Wall clock time and date at job start Wed Apr 1 2020 03:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45200 * 109.47084 * 120.00390 * 2 1 3 6 6 C 1.34631 * 117.00509 * 59.99476 * 5 2 1 7 7 O 1.21513 * 119.99785 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00271 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00036 * 179.72714 * 8 6 5 10 10 C 1.50703 * 109.47126 * 270.27831 * 9 8 6 11 11 H 1.08002 * 119.99820 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46637 * 59.99722 * 14 12 10 16 16 H 1.48498 * 109.47245 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47130 * 300.00125 * 14 12 10 18 18 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 8 6 20 20 O 1.21281 * 119.99990 * 0.02562 * 19 18 8 21 21 N 1.34772 * 120.00069 * 179.97438 * 19 18 8 22 22 C 1.46496 * 120.00214 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47242 * 179.97438 * 22 21 19 24 24 H 1.08997 * 112.84526 * 43.80462 * 23 22 21 25 25 C 1.53777 * 113.61479 * 174.99703 * 23 22 21 26 26 C 1.53783 * 87.08033 * 139.98286 * 25 23 22 27 27 H 1.09004 * 113.61182 * 89.11853 * 26 25 23 28 28 O 1.42905 * 113.61399 * 220.02107 * 26 25 23 29 29 C 1.53774 * 113.61401 * 272.50023 * 23 22 21 30 30 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 31 31 H 1.09001 * 109.47385 * 60.00084 * 1 2 3 32 32 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46890 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 35 35 H 1.08993 * 109.46971 * 59.99946 * 3 2 1 36 36 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 37 37 H 1.09009 * 109.47244 * 60.00391 * 4 2 1 38 38 H 1.08998 * 109.47345 * 179.97438 * 4 2 1 39 39 H 1.08994 * 109.47173 * 30.28203 * 9 8 6 40 40 H 1.09005 * 109.47077 * 150.28374 * 9 8 6 41 41 H 0.96995 * 119.99689 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.46803 * 29.71536 * 18 8 6 43 43 H 1.09000 * 109.47214 * 149.72329 * 18 8 6 44 44 H 0.97000 * 119.99813 * 0.02562 * 21 19 18 45 45 H 1.08997 * 109.47383 * 300.00029 * 22 21 19 46 46 H 1.09000 * 109.47008 * 60.00245 * 22 21 19 47 47 H 1.08999 * 113.61501 * 254.53624 * 25 23 22 48 48 H 1.09010 * 113.61335 * 25.35264 * 25 23 22 49 49 H 0.96698 * 113.99511 * 179.97438 * 28 26 25 50 50 H 1.09002 * 113.61580 * 334.56250 * 29 23 22 51 51 H 1.08995 * 113.61718 * 105.47471 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.6694 -4.0652 2.5859 10 6 0.3728 -4.1292 3.3513 11 1 -0.1062 -3.2184 3.6792 12 6 -0.2014 -5.3504 3.6338 13 7 0.3821 -6.4595 3.2349 14 14 -1.8083 -5.4298 4.5831 15 1 -2.8631 -4.7023 3.8324 16 1 -2.2124 -6.8484 4.7546 17 1 -1.6271 -4.8015 5.9164 18 6 2.9133 -2.0180 3.4228 19 6 4.3633 -2.2115 3.0605 20 8 4.6613 -2.8292 2.0602 21 7 5.3289 -1.6973 3.8476 22 6 6.7385 -1.8849 3.4953 23 6 7.6213 -1.2075 4.5454 24 1 7.2872 -1.3975 5.5654 25 6 9.1252 -1.4493 4.3346 26 6 9.3373 0.0210 4.7325 27 1 9.4727 0.1682 5.8040 28 8 10.3290 0.6885 3.9495 29 6 7.8987 0.2764 4.2525 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2495 39 1 1.5367 -4.5261 1.6071 40 1 2.4434 -4.5993 3.1372 41 1 -0.0218 -7.3186 3.4340 42 1 2.6863 -0.9524 3.4564 43 1 2.7205 -2.4617 4.3995 44 1 5.0906 -1.2030 4.6475 45 1 6.9659 -2.9503 3.4615 46 1 6.9309 -1.4412 2.5185 47 1 9.5564 -2.1592 5.0404 48 1 9.3919 -1.6659 3.3001 49 1 10.4665 1.6137 4.1948 50 1 7.8303 0.5330 3.1953 51 1 7.3400 0.9596 4.8920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184860661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:38 Heat of formation + Delta-G solvation = -146.948453 kcal Electronic energy + Delta-G solvation = -31295.203274 eV Core-core repulsion = 27002.724279 eV Total energy + Delta-G solvation = -4292.478995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.24954 -39.90942 -38.95268 -36.82703 -35.78574 -34.63479 -33.90033 -33.53956 -32.47100 -29.16345 -27.52336 -27.19452 -27.06315 -26.17745 -26.00693 -23.37374 -22.61942 -20.97850 -20.57424 -19.77056 -18.72856 -17.98847 -17.21527 -17.02992 -16.27592 -16.11558 -15.90969 -15.64822 -15.23945 -15.18764 -14.82420 -14.41501 -14.26707 -13.94651 -13.79308 -13.65979 -13.26178 -12.88792 -12.78773 -12.67600 -12.35267 -12.31307 -11.91522 -11.89860 -11.77988 -11.63003 -11.59083 -11.54843 -11.22816 -11.15642 -11.08273 -10.89315 -10.87206 -10.64799 -10.56574 -10.18005 -10.14253 -9.96280 -9.78674 -9.48961 -9.19179 -8.93000 -8.43088 -7.75428 -6.03678 -4.09530 2.87308 2.98510 3.23874 3.31663 3.36805 3.39775 3.77652 3.87160 4.18939 4.22961 4.40972 4.46456 4.52154 4.61029 4.92553 5.00239 5.02359 5.04191 5.18982 5.19408 5.30073 5.38392 5.42193 5.48806 5.55362 5.58606 5.62488 5.73829 5.75422 5.79227 5.83208 5.85058 5.89049 5.93948 6.06769 6.15524 6.17078 6.55596 6.64442 6.68168 6.81272 7.19060 7.27944 7.46863 7.53079 7.64851 7.92159 8.20865 8.34988 8.52627 8.91055 9.25024 9.55881 11.04207 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008796 B = 0.003211 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.545244 B = 8717.992392 C =11152.581957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.376 6.376 6 C 0.652 3.348 7 O -0.560 6.560 8 N -0.561 5.561 9 C 0.266 3.734 10 C -0.532 4.532 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.101 3.899 19 C 0.495 3.505 20 O -0.523 6.523 21 N -0.736 5.736 22 C 0.134 3.866 23 C -0.122 4.122 24 H 0.100 0.900 25 C -0.120 4.120 26 C 0.074 3.926 27 H 0.082 0.918 28 O -0.561 6.561 29 C -0.164 4.164 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.264 0.736 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.398 0.602 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.377 0.623 50 H 0.092 0.908 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.224 18.073 3.818 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.291 6.291 6 C 0.406 3.594 7 O -0.448 6.448 8 N -0.299 5.299 9 C 0.149 3.851 10 C -0.571 4.571 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.027 4.027 19 C 0.280 3.720 20 O -0.397 6.397 21 N -0.391 5.391 22 C 0.010 3.990 23 C -0.141 4.141 24 H 0.118 0.882 25 C -0.158 4.158 26 C 0.015 3.985 27 H 0.099 0.901 28 O -0.366 6.366 29 C -0.201 4.201 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.232 0.768 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.224 0.776 50 H 0.110 0.890 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.204 16.661 2.453 22.031 hybrid contribution -1.004 0.658 1.247 1.731 sum 13.200 17.319 3.699 22.088 Atomic orbital electron populations 1.22509 0.94337 1.05493 1.01638 1.21855 0.94135 0.91107 0.82938 1.21815 1.01844 0.93238 1.02516 1.22488 1.01282 1.03903 0.96176 1.86221 1.72147 1.25092 1.45684 1.17954 0.79163 0.79714 0.82551 1.90847 1.41166 1.69937 1.42865 1.46872 1.49353 1.14342 1.19312 1.19331 0.94910 0.72163 0.98717 1.21426 1.07246 0.92687 1.35716 0.92303 1.24925 0.97614 0.95400 0.96002 1.69938 1.39486 0.97660 1.45969 0.86546 0.83705 0.76970 0.80099 1.20169 1.21195 1.20231 1.21252 0.86518 1.00108 0.94829 1.21664 0.88659 0.78383 0.83325 1.90719 1.83527 1.39424 1.26012 1.45981 1.05843 1.58400 1.28830 1.21221 0.79916 1.00637 0.97243 1.22569 0.95207 0.96222 1.00063 0.88184 1.23047 0.94317 0.94929 1.03500 1.23361 0.86872 0.93910 0.94333 0.90057 1.86546 1.60050 1.28607 1.61389 1.23780 0.97040 0.96399 1.02907 0.92482 0.91864 0.88877 0.91904 0.90695 0.91814 0.89062 0.91876 0.92539 0.93388 0.94520 0.92581 0.88095 0.86931 0.76813 0.91376 0.91551 0.90487 0.88777 0.77600 0.88977 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 8.37 37.16 0.31 -2.54 16 2 C 0.14 2.17 1.13 -90.62 -0.10 2.06 16 3 C -0.14 -1.59 8.85 37.16 0.33 -1.26 16 4 C -0.18 -2.91 8.37 37.16 0.31 -2.60 16 5 O -0.38 -7.12 8.71 -40.30 -0.35 -7.47 16 6 C 0.65 14.89 7.70 54.05 0.42 15.31 16 7 O -0.56 -14.31 11.46 -19.28 -0.22 -14.53 16 8 N -0.56 -12.72 1.94 -182.24 -0.35 -13.07 16 9 C 0.27 7.17 5.16 -5.19 -0.03 7.15 16 10 C -0.53 -14.95 9.38 -34.44 -0.32 -15.27 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.10 1.73 5.90 -5.19 -0.03 1.70 16 19 C 0.49 8.35 7.90 -10.99 -0.09 8.26 16 20 O -0.52 -11.39 16.43 5.56 0.09 -11.29 16 21 N -0.74 -8.67 5.56 -60.30 -0.33 -9.00 16 22 C 0.13 1.46 5.51 -4.04 -0.02 1.44 16 23 C -0.12 -0.91 3.75 -89.81 -0.34 -1.25 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 C -0.12 -0.92 7.47 -25.92 -0.19 -1.11 16 26 C 0.07 0.50 5.21 -25.91 -0.14 0.37 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 O -0.56 -4.39 13.67 -35.23 -0.48 -4.87 16 29 C -0.16 -1.13 7.46 -25.92 -0.19 -1.32 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.80 5.88 -51.93 -0.31 1.49 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.79 5.88 -51.93 -0.31 1.48 16 37 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.47 7.42 -51.93 -0.39 1.09 16 40 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 1.44 7.37 -51.93 -0.38 1.06 16 43 H 0.11 1.75 8.07 -51.93 -0.42 1.33 16 44 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.83 8.10 -51.92 -0.42 0.41 16 49 H 0.38 1.31 9.12 45.56 0.42 1.73 16 50 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 417.50 15.07 6.29 6.29 Total: -1.00 -36.93 417.50 -7.83 -44.76 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.00 Total: 5.81 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.18 Total: 12.63 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.05 Total: -47.92 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.96 Total: -38.17 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.93 -7.83 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184860661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.191 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds