.382 -19.334 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.033 4.033 8 C 0.298 3.702 9 O -0.392 6.392 10 N -0.343 5.343 11 C -0.012 4.012 12 C -0.162 4.162 13 C 0.019 3.981 14 H 0.077 0.923 15 O -0.303 6.303 16 C -0.027 4.027 17 C -0.038 4.038 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.107 0.893 21 C -0.172 4.172 22 N -0.546 5.546 23 Si 0.711 3.289 24 H -0.216 1.216 25 H -0.229 1.229 26 H -0.194 1.194 27 C 0.030 3.970 28 H 0.104 0.896 29 C -0.020 4.020 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.373 -10.731 -18.647 24.819 hybrid contribution 0.840 -0.185 0.740 1.135 sum 13.213 -10.916 -17.907 24.787 Atomic orbital electron populations 1.21742 0.93638 1.02118 1.03472 1.22456 0.95866 0.83819 0.99774 1.88002 1.20280 1.26220 1.95341 1.22475 0.82518 0.95349 1.00799 1.22580 0.98263 0.92937 0.87727 1.88110 1.80747 1.20902 1.37427 1.22255 1.00136 0.84278 0.96644 1.20147 0.80154 0.81972 0.87975 1.90745 1.40910 1.56487 1.51086 1.48161 1.58019 1.08273 1.19853 1.21676 0.96099 0.90661 0.92739 1.21807 1.00696 0.97201 0.96470 1.22355 0.87722 0.96861 0.91194 0.92282 1.87728 1.30877 1.73773 1.37886 1.23053 0.99613 0.94260 0.85816 1.22045 0.90285 0.95670 0.95824 1.44605 1.05251 1.61305 1.21028 1.18886 0.82358 1.46726 0.90943 0.89308 1.25246 0.96160 0.99143 0.96685 1.69821 1.25193 1.46582 1.13005 0.87011 0.82296 0.78905 0.80692 1.21568 1.22883 1.19394 1.21639 0.96829 0.90314 0.88230 0.89625 1.22182 0.98831 0.97320 0.83622 0.91208 0.91443 0.91928 0.93715 0.93350 0.91853 0.92296 0.92229 0.91677 0.90335 0.90607 0.90480 0.90376 0.90110 0.90121 0.92964 0.89631 0.89946 0.94757 0.92588 0.89038 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.52 6.66 37.16 0.25 0.77 16 3 O -0.38 -4.59 10.31 -40.07 -0.41 -5.00 16 4 C 0.07 0.60 6.32 37.16 0.23 0.84 16 5 C 0.06 0.57 6.32 37.16 0.23 0.81 16 6 O -0.35 -4.95 9.84 -59.73 -0.59 -5.54 16 7 C 0.05 0.55 4.77 36.01 0.17 0.72 16 8 C 0.51 8.51 7.78 -10.98 -0.09 8.42 16 9 O -0.52 -11.33 15.91 -14.35 -0.23 -11.55 16 10 N -0.61 -9.45 2.96 -173.09 -0.51 -9.96 16 11 C 0.11 1.26 6.17 -3.70 -0.02 1.23 16 12 C -0.12 -1.45 5.82 -26.91 -0.16 -1.60 16 13 C 0.08 1.26 2.74 -26.64 -0.07 1.19 16 14 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 15 O -0.38 -6.41 9.59 -35.23 -0.34 -6.75 16 16 C 0.05 0.88 6.98 37.28 0.26 1.14 16 17 C 0.09 1.86 3.87 -3.55 -0.01 1.84 16 18 N -0.60 -14.01 2.50 -163.88 -0.41 -14.42 16 19 C -0.26 -7.25 10.14 -15.06 -0.15 -7.40 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 21 C 0.03 0.78 5.25 -17.43 -0.09 0.69 16 22 N -0.90 -27.62 13.97 55.49 0.78 -26.85 16 23 Si 0.88 22.40 24.32 -169.99 -4.13 18.26 16 24 H -0.29 -6.92 6.58 56.52 0.37 -6.55 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.27 -6.82 6.59 56.52 0.37 -6.45 16 27 C 0.14 2.72 3.02 -67.08 -0.20 2.52 16 28 H 0.09 1.77 7.99 -51.93 -0.42 1.35 16 29 C 0.10 2.01 5.61 -3.98 -0.02 1.99 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 40 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 41 H 0.08 0.60 5.95 -51.93 -0.31 0.29 16 42 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.90 4.58 -51.93 -0.24 1.66 16 48 H 0.03 0.74 5.97 -51.93 -0.31 0.43 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.09 2.08 7.00 -51.93 -0.36 1.71 16 51 H 0.07 1.33 6.57 -51.93 -0.34 0.99 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -35.97 393.39 -7.95 -43.92 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.74 Total: -0.27 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 0.71 Total: 12.23 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.15 Total: -51.22 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.57 Total: -28.85 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.97 -7.95 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177157527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.943 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds