Wall clock time and date at job start Wed Apr 1 2020 03:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47324 * 2 1 4 4 C 1.42905 * 114.00050 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47004 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47359 * 65.00078 * 5 4 3 7 7 C 1.42901 * 114.00533 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46783 * 29.99811 * 7 6 5 9 9 C 1.52996 * 109.46858 * 270.00185 * 7 6 5 10 10 C 1.50697 * 109.47204 * 149.99996 * 7 6 5 11 11 O 1.21276 * 120.00427 * 14.68464 * 10 7 6 12 12 N 1.34781 * 119.99667 * 194.68303 * 10 7 6 13 13 C 1.44958 * 117.33961 * 5.53000 * 12 10 7 14 14 C 1.51962 * 111.94944 * 203.77534 * 13 12 10 15 15 O 1.41322 * 111.60488 * 319.72645 * 14 13 12 16 16 C 1.40845 * 118.30527 * 56.88602 * 15 14 13 17 17 H 1.09002 * 108.89226 * 188.18166 * 16 15 14 18 18 C 1.53916 * 110.47092 * 68.14679 * 16 15 14 19 19 N 1.46779 * 107.61867 * 221.64948 * 18 16 15 20 20 C 1.36942 * 125.36118 * 178.67043 * 19 18 16 21 21 H 1.07999 * 119.99552 * 176.81504 * 20 19 18 22 22 C 1.38813 * 119.99781 * 356.81346 * 20 19 18 23 23 N 1.31626 * 119.99594 * 211.05994 * 22 20 19 24 24 Si 1.86791 * 120.00407 * 31.05874 * 22 20 19 25 25 H 1.48504 * 109.47258 * 275.55961 * 24 22 20 26 26 H 1.48506 * 109.47189 * 35.55807 * 24 22 20 27 27 H 1.48501 * 109.47568 * 155.56003 * 24 22 20 28 28 C 1.46862 * 109.27338 * 358.40209 * 19 18 16 29 29 C 1.44552 * 117.33427 * 185.54855 * 12 10 7 30 30 H 1.09005 * 109.32050 * 286.12650 * 29 12 10 31 31 H 1.08997 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46652 * 300.00004 * 1 2 3 33 33 H 1.09004 * 109.46927 * 59.99255 * 1 2 3 34 34 H 1.09005 * 109.46842 * 240.00771 * 2 1 3 35 35 H 1.08992 * 109.47138 * 120.00380 * 2 1 3 36 36 H 1.08998 * 109.46394 * 60.00273 * 4 3 2 37 37 H 1.08994 * 109.47073 * 300.00371 * 4 3 2 38 38 H 1.09001 * 109.47344 * 305.00181 * 5 4 3 39 39 H 1.08998 * 109.46912 * 185.00047 * 5 4 3 40 40 H 1.08995 * 109.47160 * 186.18703 * 9 7 6 41 41 H 1.08998 * 109.47483 * 306.18761 * 9 7 6 42 42 H 1.09004 * 109.47439 * 66.19012 * 9 7 6 43 43 H 1.09004 * 108.98735 * 83.13706 * 13 12 10 44 44 H 1.09008 * 108.91973 * 324.36477 * 13 12 10 45 45 H 1.08997 * 109.05425 * 199.17362 * 14 13 12 46 46 H 1.09001 * 109.05024 * 80.27139 * 14 13 12 47 47 H 1.09000 * 109.95305 * 102.05270 * 18 16 15 48 48 H 1.09003 * 109.70387 * 341.10138 * 18 16 15 49 49 H 0.96999 * 119.99925 * 354.97181 * 23 22 20 50 50 H 1.09001 * 110.06707 * 137.31144 * 28 19 18 51 51 H 1.08998 * 110.07278 * 258.83605 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3988 3.5447 1.2217 7 6 3.7206 4.9331 1.3249 8 1 3.7326 5.3782 0.3300 9 6 5.0986 5.0906 1.9708 10 6 2.6860 5.6268 2.1731 11 8 1.9255 4.9745 2.8564 12 7 2.6060 6.9723 2.1724 13 6 3.4580 7.6893 1.2444 14 6 3.7223 9.1144 1.7009 15 8 2.5619 9.7103 2.2446 16 6 1.9281 9.0714 3.3280 17 1 0.9815 9.5731 3.5290 18 6 2.8147 9.1359 4.5846 19 7 2.7432 7.8277 5.2464 20 6 3.4169 7.4783 6.3862 21 1 3.2607 6.5058 6.8291 22 6 4.3004 8.3742 6.9724 23 7 5.3532 7.9287 7.6249 24 14 3.9955 10.2120 6.8352 25 1 4.5470 10.7107 5.5497 26 1 2.5349 10.4764 6.8830 27 1 4.6621 10.9101 7.9637 28 6 1.8303 6.9547 4.4971 29 6 1.6779 7.5825 3.0974 30 1 0.6597 7.4334 2.7378 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8332 0.9767 -0.8909 37 1 3.8341 0.9764 0.8891 38 1 3.3493 3.4419 -0.8412 39 1 4.9082 3.0254 -0.0899 40 1 5.2972 6.1472 2.1501 41 1 5.1199 4.5511 2.9176 42 1 5.8605 4.6856 1.3047 43 1 2.9762 7.7137 0.2669 44 1 4.4084 7.1626 1.1579 45 1 4.0594 9.7044 0.8486 46 1 4.5061 9.1058 2.4583 47 1 2.4496 9.9113 5.2580 48 1 3.8443 9.3491 4.2973 49 1 5.4731 6.9755 7.7589 50 1 2.2541 5.9538 4.4139 51 1 0.8617 6.9109 4.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219049404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:09 Heat of formation + Delta-G solvation = -137.478355 kcal Electronic energy + Delta-G solvation = -32476.334525 eV Core-core repulsion = 28184.266185 eV Total energy + Delta-G solvation = -4292.068341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.39327 -40.33164 -39.29098 -38.31522 -37.81823 -36.32391 -34.68527 -33.31604 -32.33159 -31.77829 -29.89182 -29.72295 -29.47860 -26.36397 -25.25383 -24.79271 -23.70902 -23.50946 -22.63418 -21.73594 -20.21281 -19.48294 -18.62568 -18.61940 -18.15363 -17.76876 -17.32874 -17.07949 -16.79426 -16.41890 -16.24729 -15.95881 -15.84745 -15.73942 -15.44495 -15.14944 -14.87927 -14.63783 -14.33900 -14.20723 -13.79978 -13.69045 -13.63231 -13.51019 -13.29831 -13.13669 -13.02950 -12.79846 -12.63146 -12.53508 -12.31905 -12.19115 -12.15420 -11.91050 -11.80631 -11.69421 -11.39928 -11.04852 -10.78525 -10.57199 -10.55912 -10.32354 -9.65879 -9.17684 -8.77285 -5.43536 1.34978 1.41638 1.47315 1.57927 1.66008 2.45884 2.54463 2.73765 2.75921 2.93218 3.20672 3.38658 3.43568 3.54394 3.76308 3.80671 3.89700 3.95140 4.07221 4.11324 4.12673 4.15585 4.22028 4.27331 4.29737 4.35564 4.40020 4.45776 4.48572 4.53674 4.58771 4.65425 4.69448 4.73963 4.81065 4.86157 4.87321 4.91829 4.98546 4.99676 5.12242 5.22322 5.47494 5.55134 5.96170 6.01604 6.17942 6.28042 6.33756 6.77906 7.06081 7.41561 8.05692 8.75009 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.003106 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.046099 B = 9012.090474 C = 9470.901971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.059 3.941 5 C 0.052 3.948 6 O -0.386 6.386 7 C 0.081 3.919 8 H 0.126 0.874 9 C -0.168 4.168 10 C 0.499 3.501 11 O -0.558 6.558 12 N -0.590 5.590 13 C 0.059 3.941 14 C 0.046 3.954 15 O -0.363 6.363 16 C 0.106 3.894 17 H 0.147 0.853 18 C 0.072 3.928 19 N -0.619 5.619 20 C -0.331 4.331 21 H 0.035 0.965 22 C -0.070 4.070 23 N -0.942 5.942 24 Si 1.109 2.891 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.302 1.302 28 C 0.118 3.882 29 C 0.123 3.877 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.156 0.844 46 H 0.035 0.965 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.247 0.753 50 H 0.048 0.952 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -6.193 -26.181 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.017 4.017 5 C -0.023 4.023 6 O -0.305 6.305 7 C 0.020 3.980 8 H 0.144 0.856 9 C -0.225 4.225 10 C 0.287 3.713 11 O -0.436 6.436 12 N -0.325 5.325 13 C -0.062 4.062 14 C -0.030 4.030 15 O -0.280 6.280 16 C 0.046 3.954 17 H 0.164 0.836 18 C -0.053 4.053 19 N -0.348 5.348 20 C -0.459 4.459 21 H 0.054 0.946 22 C -0.264 4.264 23 N -0.584 5.584 24 Si 0.935 3.065 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.231 1.231 28 C -0.008 4.008 29 C 0.018 3.982 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.174 0.826 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.410 -4.851 -25.338 25.910 hybrid contribution -0.241 -2.488 0.911 2.660 sum -2.651 -7.339 -24.427 25.643 Atomic orbital electron populations 1.21769 0.93604 1.03265 1.02229 1.22629 0.96047 0.83038 1.00840 1.87965 1.21971 1.27880 1.95581 1.22703 0.81400 0.95684 1.01937 1.22974 1.00381 0.92765 0.86211 1.88120 1.81253 1.21207 1.39896 1.21964 0.92363 0.83643 0.99996 0.85648 1.22275 0.95304 1.03217 1.01698 1.21249 0.84838 0.82299 0.82864 1.90646 1.44011 1.66003 1.42914 1.46740 1.41773 1.05659 1.38323 1.22250 0.96347 0.94469 0.93150 1.22654 0.87035 0.93391 0.99919 1.86944 1.43018 1.50340 1.47673 1.22439 0.97005 0.90845 0.85075 0.83580 1.22457 0.99198 0.88624 0.94984 1.44548 1.53007 1.10216 1.27034 1.19766 1.21713 0.99866 1.04524 0.94646 1.27010 0.91635 1.09239 0.98561 1.71036 1.22998 1.15457 1.48931 0.83320 0.75727 0.71148 0.76287 1.19152 1.19994 1.23052 1.21897 0.93133 0.95555 0.90206 1.21452 0.93807 0.94094 0.88896 0.88610 0.88869 0.93815 0.91926 0.91195 0.93622 0.88369 0.93339 0.91144 0.88403 0.90504 0.94515 0.87272 0.87563 0.87380 0.82647 0.94650 0.94016 0.94559 0.94336 0.93358 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.41 -10.29 10.31 -144.34 -1.49 -11.78 16 4 C 0.06 1.08 6.32 71.98 0.45 1.54 16 5 C 0.05 0.95 6.13 71.98 0.44 1.39 16 6 O -0.39 -11.37 9.53 -125.84 -1.20 -12.57 16 7 C 0.08 2.09 2.28 29.85 0.07 2.15 16 8 H 0.13 2.02 6.86 -2.38 -0.02 2.01 16 9 C -0.17 -4.06 9.10 71.98 0.65 -3.41 16 10 C 0.50 17.68 6.25 87.66 0.55 18.23 16 11 O -0.56 -25.69 13.87 15.60 0.22 -25.47 16 12 N -0.59 -18.46 3.09 -806.40 -2.49 -20.95 16 13 C 0.06 1.21 5.54 86.33 0.48 1.69 16 14 C 0.05 1.03 6.72 71.64 0.48 1.51 16 15 O -0.36 -10.09 10.25 -146.15 -1.50 -11.59 16 16 C 0.11 3.49 3.81 30.81 0.12 3.60 16 17 H 0.15 4.05 8.14 -2.39 -0.02 4.03 16 18 C 0.07 3.14 4.49 86.64 0.39 3.53 16 19 N -0.62 -32.48 3.37 -696.31 -2.35 -34.82 16 20 C -0.33 -20.56 10.40 84.03 0.87 -19.68 16 21 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 22 C -0.07 -4.29 5.44 84.86 0.46 -3.83 16 23 N -0.94 -61.86 13.70 21.65 0.30 -61.56 16 24 Si 1.11 54.87 24.63 68.60 1.69 56.56 16 25 H -0.27 -11.91 6.36 99.48 0.63 -11.28 16 26 H -0.27 -12.57 6.38 99.48 0.63 -11.94 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 C 0.12 5.53 6.29 86.70 0.55 6.08 16 29 C 0.12 4.36 3.35 45.66 0.15 4.52 16 30 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 39 H 0.10 1.10 8.02 -2.39 -0.02 1.09 16 40 H 0.08 1.85 6.10 -2.39 -0.01 1.84 16 41 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.71 8.02 -2.38 -0.02 1.69 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 1.79 4.34 -2.38 -0.01 1.78 16 45 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 0.97 6.83 -2.39 -0.02 0.96 16 47 H 0.04 1.86 4.38 -2.39 -0.01 1.85 16 48 H 0.04 1.67 5.12 -2.39 -0.01 1.66 16 49 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 50 H 0.05 2.60 5.10 -2.39 -0.01 2.59 16 51 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -89.53 387.14 0.81 -88.72 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.74 Total: 16.61 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.89 Total: 16.85 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -4.54 Total: -117.33 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -3.97 Total: -61.41 kcal Atomic # 14 Polarization: 54.87 SS G_CDS: 1.69 Total: 56.56 kcal Total: -89.53 0.81 -88.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219049404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.760 kcal (2) G-P(sol) polarization free energy of solvation -89.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds