Wall clock time and date at job start Wed Apr 1 2020 03:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45200 * 109.47084 * 120.00390 * 2 1 3 6 6 C 1.34631 * 117.00509 * 59.99476 * 5 2 1 7 7 O 1.21513 * 119.99785 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00271 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00036 * 179.72714 * 8 6 5 10 10 C 1.50703 * 109.47126 * 270.27831 * 9 8 6 11 11 H 1.08002 * 119.99820 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46637 * 59.99722 * 14 12 10 16 16 H 1.48498 * 109.47245 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47130 * 300.00125 * 14 12 10 18 18 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 8 6 20 20 O 1.21281 * 119.99990 * 0.02562 * 19 18 8 21 21 N 1.34772 * 120.00069 * 179.97438 * 19 18 8 22 22 C 1.46496 * 120.00214 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47242 * 179.97438 * 22 21 19 24 24 H 1.08997 * 112.84526 * 43.80462 * 23 22 21 25 25 C 1.53777 * 113.61479 * 174.99703 * 23 22 21 26 26 C 1.53783 * 87.08033 * 139.98286 * 25 23 22 27 27 H 1.09004 * 113.61182 * 89.11853 * 26 25 23 28 28 O 1.42905 * 113.61399 * 220.02107 * 26 25 23 29 29 C 1.53774 * 113.61401 * 272.50023 * 23 22 21 30 30 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 31 31 H 1.09001 * 109.47385 * 60.00084 * 1 2 3 32 32 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46890 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 35 35 H 1.08993 * 109.46971 * 59.99946 * 3 2 1 36 36 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 37 37 H 1.09009 * 109.47244 * 60.00391 * 4 2 1 38 38 H 1.08998 * 109.47345 * 179.97438 * 4 2 1 39 39 H 1.08994 * 109.47173 * 30.28203 * 9 8 6 40 40 H 1.09005 * 109.47077 * 150.28374 * 9 8 6 41 41 H 0.96995 * 119.99689 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.46803 * 29.71536 * 18 8 6 43 43 H 1.09000 * 109.47214 * 149.72329 * 18 8 6 44 44 H 0.97000 * 119.99813 * 0.02562 * 21 19 18 45 45 H 1.08997 * 109.47383 * 300.00029 * 22 21 19 46 46 H 1.09000 * 109.47008 * 60.00245 * 22 21 19 47 47 H 1.08999 * 113.61501 * 254.53624 * 25 23 22 48 48 H 1.09010 * 113.61335 * 25.35264 * 25 23 22 49 49 H 0.96698 * 113.99511 * 179.97438 * 28 26 25 50 50 H 1.09002 * 113.61580 * 334.56250 * 29 23 22 51 51 H 1.08995 * 113.61718 * 105.47471 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.6694 -4.0652 2.5859 10 6 0.3728 -4.1292 3.3513 11 1 -0.1062 -3.2184 3.6792 12 6 -0.2014 -5.3504 3.6338 13 7 0.3821 -6.4595 3.2349 14 14 -1.8083 -5.4298 4.5831 15 1 -2.8631 -4.7023 3.8324 16 1 -2.2124 -6.8484 4.7546 17 1 -1.6271 -4.8015 5.9164 18 6 2.9133 -2.0180 3.4228 19 6 4.3633 -2.2115 3.0605 20 8 4.6613 -2.8292 2.0602 21 7 5.3289 -1.6973 3.8476 22 6 6.7385 -1.8849 3.4953 23 6 7.6213 -1.2075 4.5454 24 1 7.2872 -1.3975 5.5654 25 6 9.1252 -1.4493 4.3346 26 6 9.3373 0.0210 4.7325 27 1 9.4727 0.1682 5.8040 28 8 10.3290 0.6885 3.9495 29 6 7.8987 0.2764 4.2525 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2495 39 1 1.5367 -4.5261 1.6071 40 1 2.4434 -4.5993 3.1372 41 1 -0.0218 -7.3186 3.4340 42 1 2.6863 -0.9524 3.4564 43 1 2.7205 -2.4617 4.3995 44 1 5.0906 -1.2030 4.6475 45 1 6.9659 -2.9503 3.4615 46 1 6.9309 -1.4412 2.5185 47 1 9.5564 -2.1592 5.0404 48 1 9.3919 -1.6659 3.3001 49 1 10.4665 1.6137 4.1948 50 1 7.8303 0.5330 3.1953 51 1 7.3400 0.9596 4.8920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184860661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:36 Heat of formation + Delta-G solvation = -175.202019 kcal Electronic energy + Delta-G solvation = -31296.428441 eV Core-core repulsion = 27002.724279 eV Total energy + Delta-G solvation = -4293.704161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.80648 -40.88276 -40.02389 -38.39208 -36.66377 -36.33417 -35.11006 -34.96215 -34.40423 -30.62912 -29.21753 -28.34444 -28.24857 -27.45414 -26.64774 -25.39321 -23.41241 -22.51254 -21.84494 -20.55698 -20.16796 -18.98935 -18.87684 -18.37072 -17.87643 -17.71651 -16.97365 -16.81885 -16.66058 -16.48614 -16.16286 -15.75251 -15.39095 -15.26068 -15.03577 -14.89189 -14.55261 -14.34791 -14.30894 -13.62804 -13.50083 -13.39212 -13.23866 -13.16679 -13.02026 -12.92087 -12.80573 -12.72930 -12.60460 -12.51615 -12.48270 -12.37851 -12.23789 -12.11321 -11.83469 -11.80559 -11.30982 -11.24109 -11.14149 -10.91422 -10.66390 -10.63244 -10.08418 -9.58823 -8.21231 -6.37441 1.28699 1.40488 1.45162 1.52882 1.62557 1.86130 2.26367 2.41973 3.04991 3.10950 3.34777 3.53898 3.64886 3.81611 3.83821 3.86017 3.94685 3.99117 4.04275 4.16538 4.29800 4.39038 4.41111 4.50366 4.62320 4.68299 4.70640 4.77303 4.83309 4.84189 4.86246 4.88459 4.90873 4.97641 5.06324 5.11866 5.19258 5.20008 5.32627 5.38546 5.39592 5.49864 5.54096 5.58054 5.75570 6.01405 6.47911 6.64223 6.71666 6.96195 7.27329 7.30027 7.53541 8.86716 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008796 B = 0.003211 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.545244 B = 8717.992392 C =11152.581957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 C -0.127 4.127 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.597 6.597 8 N -0.571 5.571 9 C 0.288 3.712 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.973 3.027 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.254 1.254 18 C 0.098 3.902 19 C 0.495 3.505 20 O -0.582 6.582 21 N -0.708 5.708 22 C 0.134 3.866 23 C -0.110 4.110 24 H 0.124 0.876 25 C -0.130 4.130 26 C 0.079 3.921 27 H 0.108 0.892 28 O -0.584 6.584 29 C -0.159 4.159 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.052 0.948 39 H -0.005 1.005 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.420 0.580 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.073 0.927 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.097 21.471 6.206 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.184 4.184 4 C -0.235 4.235 5 O -0.282 6.282 6 C 0.404 3.596 7 O -0.488 6.488 8 N -0.309 5.309 9 C 0.169 3.831 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.797 3.203 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.178 1.178 18 C -0.029 4.029 19 C 0.280 3.720 20 O -0.461 6.461 21 N -0.363 5.363 22 C 0.010 3.990 23 C -0.129 4.129 24 H 0.142 0.858 25 C -0.168 4.168 26 C 0.021 3.979 27 H 0.125 0.875 28 O -0.392 6.392 29 C -0.197 4.197 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.013 0.987 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.257 0.743 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.245 0.755 50 H 0.091 0.909 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.129 20.157 4.910 25.100 hybrid contribution -0.873 -0.343 0.416 1.026 sum 13.256 19.814 5.326 24.427 Atomic orbital electron populations 1.22448 0.94178 1.03171 1.03707 1.22435 0.94603 0.93071 0.81483 1.21829 1.02054 0.89782 1.04698 1.22442 1.00995 1.01890 0.98193 1.86226 1.71865 1.22773 1.47312 1.18089 0.78691 0.80832 0.82031 1.90835 1.42773 1.71088 1.44151 1.46704 1.50270 1.13158 1.20720 1.18702 0.94547 0.74522 0.95356 1.21657 1.07647 0.93085 1.35788 0.91880 1.25914 1.01454 0.94819 0.96866 1.70086 1.41374 0.98367 1.47110 0.85388 0.78404 0.77232 0.79290 1.20255 1.20665 1.17837 1.21589 0.85771 1.01659 0.93883 1.21633 0.89361 0.77978 0.82984 1.90706 1.84263 1.42373 1.28742 1.45734 1.05448 1.56681 1.28389 1.21275 0.79716 0.99960 0.98078 1.22542 0.94147 0.96395 0.99801 0.85780 1.23099 0.94515 0.96506 1.02691 1.23414 0.86395 0.92678 0.95441 0.87462 1.86501 1.60296 1.30274 1.62174 1.23720 0.97666 0.96026 1.02247 0.91559 0.88613 0.93283 0.91598 0.87620 0.90499 0.93420 0.88435 0.92857 0.98686 0.96079 0.92341 0.84687 0.85249 0.74263 0.93182 0.93231 0.89467 0.90833 0.75506 0.90858 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.39 8.37 71.98 0.60 -4.79 16 2 C 0.12 3.68 1.13 -10.79 -0.01 3.67 16 3 C -0.13 -2.51 8.85 71.98 0.64 -1.87 16 4 C -0.18 -5.74 8.37 71.98 0.60 -5.13 16 5 O -0.37 -13.87 8.71 -55.40 -0.48 -14.35 16 6 C 0.65 30.85 7.70 129.79 1.00 31.85 16 7 O -0.60 -32.61 11.46 19.80 0.23 -32.38 16 8 N -0.57 -26.88 1.94 -960.91 -1.87 -28.75 16 9 C 0.29 16.46 5.16 85.63 0.44 16.90 16 10 C -0.54 -31.33 9.38 25.60 0.24 -31.09 16 11 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 12 C 0.01 0.50 5.46 84.65 0.46 0.96 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 14 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 18 C 0.10 3.28 5.90 85.63 0.51 3.79 16 19 C 0.49 16.87 7.90 87.66 0.69 17.56 16 20 O -0.58 -26.68 16.43 -3.03 -0.05 -26.73 16 21 N -0.71 -15.89 5.56 -463.07 -2.57 -18.46 16 22 C 0.13 2.91 5.51 86.38 0.48 3.38 16 23 C -0.11 -1.43 3.75 -10.27 -0.04 -1.47 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 25 C -0.13 -1.84 7.47 31.12 0.23 -1.61 16 26 C 0.08 0.88 5.21 31.12 0.16 1.04 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 O -0.58 -8.18 13.67 -148.98 -2.04 -10.22 16 29 C -0.16 -1.82 7.46 31.12 0.23 -1.59 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.95 5.88 -2.39 -0.01 1.94 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.97 5.88 -2.39 -0.01 1.96 16 37 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 39 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 40 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.14 3.58 7.37 -2.39 -0.02 3.56 16 43 H 0.13 3.89 8.07 -2.39 -0.02 3.87 16 44 H 0.42 5.83 8.47 -92.71 -0.79 5.05 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 1.27 7.84 -2.39 -0.02 1.25 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.34 8.10 -2.38 -0.02 1.32 16 49 H 0.39 1.95 9.12 -74.06 -0.68 1.27 16 50 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 51 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -87.45 417.50 1.24 -86.21 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.53 Total: 23.53 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 6.24 Total: 31.59 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.16 Total: -104.08 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -2.34 Total: -83.68 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -87.45 1.24 -86.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184860661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.995 kcal (2) G-P(sol) polarization free energy of solvation -87.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds