Wall clock time and date at job start Wed Apr 1 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35530 * 125.68132 * 2 1 4 4 C 1.35460 * 108.87083 * 180.29816 * 3 2 1 5 5 C 1.39824 * 107.86256 * 359.72883 * 4 3 2 6 6 C 1.37654 * 125.67437 * 179.83139 * 2 1 3 7 7 C 1.46673 * 126.23395 * 359.97269 * 6 2 1 8 8 O 1.21692 * 120.00215 * 3.87806 * 7 6 2 9 9 N 1.34780 * 120.00253 * 183.87032 * 7 6 2 10 10 C 1.46493 * 120.00287 * 175.65156 * 9 7 6 11 11 C 1.53005 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46920 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46967 * 180.02562 * 12 11 10 14 14 C 1.36942 * 119.99901 * 269.99986 * 13 12 11 15 15 H 1.07992 * 119.99906 * 322.18452 * 14 13 12 16 16 C 1.38813 * 119.99784 * 142.19150 * 14 13 12 17 17 N 1.31623 * 119.99946 * 336.73728 * 16 14 13 18 18 Si 1.86799 * 119.99755 * 156.74591 * 16 14 13 19 19 H 1.48504 * 109.47332 * 59.99594 * 18 16 14 20 20 H 1.48499 * 109.46836 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47108 * 299.99734 * 18 16 14 22 22 C 1.46503 * 120.00188 * 89.99511 * 13 12 11 23 23 C 1.50706 * 109.46797 * 87.66836 * 22 13 12 24 24 C 1.38679 * 120.41698 * 266.52115 * 23 22 13 25 25 C 1.38627 * 118.41888 * 180.24444 * 24 23 22 26 26 C 1.38225 * 119.15968 * 359.74716 * 25 24 23 27 27 N 1.31849 * 120.76692 * 0.02562 * 26 25 24 28 28 C 1.31887 * 121.72446 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47434 * 264.39261 * 1 2 3 30 30 H 1.09001 * 109.46771 * 24.38984 * 1 2 3 31 31 H 1.08996 * 109.46919 * 144.38500 * 1 2 3 32 32 H 1.07998 * 125.56752 * 0.06282 * 3 2 1 33 33 H 1.08005 * 126.06343 * 179.69274 * 4 3 2 34 34 H 1.08007 * 126.45460 * 180.02562 * 5 4 3 35 35 H 0.97006 * 119.99645 * 355.65997 * 9 7 6 36 36 H 1.09003 * 109.47125 * 60.00883 * 10 9 7 37 37 H 1.08994 * 109.47282 * 300.00653 * 10 9 7 38 38 H 1.09003 * 109.46722 * 60.00218 * 11 10 9 39 39 H 1.08998 * 109.46889 * 299.99891 * 11 10 9 40 40 H 1.09000 * 109.47020 * 59.99798 * 12 11 10 41 41 H 1.09006 * 109.46848 * 299.99759 * 12 11 10 42 42 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.47341 * 327.67112 * 22 13 12 44 44 H 1.08995 * 109.47434 * 207.66810 * 22 13 12 45 45 H 1.08000 * 120.78599 * 359.96667 * 24 23 22 46 46 H 1.07995 * 120.41631 * 179.72402 * 25 24 23 47 47 H 1.08000 * 119.61376 * 180.02562 * 26 25 24 48 48 H 1.08006 * 119.61350 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7091 -0.0067 5 6 3.5779 -0.6889 -0.0047 6 6 2.2678 -1.1182 0.0033 7 6 1.8123 -2.5124 0.0080 8 8 0.6238 -2.7646 -0.0620 9 7 2.7100 -3.5144 0.0896 10 6 2.2517 -4.9022 0.1904 11 6 3.4622 -5.8346 0.2697 12 6 2.9834 -7.2840 0.3743 13 7 4.1424 -8.1768 0.4509 14 6 4.6941 -8.6826 -0.6959 15 1 4.0577 -8.9724 -1.5189 16 6 6.0711 -8.8230 -0.8003 17 7 6.8662 -8.0880 -0.0520 18 14 6.7957 -10.0550 -2.0031 19 1 6.3643 -9.7129 -3.3823 20 1 8.2779 -10.0114 -1.9234 21 1 6.3210 -11.4196 -1.6601 22 6 4.7115 -8.5283 1.7543 23 6 3.9984 -9.7368 2.3042 24 6 2.9158 -9.5854 3.1576 25 6 2.2939 -10.7252 3.6430 26 6 2.7668 -11.9659 3.2589 27 7 3.7962 -12.0720 2.4418 28 6 4.4127 -11.0097 1.9615 29 1 -0.3634 -0.1004 1.0227 30 1 -0.3633 0.9360 -0.4244 31 1 -0.3633 -0.8354 -0.5984 32 1 1.9084 2.1235 0.0010 33 1 4.4133 1.3610 -0.0130 34 1 4.4583 -1.3146 -0.0083 35 1 3.6596 -3.3166 0.0818 36 1 1.6565 -5.1529 -0.6878 37 1 1.6435 -5.0197 1.0872 38 1 4.0570 -5.5837 1.1480 39 1 4.0706 -5.7171 -0.6269 40 1 2.3888 -7.5345 -0.5042 41 1 2.3747 -7.4018 1.2708 42 1 7.8285 -8.1859 -0.1253 43 1 4.5901 -7.6910 2.4415 44 1 5.7717 -8.7532 1.6393 45 1 2.5684 -8.6028 3.4408 46 1 1.4508 -10.6448 4.3131 47 1 2.2875 -12.8588 3.6323 48 1 5.2529 -11.1362 1.2948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230675175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:34 Heat of formation + Delta-G solvation = 64.401455 kcal Electronic energy + Delta-G solvation = -28640.979291 eV Core-core repulsion = 24697.266786 eV Total energy + Delta-G solvation = -3943.712504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45577 -39.49662 -38.99938 -36.42527 -34.98593 -33.08339 -32.22003 -32.06648 -31.17285 -30.13998 -28.89644 -26.64697 -25.95931 -25.44368 -23.07042 -22.84682 -22.00415 -21.38241 -20.58835 -20.26186 -19.37253 -17.90582 -16.98040 -16.42182 -15.95878 -15.82906 -15.69180 -15.49518 -15.07108 -14.82923 -14.37326 -14.24094 -13.96020 -13.71630 -13.51998 -13.39124 -13.24414 -12.93065 -12.86564 -12.53260 -12.50772 -12.43879 -12.15630 -11.99100 -11.73294 -11.29030 -11.20114 -11.02050 -10.73069 -10.56569 -10.25967 -10.10737 -9.94631 -9.87910 -9.22763 -8.99388 -8.90882 -8.89014 -8.58362 -8.32985 -8.30418 -6.76744 -5.96861 -3.50091 1.39947 1.73903 1.87731 2.53985 2.61335 3.31411 3.38194 3.38982 3.41600 3.44537 4.34000 4.46014 4.61704 4.76145 4.81850 5.02578 5.05103 5.17654 5.22798 5.26784 5.27814 5.31653 5.44374 5.52231 5.53513 5.66668 5.76882 5.78939 5.91530 5.93800 6.03773 6.10072 6.11058 6.21067 6.38885 6.42523 6.53818 6.56672 6.66109 6.71375 6.83172 6.83659 7.00523 7.03487 7.05038 7.30380 7.45818 7.60390 7.71299 8.24541 8.36349 8.57987 9.01543 9.63272 10.22145 11.04692 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002404 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.065767 B =11642.154015 C =13290.911906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.413 5.413 3 C 0.009 3.991 4 C -0.208 4.208 5 C -0.141 4.141 6 C -0.050 4.050 7 C 0.584 3.416 8 O -0.558 6.558 9 N -0.711 5.711 10 C 0.122 3.878 11 C -0.145 4.145 12 C 0.154 3.846 13 N -0.571 5.571 14 C -0.265 4.265 15 H 0.061 0.939 16 C 0.020 3.980 17 N -0.879 5.879 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.182 3.818 23 C -0.122 4.122 24 C -0.084 4.084 25 C -0.181 4.181 26 C 0.069 3.931 27 N -0.492 5.492 28 C 0.114 3.886 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.404 0.596 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.258 0.742 43 H 0.037 0.963 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.142 0.858 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 13.477 4.371 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.086 5.086 3 C -0.127 4.127 4 C -0.232 4.232 5 C -0.168 4.168 6 C -0.164 4.164 7 C 0.372 3.628 8 O -0.438 6.438 9 N -0.362 5.362 10 C -0.001 4.001 11 C -0.186 4.186 12 C 0.027 3.973 13 N -0.290 5.290 14 C -0.395 4.395 15 H 0.079 0.921 16 C -0.182 4.182 17 N -0.519 5.519 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.204 1.204 22 C 0.055 3.945 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.201 4.201 26 C -0.088 4.088 27 N -0.201 5.201 28 C -0.044 4.044 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.159 0.841 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.031 12.433 4.075 15.897 hybrid contribution 0.537 0.478 -0.356 0.802 sum -8.494 12.911 3.718 15.895 Atomic orbital electron populations 1.22230 0.76201 1.04663 1.04165 1.43858 1.06788 1.05033 1.52880 1.22009 0.90780 0.91429 1.08440 1.20831 0.95982 0.95069 1.11308 1.21422 0.94589 0.95566 1.05176 1.20168 0.90475 0.87743 1.17987 1.17018 0.85735 0.83542 0.76517 1.90760 1.16331 1.85047 1.51686 1.45817 1.09854 1.06657 1.73839 1.21535 0.98258 0.78784 1.01536 1.22446 0.96063 0.96816 1.03232 1.20800 0.90255 0.87557 0.98697 1.43709 1.33441 1.50279 1.01531 1.18984 0.89146 1.36756 0.94570 0.92137 1.25142 0.96770 0.98208 0.98052 1.70026 1.03351 1.36707 1.41842 0.86576 0.77898 0.82305 0.81367 1.20578 1.21463 1.20419 1.19896 0.99491 0.89430 0.85645 1.22266 0.96563 0.99308 0.94517 1.21472 0.95040 0.98344 0.96251 1.21975 1.01554 0.94103 1.02458 1.22486 0.94046 0.96598 0.95710 1.67635 1.08221 1.34624 1.09634 1.22688 0.98233 0.87508 0.95961 0.90684 0.89997 0.88103 0.81559 0.84013 0.83681 0.76080 0.91660 0.92040 0.92031 0.90720 0.93491 0.94584 0.93234 0.94444 0.88070 0.85952 0.86046 0.84056 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.47 59.85 0.63 1.24 16 2 N -0.41 -4.65 3.16 -120.24 -0.38 -5.03 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.21 -2.07 10.81 -39.98 -0.43 -2.51 16 5 C -0.14 -1.62 10.35 -39.12 -0.41 -2.02 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.22 16 7 C 0.58 8.72 7.78 -12.85 -0.10 8.62 16 8 O -0.56 -9.65 14.79 5.20 0.08 -9.58 16 9 N -0.71 -9.85 5.54 -61.62 -0.34 -10.19 16 10 C 0.12 1.82 5.68 -4.04 -0.02 1.79 16 11 C -0.15 -2.44 5.65 -26.73 -0.15 -2.59 16 12 C 0.15 2.88 5.68 -4.04 -0.02 2.86 16 13 N -0.57 -12.63 2.41 -174.60 -0.42 -13.05 16 14 C -0.27 -6.60 9.44 -15.06 -0.14 -6.74 16 15 H 0.06 1.55 7.93 -52.49 -0.42 1.14 16 16 C 0.02 0.50 4.87 -17.43 -0.08 0.42 16 17 N -0.88 -22.84 11.65 55.49 0.65 -22.19 16 18 Si 0.89 20.31 29.61 -169.99 -5.03 15.27 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 C 0.18 3.83 5.43 -5.19 -0.03 3.80 16 23 C -0.12 -2.35 5.48 -104.48 -0.57 -2.93 16 24 C -0.08 -1.40 9.85 -39.27 -0.39 -1.78 16 25 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 26 C 0.07 1.11 11.18 -17.55 -0.20 0.92 16 27 N -0.49 -9.50 10.36 -13.25 -0.14 -9.64 16 28 C 0.11 2.31 10.88 -17.55 -0.19 2.12 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.10 1.09 6.57 -51.93 -0.34 0.75 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.42 7.45 -52.48 -0.39 1.03 16 35 H 0.40 4.93 7.37 -40.82 -0.30 4.63 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 41 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.04 0.74 8.02 -51.93 -0.42 0.32 16 44 H 0.10 2.41 5.61 -51.93 -0.29 2.12 16 45 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 48 H 0.15 3.24 8.06 -52.48 -0.42 2.81 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -30.19 405.30 -9.95 -40.14 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.20 Total: 9.41 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.27 Total: -1.25 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.63 Total: -60.11 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.19 -9.95 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230675175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.540 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds