Wall clock time and date at job start Wed Apr 1 2020 03:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36940 * 136.05968 * 321.99137 * 8 4 3 10 10 H 1.07996 * 119.99816 * 355.15134 * 9 8 4 11 11 C 1.38806 * 119.99880 * 175.14672 * 9 8 4 12 12 N 1.31621 * 120.00131 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99863 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47085 * 90.00307 * 13 11 9 15 15 H 1.48503 * 109.47027 * 210.00185 * 13 11 9 16 16 H 1.48489 * 109.47320 * 330.00155 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.47303 * 179.97438 * 19 17 2 21 21 N 1.30248 * 126.10819 * 269.69688 * 20 19 17 22 22 N 1.39873 * 110.08252 * 179.83929 * 21 20 19 23 23 C 1.46504 * 125.45929 * 180.15651 * 22 21 20 24 24 C 1.37037 * 109.07876 * 0.43090 * 22 21 20 25 25 C 1.39288 * 133.84982 * 179.75693 * 24 22 21 26 26 C 1.36589 * 119.85512 * 180.02562 * 25 24 22 27 27 C 1.38966 * 120.81217 * 359.95986 * 26 25 24 28 28 C 1.36464 * 120.63022 * 0.02562 * 27 26 25 29 29 C 1.39948 * 119.63585 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.47338 * 95.23610 * 1 2 3 31 31 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 32 32 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 33 33 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 34 34 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 35 35 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 36 36 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 37 37 H 1.08996 * 113.47291 * 271.29559 * 7 6 4 38 38 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 39 39 H 0.97004 * 119.99834 * 179.97438 * 12 11 9 40 40 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 41 41 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 42 42 H 1.08995 * 109.47271 * 270.31529 * 23 22 21 43 43 H 1.09002 * 109.46803 * 30.31456 * 23 22 21 44 44 H 1.08998 * 109.46719 * 150.30766 * 23 22 21 45 45 H 1.08005 * 120.06843 * 0.03878 * 25 24 22 46 46 H 1.07998 * 119.59161 * 179.97438 * 26 25 24 47 47 H 1.07996 * 119.68504 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.18188 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2738 -0.8101 10 1 2.2091 4.3618 0.0204 11 6 3.7145 5.3406 -1.1491 12 7 4.5486 5.2334 -2.1616 13 14 3.6354 6.9283 -0.1682 14 1 4.6025 6.8638 0.9569 15 1 3.9780 8.0728 -1.0504 16 1 2.2630 7.1107 0.3686 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0018 21 7 2.8585 -4.2043 -1.0547 22 7 3.7368 -5.2225 -0.6697 23 6 4.4806 -6.0937 -1.5830 24 6 3.7852 -5.2787 0.6986 25 6 4.4712 -6.0806 1.6078 26 6 4.3033 -5.8845 2.9491 27 6 3.4545 -4.8913 3.4226 28 6 2.7697 -4.0904 2.5555 29 6 2.9249 -4.2715 1.1765 30 1 -0.3634 -0.0938 -1.0234 31 1 -0.3633 -0.8394 0.5929 32 1 -0.3633 0.9331 0.4305 33 1 3.1872 1.1169 0.4307 34 1 1.6520 2.0031 0.5928 35 1 4.3946 0.9483 -1.5043 36 1 3.3410 0.4522 -2.9057 37 1 3.0847 2.7790 -3.6504 38 1 4.6765 3.0178 -2.8116 39 1 5.1220 5.9791 -2.3987 40 1 0.7591 -2.5303 0.8897 41 1 0.7585 -2.5298 -0.8902 42 1 3.8838 -6.9772 -1.8092 43 1 4.6952 -5.5543 -2.5056 44 1 5.4163 -6.3976 -1.1138 45 1 5.1346 -6.8555 1.2529 46 1 4.8370 -6.5090 3.6502 47 1 3.3350 -4.7525 4.4869 48 1 2.1117 -3.3210 2.9314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234377853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:05 Heat of formation + Delta-G solvation = 100.544821 kcal Electronic energy + Delta-G solvation = -29550.413546 eV Core-core repulsion = 25608.268336 eV Total energy + Delta-G solvation = -3942.145210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.29443 -40.98084 -39.61661 -38.10659 -36.43200 -35.10740 -34.26698 -31.71867 -31.28505 -30.75158 -29.94043 -29.42890 -27.35775 -26.42525 -25.41124 -24.11971 -23.72268 -22.80130 -21.27255 -20.97427 -19.87945 -18.76777 -18.05625 -18.01404 -17.79272 -17.23047 -16.86781 -16.45819 -16.34307 -16.08832 -15.83482 -15.47969 -14.99416 -14.92412 -14.84373 -14.21663 -14.07945 -13.94715 -13.79507 -13.72349 -13.50372 -13.45838 -13.14297 -13.00174 -12.96433 -12.72044 -12.67879 -12.58388 -12.47459 -12.22622 -11.94384 -11.79255 -11.69954 -11.65333 -11.22732 -11.04056 -10.84664 -10.66918 -9.61495 -9.56232 -8.91106 -8.77828 -7.88163 -5.23973 0.01716 0.59406 1.33212 1.45204 1.48721 1.48858 1.56539 1.69181 2.14275 2.49464 2.88860 3.31658 3.34560 3.42364 3.50969 3.69526 3.77164 3.87656 4.11108 4.17056 4.23739 4.30238 4.36165 4.39380 4.39935 4.43334 4.48439 4.50008 4.57984 4.64187 4.67875 4.69005 4.83335 4.84582 4.96855 4.98328 5.03952 5.08157 5.11340 5.22239 5.42185 5.48526 5.52353 5.55259 5.63088 5.73570 5.93816 5.94666 6.15437 6.49101 6.64205 6.89409 7.25777 7.60927 8.62163 9.29219 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002443 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.200990 B =11458.763959 C =11748.507863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.607 5.607 3 C 0.131 3.869 4 C 0.140 3.860 5 H 0.059 0.941 6 C -0.134 4.134 7 C 0.143 3.857 8 N -0.628 5.628 9 C -0.222 4.222 10 H 0.093 0.907 11 C -0.074 4.074 12 N -0.958 5.958 13 Si 0.982 3.018 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.262 1.262 17 C 0.513 3.487 18 O -0.577 6.577 19 C -0.050 4.050 20 C 0.108 3.892 21 N -0.277 5.277 22 N -0.419 5.419 23 C 0.104 3.896 24 C 0.104 3.896 25 C -0.152 4.152 26 C -0.069 4.069 27 C -0.164 4.164 28 C -0.052 4.052 29 C -0.194 4.194 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.038 0.962 39 H 0.247 0.753 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.146 0.854 46 H 0.160 0.840 47 H 0.152 0.848 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -27.258 9.729 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C 0.007 3.993 4 C 0.033 3.967 5 H 0.076 0.924 6 C -0.172 4.172 7 C 0.017 3.983 8 N -0.355 5.355 9 C -0.350 4.350 10 H 0.110 0.890 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.810 3.190 14 H -0.214 1.214 15 H -0.224 1.224 16 H -0.186 1.186 17 C 0.301 3.699 18 O -0.455 6.455 19 C -0.091 4.091 20 C -0.070 4.070 21 N -0.090 5.090 22 N -0.208 5.208 23 C -0.036 4.036 24 C -0.010 4.010 25 C -0.173 4.173 26 C -0.090 4.090 27 C -0.183 4.183 28 C -0.072 4.072 29 C -0.202 4.202 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.163 0.837 46 H 0.178 0.822 47 H 0.170 0.830 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.307 -27.077 8.387 29.538 hybrid contribution 0.558 1.359 0.406 1.524 sum -7.749 -25.718 8.793 28.263 Atomic orbital electron populations 1.22191 0.76503 1.05204 1.03535 1.47874 1.08675 1.04627 1.72853 1.21425 0.96863 0.84275 0.96756 1.22495 0.95016 0.84036 0.95109 0.92388 1.23357 0.98537 0.95769 0.99526 1.22104 0.96730 0.90143 0.89307 1.45891 1.52313 1.09170 1.28077 1.19343 1.17191 0.89335 1.09097 0.88983 1.25731 0.98834 1.02074 0.99971 1.70059 1.27580 1.31920 1.31107 0.85022 0.78305 0.78419 0.77254 1.21415 1.22355 1.18623 1.20864 0.87631 0.85852 0.75602 1.90739 1.16278 1.87737 1.50794 1.20184 0.95309 0.84939 1.08709 1.23065 0.98062 0.96682 0.89191 1.76426 1.06272 1.01775 1.24559 1.48369 1.39063 1.29864 1.03473 1.22003 0.95871 0.92514 0.93246 1.19286 0.98688 0.98205 0.84853 1.20164 1.03078 1.01764 0.92323 1.21153 0.96379 0.96939 0.94496 1.21053 0.99099 0.97223 1.00927 1.20645 0.98424 0.98422 0.89754 1.20057 1.04386 1.00635 0.95097 0.91296 0.87572 0.90120 0.92699 0.90288 0.92243 0.91263 0.96136 0.94309 0.94448 0.82912 0.84780 0.89561 0.89811 0.87922 0.83673 0.82202 0.83043 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.19 127.77 1.30 2.35 16 2 N -0.61 -16.45 2.87 -846.75 -2.43 -18.88 16 3 C 0.13 4.82 5.44 86.38 0.47 5.29 16 4 C 0.14 5.94 4.31 41.78 0.18 6.12 16 5 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 6 C -0.13 -5.98 8.03 30.99 0.25 -5.73 16 7 C 0.14 7.51 7.52 83.23 0.63 8.13 16 8 N -0.63 -33.64 3.65 -713.22 -2.60 -36.24 16 9 C -0.22 -12.59 10.55 84.03 0.89 -11.71 16 10 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 11 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 12 N -0.96 -60.49 11.43 21.65 0.25 -60.24 16 13 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 C 0.51 15.18 7.67 87.65 0.67 15.85 16 18 O -0.58 -23.60 15.54 -3.04 -0.05 -23.64 16 19 C -0.05 -1.02 4.92 29.10 0.14 -0.88 16 20 C 0.11 2.95 5.93 44.79 0.27 3.21 16 21 N -0.28 -8.41 12.40 -43.69 -0.54 -8.95 16 22 N -0.42 -10.93 4.05 -361.04 -1.46 -12.39 16 23 C 0.10 1.70 11.40 127.77 1.46 3.16 16 24 C 0.10 2.62 6.87 39.21 0.27 2.89 16 25 C -0.15 -2.77 9.97 22.14 0.22 -2.55 16 26 C -0.07 -1.04 9.96 22.06 0.22 -0.82 16 27 C -0.16 -2.66 9.97 22.03 0.22 -2.44 16 28 C -0.05 -1.07 10.07 22.27 0.22 -0.85 16 29 C -0.19 -5.07 6.33 -20.24 -0.13 -5.20 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.11 0.85 6.66 -2.39 -0.02 0.83 16 32 H 0.08 1.24 7.89 -2.39 -0.02 1.22 16 33 H 0.05 2.39 7.00 -2.39 -0.02 2.38 16 34 H 0.08 2.78 7.94 -2.39 -0.02 2.76 16 35 H 0.06 2.92 7.94 -2.39 -0.02 2.90 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.04 2.30 6.92 -2.39 -0.02 2.28 16 39 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 40 H 0.15 1.78 7.41 -2.38 -0.02 1.76 16 41 H 0.13 2.12 8.11 -2.39 -0.02 2.10 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 48 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -86.81 400.64 3.88 -82.93 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.95 Total: 15.82 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 7.74 Total: 12.98 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -6.79 Total: -136.70 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -86.81 3.88 -82.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234377853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.471 kcal (2) G-P(sol) polarization free energy of solvation -86.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds