Wall clock time and date at job start Wed Apr 1 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99989 * 2 1 4 4 C 1.52999 * 109.47059 * 274.72318 * 3 2 1 5 5 H 1.09003 * 112.73967 * 316.18190 * 4 3 2 6 6 C 1.53497 * 113.46831 * 86.92877 * 4 3 2 7 7 C 1.53614 * 83.30758 * 140.83191 * 6 4 3 8 8 N 1.47071 * 88.00442 * 333.97889 * 7 6 4 9 9 C 1.36935 * 136.06156 * 207.10296 * 8 7 6 10 10 H 1.08000 * 120.00372 * 174.74017 * 9 8 7 11 11 C 1.38818 * 119.99732 * 354.74090 * 9 8 7 12 12 N 1.31619 * 119.99905 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47147 * 89.99451 * 13 11 9 15 15 H 1.48499 * 109.47331 * 210.00130 * 13 11 9 16 16 H 1.48508 * 109.47092 * 329.99972 * 13 11 9 17 17 C 1.34781 * 119.99934 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00003 * 175.02007 * 17 2 1 19 19 C 1.50701 * 120.00223 * 355.01852 * 17 2 1 20 20 C 1.50697 * 109.47321 * 179.97438 * 19 17 2 21 21 N 1.30239 * 126.10642 * 90.02478 * 20 19 17 22 22 N 1.39870 * 110.08546 * 180.02562 * 21 20 19 23 23 C 1.46499 * 125.46196 * 180.02562 * 22 21 20 24 24 C 1.37035 * 109.07940 * 359.97438 * 22 21 20 25 25 C 1.39284 * 133.85172 * 180.02562 * 24 22 21 26 26 C 1.36597 * 119.85300 * 179.97438 * 25 24 22 27 27 C 1.38963 * 120.81373 * 0.02562 * 26 25 24 28 28 C 1.36470 * 120.63139 * 0.03333 * 27 26 25 29 29 C 1.39953 * 119.63156 * 359.92996 * 28 27 26 30 30 H 1.08996 * 109.47070 * 269.99745 * 1 2 3 31 31 H 1.08994 * 109.47100 * 30.00326 * 1 2 3 32 32 H 1.09007 * 109.46860 * 150.00142 * 1 2 3 33 33 H 1.08996 * 109.47235 * 34.72335 * 3 2 1 34 34 H 1.08999 * 109.47169 * 154.72524 * 3 2 1 35 35 H 1.08995 * 114.20630 * 254.43456 * 6 4 3 36 36 H 1.08996 * 114.20643 * 27.26179 * 6 4 3 37 37 H 1.08996 * 113.50592 * 219.18985 * 7 6 4 38 38 H 1.08994 * 113.46937 * 88.76411 * 7 6 4 39 39 H 0.96997 * 119.99557 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46966 * 59.99792 * 19 17 2 41 41 H 1.09001 * 109.46666 * 300.00371 * 19 17 2 42 42 H 1.09004 * 109.47137 * 269.99993 * 23 22 21 43 43 H 1.09009 * 109.47243 * 29.99574 * 23 22 21 44 44 H 1.08994 * 109.47275 * 150.00030 * 23 22 21 45 45 H 1.07998 * 120.07755 * 359.93380 * 25 24 22 46 46 H 1.07998 * 119.59349 * 179.72156 * 26 25 24 47 47 H 1.08002 * 119.68481 * 180.02562 * 27 26 25 48 48 H 1.07992 * 120.18666 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3496 1.7698 -1.4376 5 1 2.6331 0.9786 -2.1318 6 6 1.1596 2.6100 -1.9213 7 6 2.2566 3.4514 -2.5908 8 7 3.1833 2.9759 -1.5524 9 6 4.3211 3.4486 -0.9548 10 1 4.7649 2.9060 -0.1331 11 6 4.9041 4.6252 -1.4050 12 7 4.3635 5.2861 -2.4067 13 14 6.4558 5.2704 -0.5894 14 1 7.6464 4.7092 -1.2769 15 1 6.4838 6.7523 -0.6811 16 1 6.4707 4.8625 0.8385 17 6 2.1389 -1.1672 0.0005 18 8 3.3483 -1.1693 -0.0907 19 6 1.3897 -2.4699 0.1144 20 6 2.3680 -3.6158 0.0904 21 7 2.9455 -4.1539 1.1264 22 7 3.7896 -5.1925 0.7204 23 6 4.6021 -6.0249 1.6110 24 6 3.7339 -5.3076 -0.6440 25 6 4.3500 -6.1490 -1.5674 26 6 4.0802 -6.0105 -2.8993 27 6 3.1961 -5.0372 -3.3490 28 6 2.5787 -4.1979 -2.4676 29 6 2.8381 -4.3205 -1.0978 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6477 2.0057 0.5853 34 1 3.1839 1.1187 0.4388 35 1 0.5025 2.0932 -2.6207 36 1 0.6239 3.1263 -1.1247 37 1 2.0693 4.5242 -2.5470 38 1 2.5152 3.1093 -3.5928 39 1 4.7711 6.1081 -2.7215 40 1 0.6979 -2.5655 -0.7225 41 1 0.8318 -2.4874 1.0507 42 1 5.5814 -5.5652 1.7448 43 1 4.1069 -6.1131 2.5781 44 1 4.7227 -7.0156 1.1728 45 1 5.0399 -6.9088 -1.2312 46 1 4.5636 -6.6622 -3.6120 47 1 2.9958 -4.9441 -4.4062 48 1 1.8927 -3.4444 -2.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234377852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:02 Heat of formation + Delta-G solvation = 123.803959 kcal Electronic energy + Delta-G solvation = -29566.340440 eV Core-core repulsion = 25625.203822 eV Total energy + Delta-G solvation = -3941.136618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.43713 -39.68878 -37.95974 -37.31090 -35.15254 -34.23514 -32.13796 -30.72600 -30.51153 -29.90728 -28.23825 -27.85697 -26.37837 -25.47982 -23.40391 -23.11013 -22.35787 -21.91540 -20.19819 -19.21430 -18.79184 -17.20518 -17.09865 -16.96203 -16.61415 -15.87084 -15.53602 -15.49921 -15.31457 -14.72358 -14.23570 -14.21660 -14.05536 -13.69351 -13.38879 -13.35097 -13.07122 -12.97548 -12.82924 -12.54850 -12.45552 -12.19001 -11.96411 -11.79790 -11.73730 -11.42526 -11.18762 -11.08069 -10.85412 -10.77360 -10.70922 -10.38908 -10.11838 -9.80211 -9.78498 -9.60745 -9.32933 -8.76342 -8.73349 -8.24621 -7.95451 -6.80540 -5.70690 -3.01906 0.83766 1.40517 2.19886 2.31647 2.82689 3.25465 3.44975 3.50171 3.51671 3.69889 4.16180 4.33674 4.47198 4.53142 4.68838 4.80694 4.85075 4.97257 5.02737 5.11518 5.19977 5.22753 5.25061 5.27095 5.34348 5.42755 5.46892 5.53062 5.57592 5.67707 5.74613 5.84938 5.87888 6.02919 6.19595 6.22685 6.34816 6.35272 6.40725 6.49320 6.59691 6.70038 6.73344 6.92442 6.92997 7.29522 7.46212 7.53786 7.60570 7.63233 8.05147 8.40436 9.11752 9.77673 10.71768 11.47608 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.002722 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.137169 B =10282.721919 C =10743.059303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.116 3.884 4 C 0.134 3.866 5 H 0.043 0.957 6 C -0.169 4.169 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.512 3.488 18 O -0.522 6.522 19 C -0.060 4.060 20 C 0.122 3.878 21 N -0.241 5.241 22 N -0.410 5.410 23 C 0.112 3.888 24 C 0.128 3.872 25 C -0.144 4.144 26 C -0.071 4.071 27 C -0.162 4.162 28 C -0.034 4.034 29 C -0.164 4.164 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.253 0.747 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -24.073 2.854 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.007 4.007 4 C 0.026 3.974 5 H 0.060 0.940 6 C -0.208 4.208 7 C 0.033 3.967 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.298 3.702 18 O -0.397 6.397 19 C -0.102 4.102 20 C -0.056 4.056 21 N -0.054 5.054 22 N -0.198 5.198 23 C -0.029 4.029 24 C 0.014 3.986 25 C -0.166 4.166 26 C -0.091 4.091 27 C -0.182 4.182 28 C -0.055 4.055 29 C -0.172 4.172 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.144 0.856 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.100 -23.906 4.303 25.939 hybrid contribution 1.028 0.299 -0.510 1.186 sum -8.072 -23.607 3.793 25.236 Atomic orbital electron populations 1.21844 0.79843 1.03463 1.01638 1.47844 1.06833 1.06285 1.73526 1.21864 0.97357 0.82352 0.99097 1.22406 0.90334 0.91094 0.93590 0.93973 1.23784 0.96293 1.00034 1.00645 1.21946 0.85162 0.98530 0.91107 1.45697 1.28276 1.16156 1.42501 1.18941 0.99876 1.04490 1.10804 0.90187 1.24789 0.99105 0.98278 0.98259 1.69843 1.40865 1.17850 1.28278 0.86148 0.83211 0.77855 0.78774 1.21624 1.21678 1.20574 1.20221 0.88033 0.84721 0.77240 1.90784 1.14038 1.86846 1.48013 1.20093 0.95888 0.88401 1.05811 1.22647 0.97480 0.96233 0.89215 1.76505 1.05049 1.00374 1.23472 1.48028 1.39180 1.29436 1.03109 1.21716 0.94227 0.92928 0.94025 1.18805 0.97701 0.97433 0.84669 1.19770 1.03540 1.01238 0.92069 1.20700 0.96545 0.97398 0.94490 1.20653 1.00052 0.97680 0.99777 1.20367 0.97628 0.97208 0.90267 1.19689 1.03384 0.99802 0.94275 0.92713 0.90266 0.91374 0.90510 0.89922 0.92751 0.90559 0.91629 0.95811 0.93753 0.86727 0.86975 0.91248 0.89507 0.89928 0.85979 0.85458 0.85563 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.23 59.85 0.61 1.31 16 2 N -0.61 -8.87 2.87 -181.57 -0.52 -9.39 16 3 C 0.12 2.16 5.37 -4.04 -0.02 2.14 16 4 C 0.13 2.82 4.31 -72.38 -0.31 2.51 16 5 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.17 -3.10 7.13 -26.16 -0.19 -3.29 16 7 C 0.16 3.80 7.28 -8.44 -0.06 3.74 16 8 N -0.60 -15.84 3.65 -176.77 -0.64 -16.49 16 9 C -0.21 -6.22 10.55 -15.06 -0.16 -6.38 16 10 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.11 11.64 55.49 0.65 -27.46 16 13 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 C 0.51 8.15 7.65 -10.98 -0.08 8.07 16 18 O -0.52 -11.17 15.59 5.55 0.09 -11.08 16 19 C -0.06 -0.69 4.97 -29.04 -0.14 -0.83 16 20 C 0.12 1.76 5.92 -80.19 -0.48 1.28 16 21 N -0.24 -3.68 12.40 34.84 0.43 -3.25 16 22 N -0.41 -5.47 4.05 -65.47 -0.27 -5.74 16 23 C 0.11 0.96 11.40 59.85 0.68 1.64 16 24 C 0.13 1.72 6.87 -84.18 -0.58 1.14 16 25 C -0.14 -1.53 9.97 -39.79 -0.40 -1.93 16 26 C -0.07 -0.68 9.96 -39.91 -0.40 -1.08 16 27 C -0.16 -1.67 9.97 -39.95 -0.40 -2.06 16 28 C -0.03 -0.41 10.07 -39.58 -0.40 -0.81 16 29 C -0.16 -2.30 6.33 -105.21 -0.67 -2.97 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16 32 H 0.07 0.45 6.48 -51.93 -0.34 0.11 16 33 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 34 H 0.08 1.82 7.35 -51.93 -0.38 1.44 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 37 H 0.07 1.71 7.37 -51.93 -0.38 1.33 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.11 0.92 7.25 -51.93 -0.38 0.55 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -38.81 399.42 -9.64 -48.45 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.29 Total: -1.24 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -3.08 Total: 2.15 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.35 Total: -62.33 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.81 -9.64 -48.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234377852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.252 kcal (2) G-P(sol) polarization free energy of solvation -38.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds