Wall clock time and date at job start Wed Apr 1 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99989 * 2 1 4 4 C 1.52999 * 109.47059 * 274.72318 * 3 2 1 5 5 H 1.09003 * 112.73967 * 316.18190 * 4 3 2 6 6 C 1.53497 * 113.46831 * 86.92877 * 4 3 2 7 7 C 1.53614 * 83.30758 * 140.83191 * 6 4 3 8 8 N 1.47071 * 88.00442 * 333.97889 * 7 6 4 9 9 C 1.36935 * 136.06156 * 207.10296 * 8 7 6 10 10 H 1.08000 * 120.00372 * 174.74017 * 9 8 7 11 11 C 1.38818 * 119.99732 * 354.74090 * 9 8 7 12 12 N 1.31619 * 119.99905 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47147 * 89.99451 * 13 11 9 15 15 H 1.48499 * 109.47331 * 210.00130 * 13 11 9 16 16 H 1.48508 * 109.47092 * 329.99972 * 13 11 9 17 17 C 1.34781 * 119.99934 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00003 * 175.02007 * 17 2 1 19 19 C 1.50701 * 120.00223 * 355.01852 * 17 2 1 20 20 C 1.50697 * 109.47321 * 179.97438 * 19 17 2 21 21 N 1.30239 * 126.10642 * 90.02478 * 20 19 17 22 22 N 1.39870 * 110.08546 * 180.02562 * 21 20 19 23 23 C 1.46499 * 125.46196 * 180.02562 * 22 21 20 24 24 C 1.37035 * 109.07940 * 359.97438 * 22 21 20 25 25 C 1.39284 * 133.85172 * 180.02562 * 24 22 21 26 26 C 1.36597 * 119.85300 * 179.97438 * 25 24 22 27 27 C 1.38963 * 120.81373 * 0.02562 * 26 25 24 28 28 C 1.36470 * 120.63139 * 0.03333 * 27 26 25 29 29 C 1.39953 * 119.63156 * 359.92996 * 28 27 26 30 30 H 1.08996 * 109.47070 * 269.99745 * 1 2 3 31 31 H 1.08994 * 109.47100 * 30.00326 * 1 2 3 32 32 H 1.09007 * 109.46860 * 150.00142 * 1 2 3 33 33 H 1.08996 * 109.47235 * 34.72335 * 3 2 1 34 34 H 1.08999 * 109.47169 * 154.72524 * 3 2 1 35 35 H 1.08995 * 114.20630 * 254.43456 * 6 4 3 36 36 H 1.08996 * 114.20643 * 27.26179 * 6 4 3 37 37 H 1.08996 * 113.50592 * 219.18985 * 7 6 4 38 38 H 1.08994 * 113.46937 * 88.76411 * 7 6 4 39 39 H 0.96997 * 119.99557 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46966 * 59.99792 * 19 17 2 41 41 H 1.09001 * 109.46666 * 300.00371 * 19 17 2 42 42 H 1.09004 * 109.47137 * 269.99993 * 23 22 21 43 43 H 1.09009 * 109.47243 * 29.99574 * 23 22 21 44 44 H 1.08994 * 109.47275 * 150.00030 * 23 22 21 45 45 H 1.07998 * 120.07755 * 359.93380 * 25 24 22 46 46 H 1.07998 * 119.59349 * 179.72156 * 26 25 24 47 47 H 1.08002 * 119.68481 * 180.02562 * 27 26 25 48 48 H 1.07992 * 120.18666 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3496 1.7698 -1.4376 5 1 2.6331 0.9786 -2.1318 6 6 1.1596 2.6100 -1.9213 7 6 2.2566 3.4514 -2.5908 8 7 3.1833 2.9759 -1.5524 9 6 4.3211 3.4486 -0.9548 10 1 4.7649 2.9060 -0.1331 11 6 4.9041 4.6252 -1.4050 12 7 4.3635 5.2861 -2.4067 13 14 6.4558 5.2704 -0.5894 14 1 7.6464 4.7092 -1.2769 15 1 6.4838 6.7523 -0.6811 16 1 6.4707 4.8625 0.8385 17 6 2.1389 -1.1672 0.0005 18 8 3.3483 -1.1693 -0.0907 19 6 1.3897 -2.4699 0.1144 20 6 2.3680 -3.6158 0.0904 21 7 2.9455 -4.1539 1.1264 22 7 3.7896 -5.1925 0.7204 23 6 4.6021 -6.0249 1.6110 24 6 3.7339 -5.3076 -0.6440 25 6 4.3500 -6.1490 -1.5674 26 6 4.0802 -6.0105 -2.8993 27 6 3.1961 -5.0372 -3.3490 28 6 2.5787 -4.1979 -2.4676 29 6 2.8381 -4.3205 -1.0978 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6477 2.0057 0.5853 34 1 3.1839 1.1187 0.4388 35 1 0.5025 2.0932 -2.6207 36 1 0.6239 3.1263 -1.1247 37 1 2.0693 4.5242 -2.5470 38 1 2.5152 3.1093 -3.5928 39 1 4.7711 6.1081 -2.7215 40 1 0.6979 -2.5655 -0.7225 41 1 0.8318 -2.4874 1.0507 42 1 5.5814 -5.5652 1.7448 43 1 4.1069 -6.1131 2.5781 44 1 4.7227 -7.0156 1.1728 45 1 5.0399 -6.9088 -1.2312 46 1 4.5636 -6.6622 -3.6120 47 1 2.9958 -4.9441 -4.4062 48 1 1.8927 -3.4444 -2.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234377852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:01 Heat of formation + Delta-G solvation = 97.926360 kcal Electronic energy + Delta-G solvation = -29567.462577 eV Core-core repulsion = 25625.203822 eV Total energy + Delta-G solvation = -3942.258755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.32655 -40.99255 -39.65787 -38.13496 -36.44137 -35.14371 -34.29054 -31.75041 -31.31301 -30.78327 -29.91368 -29.45974 -27.34242 -26.43219 -25.42465 -24.10195 -23.72783 -22.82528 -21.28045 -21.00633 -19.90586 -18.72418 -18.09995 -18.04668 -17.85524 -17.26722 -16.87571 -16.50743 -16.37014 -16.13066 -15.81639 -15.46410 -15.07291 -14.95524 -14.69318 -14.43695 -14.09334 -13.95884 -13.85403 -13.63436 -13.52148 -13.44442 -13.17835 -13.06988 -12.93550 -12.74080 -12.64020 -12.61986 -12.46018 -12.24529 -11.97481 -11.83776 -11.70251 -11.60261 -11.22608 -11.06796 -10.88091 -10.70796 -9.64379 -9.57251 -8.91364 -8.80880 -7.94224 -5.26021 -0.01635 0.56218 1.29507 1.39860 1.42610 1.45847 1.51016 1.64283 2.12657 2.46386 2.85904 3.26854 3.31343 3.48370 3.49363 3.64296 3.71709 3.86864 4.09132 4.15105 4.26284 4.28201 4.33456 4.33671 4.39398 4.46285 4.50479 4.54979 4.56419 4.61483 4.65532 4.74613 4.89763 4.94005 4.97598 5.01093 5.05945 5.09076 5.13535 5.23234 5.38934 5.48809 5.52392 5.54950 5.60712 5.76560 5.91512 5.93857 6.12545 6.47155 6.60043 6.90914 7.22058 7.58067 8.60216 9.23930 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.002722 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.137169 B =10282.721919 C =10743.059303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.605 5.605 3 C 0.132 3.868 4 C 0.134 3.866 5 H 0.024 0.976 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.633 5.633 9 C -0.225 4.225 10 H 0.072 0.928 11 C -0.064 4.064 12 N -0.951 5.951 13 Si 0.973 3.027 14 H -0.290 1.290 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.508 3.492 18 O -0.590 6.590 19 C -0.048 4.048 20 C 0.107 3.893 21 N -0.277 5.277 22 N -0.419 5.419 23 C 0.104 3.896 24 C 0.104 3.896 25 C -0.151 4.151 26 C -0.069 4.069 27 C -0.164 4.164 28 C -0.053 4.053 29 C -0.195 4.195 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.009 0.991 39 H 0.249 0.751 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.147 0.853 46 H 0.161 0.839 47 H 0.151 0.849 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 -25.974 2.680 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C 0.007 3.993 4 C 0.027 3.973 5 H 0.041 0.959 6 C -0.162 4.162 7 C 0.022 3.978 8 N -0.359 5.359 9 C -0.353 4.353 10 H 0.090 0.910 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.801 3.199 14 H -0.218 1.218 15 H -0.212 1.212 16 H -0.195 1.195 17 C 0.296 3.704 18 O -0.470 6.470 19 C -0.089 4.089 20 C -0.071 4.071 21 N -0.091 5.091 22 N -0.208 5.208 23 C -0.036 4.036 24 C -0.011 4.011 25 C -0.173 4.173 26 C -0.089 4.089 27 C -0.184 4.184 28 C -0.074 4.074 29 C -0.203 4.203 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.165 0.835 46 H 0.179 0.821 47 H 0.169 0.831 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.193 -25.840 4.148 28.464 hybrid contribution 1.670 0.793 -0.517 1.919 sum -9.524 -25.047 3.631 27.041 Atomic orbital electron populations 1.22275 0.75923 1.05601 1.03889 1.47892 1.08996 1.04351 1.72505 1.21408 0.96158 0.84676 0.97056 1.22490 0.90448 0.89545 0.94820 0.95875 1.23543 0.94710 0.97285 1.00668 1.22008 0.87409 0.97791 0.90548 1.46107 1.28153 1.18646 1.42981 1.19183 1.00888 1.04521 1.10747 0.91045 1.25578 1.02158 0.98735 0.99245 1.70006 1.42147 1.18106 1.29702 0.85160 0.79322 0.77173 0.78223 1.21780 1.21193 1.19543 1.21027 0.87466 0.86258 0.75662 1.90756 1.17212 1.87850 1.51161 1.20197 0.95285 0.84639 1.08804 1.23098 0.97899 0.96800 0.89309 1.76382 1.06265 1.01693 1.24719 1.48364 1.39228 1.29381 1.03795 1.22018 0.93648 0.93701 0.94268 1.19284 0.98403 0.98281 0.85112 1.20171 1.03616 1.01329 0.92166 1.21162 0.95800 0.97250 0.94735 1.21065 0.99381 0.97078 1.00842 1.20653 0.98621 0.98234 0.89853 1.20074 1.04432 1.00620 0.95192 0.90427 0.89585 0.87853 0.89015 0.94472 0.88370 0.88589 0.94403 0.97339 0.94174 0.82837 0.84244 0.91399 0.88691 0.87059 0.83479 0.82113 0.83123 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.23 127.77 1.31 2.22 16 2 N -0.60 -16.56 2.87 -846.76 -2.43 -19.00 16 3 C 0.13 4.87 5.37 86.38 0.46 5.34 16 4 C 0.13 5.64 4.31 41.79 0.18 5.82 16 5 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.12 -4.26 7.13 30.97 0.22 -4.04 16 7 C 0.15 7.19 7.28 83.22 0.61 7.80 16 8 N -0.63 -34.22 3.65 -713.17 -2.60 -36.82 16 9 C -0.23 -13.54 10.55 84.04 0.89 -12.65 16 10 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 11 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 12 N -0.95 -59.68 11.64 21.65 0.25 -59.43 16 13 Si 0.97 48.60 29.55 68.60 2.03 50.63 16 14 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 17 C 0.51 15.95 7.65 87.66 0.67 16.62 16 18 O -0.59 -26.42 15.59 -3.04 -0.05 -26.47 16 19 C -0.05 -1.02 4.97 29.10 0.14 -0.87 16 20 C 0.11 3.05 5.92 44.79 0.27 3.31 16 21 N -0.28 -8.62 12.40 -43.70 -0.54 -9.16 16 22 N -0.42 -11.29 4.05 -361.04 -1.46 -12.75 16 23 C 0.10 1.74 11.40 127.77 1.46 3.20 16 24 C 0.10 2.76 6.87 39.21 0.27 3.02 16 25 C -0.15 -2.99 9.97 22.14 0.22 -2.76 16 26 C -0.07 -1.17 9.96 22.06 0.22 -0.95 16 27 C -0.16 -3.07 9.97 22.03 0.22 -2.85 16 28 C -0.05 -1.23 10.07 22.27 0.22 -1.00 16 29 C -0.20 -5.48 6.33 -20.24 -0.13 -5.61 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.16 7.15 -2.39 -0.02 1.15 16 32 H 0.10 0.79 6.48 -2.38 -0.02 0.77 16 33 H 0.09 3.09 7.84 -2.39 -0.02 3.07 16 34 H 0.04 1.71 7.35 -2.39 -0.02 1.70 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.98 7.93 -2.39 -0.02 2.96 16 37 H 0.04 2.02 7.37 -2.39 -0.02 2.00 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.15 1.93 7.25 -2.38 -0.02 1.91 16 41 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 46 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 47 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 48 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -92.09 399.42 3.84 -88.25 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.96 Total: 11.55 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.69 Total: 13.20 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -6.79 Total: -137.16 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -92.09 3.84 -88.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234377852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.178 kcal (2) G-P(sol) polarization free energy of solvation -92.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds