Wall clock time and date at job start Wed Apr 1 2020 04:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35530 * 125.68132 * 2 1 4 4 C 1.35460 * 108.87083 * 180.29816 * 3 2 1 5 5 C 1.39824 * 107.86256 * 359.72883 * 4 3 2 6 6 C 1.37654 * 125.67437 * 179.83139 * 2 1 3 7 7 C 1.46673 * 126.23395 * 359.97269 * 6 2 1 8 8 O 1.21692 * 120.00215 * 3.87806 * 7 6 2 9 9 N 1.34780 * 120.00253 * 183.87032 * 7 6 2 10 10 C 1.46493 * 120.00287 * 175.65156 * 9 7 6 11 11 C 1.53005 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46920 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46967 * 180.02562 * 12 11 10 14 14 C 1.36942 * 119.99901 * 269.99986 * 13 12 11 15 15 H 1.07992 * 119.99906 * 322.18452 * 14 13 12 16 16 C 1.38813 * 119.99784 * 142.19150 * 14 13 12 17 17 N 1.31623 * 119.99946 * 336.73728 * 16 14 13 18 18 Si 1.86799 * 119.99755 * 156.74591 * 16 14 13 19 19 H 1.48504 * 109.47332 * 59.99594 * 18 16 14 20 20 H 1.48499 * 109.46836 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47108 * 299.99734 * 18 16 14 22 22 C 1.46503 * 120.00188 * 89.99511 * 13 12 11 23 23 C 1.50706 * 109.46797 * 87.66836 * 22 13 12 24 24 C 1.38679 * 120.41698 * 266.52115 * 23 22 13 25 25 C 1.38627 * 118.41888 * 180.24444 * 24 23 22 26 26 C 1.38225 * 119.15968 * 359.74716 * 25 24 23 27 27 N 1.31849 * 120.76692 * 0.02562 * 26 25 24 28 28 C 1.31887 * 121.72446 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47434 * 264.39261 * 1 2 3 30 30 H 1.09001 * 109.46771 * 24.38984 * 1 2 3 31 31 H 1.08996 * 109.46919 * 144.38500 * 1 2 3 32 32 H 1.07998 * 125.56752 * 0.06282 * 3 2 1 33 33 H 1.08005 * 126.06343 * 179.69274 * 4 3 2 34 34 H 1.08007 * 126.45460 * 180.02562 * 5 4 3 35 35 H 0.97006 * 119.99645 * 355.65997 * 9 7 6 36 36 H 1.09003 * 109.47125 * 60.00883 * 10 9 7 37 37 H 1.08994 * 109.47282 * 300.00653 * 10 9 7 38 38 H 1.09003 * 109.46722 * 60.00218 * 11 10 9 39 39 H 1.08998 * 109.46889 * 299.99891 * 11 10 9 40 40 H 1.09000 * 109.47020 * 59.99798 * 12 11 10 41 41 H 1.09006 * 109.46848 * 299.99759 * 12 11 10 42 42 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.47341 * 327.67112 * 22 13 12 44 44 H 1.08995 * 109.47434 * 207.66810 * 22 13 12 45 45 H 1.08000 * 120.78599 * 359.96667 * 24 23 22 46 46 H 1.07995 * 120.41631 * 179.72402 * 25 24 23 47 47 H 1.08000 * 119.61376 * 180.02562 * 26 25 24 48 48 H 1.08006 * 119.61350 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7091 -0.0067 5 6 3.5779 -0.6889 -0.0047 6 6 2.2678 -1.1182 0.0033 7 6 1.8123 -2.5124 0.0080 8 8 0.6238 -2.7646 -0.0620 9 7 2.7100 -3.5144 0.0896 10 6 2.2517 -4.9022 0.1904 11 6 3.4622 -5.8346 0.2697 12 6 2.9834 -7.2840 0.3743 13 7 4.1424 -8.1768 0.4509 14 6 4.6941 -8.6826 -0.6959 15 1 4.0577 -8.9724 -1.5189 16 6 6.0711 -8.8230 -0.8003 17 7 6.8662 -8.0880 -0.0520 18 14 6.7957 -10.0550 -2.0031 19 1 6.3643 -9.7129 -3.3823 20 1 8.2779 -10.0114 -1.9234 21 1 6.3210 -11.4196 -1.6601 22 6 4.7115 -8.5283 1.7543 23 6 3.9984 -9.7368 2.3042 24 6 2.9158 -9.5854 3.1576 25 6 2.2939 -10.7252 3.6430 26 6 2.7668 -11.9659 3.2589 27 7 3.7962 -12.0720 2.4418 28 6 4.4127 -11.0097 1.9615 29 1 -0.3634 -0.1004 1.0227 30 1 -0.3633 0.9360 -0.4244 31 1 -0.3633 -0.8354 -0.5984 32 1 1.9084 2.1235 0.0010 33 1 4.4133 1.3610 -0.0130 34 1 4.4583 -1.3146 -0.0083 35 1 3.6596 -3.3166 0.0818 36 1 1.6565 -5.1529 -0.6878 37 1 1.6435 -5.0197 1.0872 38 1 4.0570 -5.5837 1.1480 39 1 4.0706 -5.7171 -0.6269 40 1 2.3888 -7.5345 -0.5042 41 1 2.3747 -7.4018 1.2708 42 1 7.8285 -8.1859 -0.1253 43 1 4.5901 -7.6910 2.4415 44 1 5.7717 -8.7532 1.6393 45 1 2.5684 -8.6028 3.4408 46 1 1.4508 -10.6448 4.3131 47 1 2.2875 -12.8588 3.6323 48 1 5.2529 -11.1362 1.2948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230675175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:33 Heat of formation + Delta-G solvation = 47.649835 kcal Electronic energy + Delta-G solvation = -28641.705695 eV Core-core repulsion = 24697.266786 eV Total energy + Delta-G solvation = -3944.438909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.29324 -40.89373 -40.12361 -38.00848 -36.31048 -34.06625 -33.82259 -33.38660 -32.57119 -31.48069 -30.00607 -27.58625 -27.37143 -26.94376 -24.42950 -24.26195 -23.21635 -22.72931 -21.80028 -21.37880 -20.42960 -18.82373 -18.74555 -17.77524 -17.26983 -17.01326 -16.86845 -16.62712 -16.44949 -16.19446 -15.79745 -15.57464 -15.40342 -14.93065 -14.77750 -14.40205 -14.39268 -14.29719 -14.10781 -13.83421 -13.51785 -13.35996 -13.26315 -13.18061 -12.92352 -12.88456 -12.76266 -12.68281 -12.33297 -12.30284 -11.99331 -11.83830 -11.46092 -11.10930 -10.57872 -10.56617 -10.23879 -10.17909 -9.72932 -9.68698 -9.16988 -8.59643 -7.87686 -5.43537 0.37514 0.46792 0.52041 1.44456 1.49528 1.54326 1.70344 1.83352 2.36441 2.42393 2.50658 3.00639 3.24695 3.69981 3.73800 3.77590 3.98860 4.09789 4.16437 4.19955 4.20517 4.30186 4.34126 4.37448 4.38088 4.48949 4.54918 4.56308 4.68183 4.71726 4.73041 4.84627 4.92588 5.05094 5.06651 5.16956 5.27876 5.33584 5.35188 5.38328 5.48677 5.55260 5.70209 5.73706 5.81975 5.99913 6.00031 6.33766 6.46563 6.51301 7.13350 7.15309 7.19113 7.82180 8.35715 9.09762 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002404 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.065767 B =11642.154015 C =13290.911906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.421 5.421 3 C 0.026 3.974 4 C -0.223 4.223 5 C -0.141 4.141 6 C -0.091 4.091 7 C 0.582 3.418 8 O -0.589 6.589 9 N -0.708 5.708 10 C 0.136 3.864 11 C -0.123 4.123 12 C 0.152 3.848 13 N -0.584 5.584 14 C -0.268 4.268 15 H 0.047 0.953 16 C -0.014 4.014 17 N -0.900 5.900 18 Si 0.935 3.065 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.190 3.810 23 C -0.136 4.136 24 C -0.082 4.082 25 C -0.164 4.164 26 C 0.068 3.932 27 N -0.516 5.516 28 C 0.089 3.911 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.207 0.793 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.411 0.589 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.147 0.853 46 H 0.168 0.832 47 H 0.179 0.821 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 15.059 5.910 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.094 5.094 3 C -0.110 4.110 4 C -0.246 4.246 5 C -0.168 4.168 6 C -0.204 4.204 7 C 0.371 3.629 8 O -0.472 6.472 9 N -0.359 5.359 10 C 0.012 3.988 11 C -0.164 4.164 12 C 0.026 3.974 13 N -0.303 5.303 14 C -0.398 4.398 15 H 0.065 0.935 16 C -0.213 4.213 17 N -0.542 5.542 18 Si 0.764 3.236 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.064 3.936 23 C -0.141 4.141 24 C -0.109 4.109 25 C -0.184 4.184 26 C -0.090 4.090 27 N -0.226 5.226 28 C -0.067 4.067 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.196 0.804 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.879 14.011 5.611 18.605 hybrid contribution 1.014 0.002 -0.741 1.256 sum -9.865 14.013 4.870 17.816 Atomic orbital electron populations 1.22322 0.75254 1.05593 1.04191 1.44124 1.07606 1.04989 1.52674 1.22729 0.90411 0.92485 1.05392 1.21203 0.97309 0.94551 1.11527 1.21713 0.94303 0.96796 1.04006 1.20037 0.91567 0.87361 1.21402 1.17324 0.85289 0.84500 0.75755 1.90733 1.17499 1.85641 1.53365 1.45718 1.10278 1.06161 1.73735 1.21269 0.96990 0.79042 1.01474 1.22120 0.96256 0.96285 1.01715 1.20877 0.89291 0.87846 0.99414 1.43831 1.33966 1.51319 1.01171 1.19023 0.89185 1.36428 0.95207 0.93506 1.25545 0.97059 0.99335 0.99399 1.70101 1.03041 1.37870 1.43196 0.85866 0.77115 0.80567 0.80083 1.20409 1.21589 1.21079 1.19669 0.97918 0.90587 0.85443 1.22020 0.97949 0.97867 0.96257 1.21765 0.93733 1.00370 0.94996 1.22425 1.01742 0.92687 1.01526 1.23203 0.92744 0.98845 0.94203 1.67597 1.09683 1.34354 1.10929 1.22363 0.98652 0.88610 0.97094 0.90436 0.86365 0.90532 0.77603 0.81812 0.82925 0.75226 0.92463 0.91354 0.92293 0.93321 0.94173 0.92411 0.93722 0.93382 0.91374 0.83525 0.81498 0.80388 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.47 127.77 1.34 2.44 16 2 N -0.42 -8.80 3.16 -534.32 -1.69 -10.49 16 3 C 0.03 0.40 11.37 83.48 0.95 1.35 16 4 C -0.22 -3.90 10.81 22.01 0.24 -3.66 16 5 C -0.14 -3.09 10.35 22.57 0.23 -2.86 16 6 C -0.09 -2.34 6.89 40.35 0.28 -2.06 16 7 C 0.58 17.55 7.78 86.45 0.67 18.22 16 8 O -0.59 -20.77 14.79 -4.32 -0.06 -20.83 16 9 N -0.71 -19.79 5.54 -467.09 -2.59 -22.37 16 10 C 0.14 4.05 5.68 86.38 0.49 4.54 16 11 C -0.12 -4.20 5.65 30.60 0.17 -4.03 16 12 C 0.15 5.70 5.68 86.38 0.49 6.19 16 13 N -0.58 -26.39 2.41 -706.33 -1.70 -28.09 16 14 C -0.27 -13.83 9.44 84.03 0.79 -13.04 16 15 H 0.05 2.50 7.93 -2.91 -0.02 2.48 16 16 C -0.01 -0.73 4.87 84.86 0.41 -0.32 16 17 N -0.90 -48.61 11.65 21.65 0.25 -48.35 16 18 Si 0.93 43.30 29.61 68.60 2.03 45.33 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 C 0.19 8.18 5.43 85.63 0.46 8.64 16 23 C -0.14 -5.27 5.48 -19.77 -0.11 -5.38 16 24 C -0.08 -2.50 9.85 22.47 0.22 -2.28 16 25 C -0.16 -4.25 10.11 22.36 0.23 -4.02 16 26 C 0.07 1.98 11.18 84.69 0.95 2.93 16 27 N -0.52 -19.66 10.36 -195.85 -2.03 -21.68 16 28 C 0.09 3.72 10.88 84.67 0.92 4.65 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.08 1.67 6.57 -2.39 -0.02 1.65 16 32 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.15 2.91 7.45 -2.91 -0.02 2.89 16 35 H 0.41 10.15 7.37 -92.70 -0.68 9.47 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 41 H 0.06 1.90 8.07 -2.38 -0.02 1.88 16 42 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 43 H 0.05 1.90 8.02 -2.39 -0.02 1.88 16 44 H 0.07 3.41 5.61 -2.39 -0.01 3.40 16 45 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 46 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 47 H 0.18 3.80 8.06 -2.91 -0.02 3.78 16 48 H 0.12 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -68.68 405.30 3.23 -65.44 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.28 Total: 29.74 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 8.74 Total: 11.31 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -7.75 Total: -131.00 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.68 3.23 -65.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230675175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.094 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds