Wall clock time and date at job start Wed Apr 1 2020 03:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46977 * 2 1 4 4 C 1.34231 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99971 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.46883 * 179.77390 * 6 4 3 8 8 C 1.46893 * 111.00098 * 294.76603 * 7 6 4 9 9 C 1.50699 * 109.47315 * 288.12285 * 8 7 6 10 10 H 1.08003 * 119.99911 * 2.74560 * 9 8 7 11 11 C 1.37879 * 120.00267 * 182.74045 * 9 8 7 12 12 N 1.31506 * 120.00096 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99767 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46919 * 89.99838 * 13 11 9 15 15 H 1.48499 * 109.47073 * 209.99959 * 13 11 9 16 16 H 1.48503 * 109.47302 * 330.00162 * 13 11 9 17 17 C 1.46902 * 110.99997 * 58.72392 * 7 6 4 18 18 C 1.53353 * 109.41839 * 168.75284 * 17 7 6 19 19 C 1.53194 * 109.14614 * 178.67429 * 18 17 7 20 20 N 1.46929 * 108.89593 * 54.57532 * 19 18 17 21 21 C 1.34777 * 120.62586 * 126.29301 * 20 19 18 22 22 O 1.21506 * 120.00217 * 0.02562 * 21 20 19 23 23 O 1.34641 * 119.99677 * 180.02562 * 21 20 19 24 24 C 1.45203 * 116.99882 * 180.02562 * 23 21 20 25 25 C 1.53002 * 109.46787 * 180.02562 * 24 23 21 26 26 C 1.46924 * 118.74068 * 306.32332 * 20 19 18 27 27 C 1.53042 * 109.46045 * 48.62527 * 17 7 6 28 28 H 1.08997 * 109.47843 * 300.00227 * 1 2 3 29 29 H 1.08999 * 109.47150 * 60.00223 * 1 2 3 30 30 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47140 * 239.99551 * 2 1 3 32 32 H 1.08999 * 109.47150 * 119.99777 * 2 1 3 33 33 H 1.09006 * 109.47074 * 59.77666 * 6 4 3 34 34 H 1.08993 * 109.46969 * 299.77734 * 6 4 3 35 35 H 1.08996 * 109.47053 * 48.13049 * 8 7 6 36 36 H 1.09004 * 109.46799 * 168.12425 * 8 7 6 37 37 H 0.97001 * 119.99873 * 179.97438 * 12 11 9 38 38 H 1.09004 * 109.45889 * 288.65572 * 17 7 6 39 39 H 1.08999 * 109.68390 * 58.71016 * 18 17 7 40 40 H 1.08999 * 109.47046 * 298.51000 * 18 17 7 41 41 H 1.08997 * 109.58434 * 294.71803 * 19 18 17 42 42 H 1.08994 * 109.58372 * 174.43675 * 19 18 17 43 43 H 1.08997 * 109.47059 * 299.99862 * 24 23 21 44 44 H 1.08999 * 109.46877 * 60.00097 * 24 23 21 45 45 H 1.09001 * 109.47090 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47207 * 299.99770 * 25 24 23 47 47 H 1.09002 * 109.46870 * 60.00199 * 25 24 23 48 48 H 1.09001 * 109.58703 * 173.39173 * 26 20 19 49 49 H 1.08997 * 109.58241 * 293.67375 * 26 20 19 50 50 H 1.08994 * 109.49888 * 61.43533 * 27 17 7 51 51 H 1.09003 * 109.52324 * 301.35127 * 27 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3876 2.8606 0.0062 8 6 5.8781 2.2619 1.2547 9 6 5.6916 3.2385 2.3873 10 1 5.2123 4.1894 2.2070 11 6 6.1328 2.9180 3.6536 12 7 5.9696 3.7700 4.6420 13 14 6.9624 1.2735 3.9653 14 1 8.4267 1.4109 3.7594 15 1 6.6971 0.8420 5.3613 16 1 6.4229 0.2604 3.0231 17 6 5.8809 2.1195 -1.1624 18 6 7.3998 2.2979 -1.2753 19 6 7.9120 1.4961 -2.4759 20 7 7.1643 1.9027 -3.6736 21 6 7.8130 2.3112 -4.7821 22 8 9.0274 2.3454 -4.7976 23 8 7.1151 2.6815 -5.8724 24 6 7.8795 3.1097 -7.0303 25 6 6.9219 3.4892 -8.1616 26 6 5.6962 1.8561 -3.6395 27 6 5.2056 2.6541 -2.4274 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5810 3.4715 0.8875 34 1 3.5883 3.4677 -0.8924 35 1 5.3186 1.3505 1.4649 36 1 6.9366 2.0229 1.1517 37 1 6.2797 3.5443 5.5330 38 1 5.6479 1.0611 -1.0460 39 1 7.8804 1.9379 -0.3656 40 1 7.6321 3.3534 -1.4168 41 1 7.7619 0.4317 -2.2953 42 1 8.9735 1.6957 -2.6225 43 1 8.4880 3.9741 -6.7645 44 1 8.5269 2.2968 -7.3591 45 1 7.4956 3.8110 -9.0307 46 1 6.3130 2.6251 -8.4274 47 1 6.2748 4.3023 -7.8324 48 1 5.2954 2.2956 -4.5529 49 1 5.3654 0.8209 -3.5564 50 1 5.4585 3.7063 -2.5579 51 1 4.1246 2.5484 -2.3357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256244784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:16 Heat of formation + Delta-G solvation = -151.258255 kcal Electronic energy + Delta-G solvation = -31934.036964 eV Core-core repulsion = 27641.371082 eV Total energy + Delta-G solvation = -4292.665882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 9.83 seconds Orbital eigenvalues (eV) -40.81205 -40.36591 -38.61637 -37.07872 -36.22796 -35.28686 -32.75274 -32.18843 -31.73647 -31.15557 -31.06426 -28.51062 -26.67290 -24.43402 -23.66178 -23.25955 -22.60296 -21.46670 -21.16480 -20.12930 -19.56541 -18.21209 -17.42645 -17.09721 -16.80746 -16.70929 -16.46187 -15.71298 -15.27704 -14.90630 -14.71659 -14.59437 -14.44572 -14.00792 -13.80146 -13.63026 -13.38271 -13.12108 -13.02623 -12.81272 -12.78303 -12.50190 -12.24195 -12.13097 -12.03527 -11.85165 -11.79211 -11.58834 -11.43556 -11.24399 -11.05788 -10.85056 -10.67304 -10.55603 -10.52048 -10.48701 -10.39902 -10.17379 -9.98266 -9.78918 -9.31485 -8.79743 -8.57364 -7.52448 -6.07601 -4.04727 2.05831 2.58378 2.78227 3.00877 3.28134 3.36031 3.41652 3.74633 4.38307 4.42241 4.70487 4.72806 4.84181 4.91085 4.93140 4.96308 5.04680 5.09059 5.11055 5.24173 5.26839 5.28089 5.35152 5.42506 5.51503 5.52284 5.56458 5.67099 5.67735 5.73926 5.76135 5.82966 5.89404 5.94475 5.97283 6.01358 6.08009 6.29087 6.30354 6.50975 6.58990 6.71392 6.80708 7.05567 7.29940 7.52586 7.69257 7.83996 8.16384 8.23271 8.58424 8.99379 9.54445 11.05226 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.003562 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.021566 B = 7858.126468 C = 9944.413486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.433 3.567 5 O -0.507 6.507 6 C 0.066 3.934 7 N -0.491 5.491 8 C 0.148 3.852 9 C -0.513 4.513 10 H 0.081 0.919 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.868 3.132 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.265 1.265 17 C 0.061 3.939 18 C -0.125 4.125 19 C 0.129 3.871 20 N -0.589 5.589 21 C 0.651 3.349 22 O -0.578 6.578 23 O -0.371 6.371 24 C 0.082 3.918 25 C -0.152 4.152 26 C 0.117 3.883 27 C -0.133 4.133 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.015 0.985 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 -4.819 -20.752 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.275 3.725 5 O -0.395 6.395 6 C -0.064 4.064 7 N -0.213 5.213 8 C 0.022 3.978 9 C -0.551 4.551 10 H 0.099 0.901 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.695 3.305 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.047 4.047 18 C -0.163 4.163 19 C 0.007 3.993 20 N -0.329 5.329 21 C 0.405 3.595 22 O -0.467 6.467 23 O -0.285 6.285 24 C 0.007 3.993 25 C -0.210 4.210 26 C -0.006 4.006 27 C -0.171 4.171 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.093 -4.594 -20.653 21.762 hybrid contribution 0.252 -1.858 0.507 1.942 sum -4.841 -6.451 -20.147 21.701 Atomic orbital electron populations 1.21783 0.93068 1.02520 1.03408 1.22897 0.95054 0.81406 1.02145 1.86585 1.25921 1.31516 1.84148 1.26056 0.80065 0.94886 0.71489 1.90562 1.59625 1.43794 1.45493 1.22302 0.89362 0.88823 1.05957 1.62540 1.03749 1.51390 1.03582 1.20463 0.95697 0.95203 0.86435 1.21040 1.39456 1.03636 0.90987 0.90096 1.24842 0.95607 0.96511 0.96083 1.69883 1.47371 1.35482 1.01035 0.86963 0.80510 0.85309 0.77754 1.20025 1.21252 1.18949 1.21997 0.94435 0.98416 0.89884 1.22050 0.95525 1.01510 0.97231 1.21743 0.97055 0.98570 0.81905 1.46995 1.07424 1.67332 1.11158 1.17975 0.83809 0.76889 0.80820 1.90973 1.12385 1.59839 1.83518 1.86224 1.40941 1.79008 1.22376 1.22918 0.93947 1.00014 0.82440 1.21822 1.00061 1.02684 0.96385 1.21718 0.78492 1.00808 0.99630 1.22120 1.00005 1.00995 0.94010 0.91434 0.91691 0.90726 0.91829 0.91541 0.85431 0.87659 0.96779 0.95284 0.92656 0.90877 0.89595 0.90558 0.91125 0.88553 0.91204 0.91351 0.90114 0.91558 0.91407 0.89098 0.91376 0.90350 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.63 10.22 -39.26 -0.40 -6.03 16 4 C 0.43 7.53 6.74 36.01 0.24 7.77 16 5 O -0.51 -9.92 11.52 -18.75 -0.22 -10.13 16 6 C 0.07 1.12 5.29 -4.98 -0.03 1.10 16 7 N -0.49 -9.45 4.52 -229.28 -1.04 -10.49 16 8 C 0.15 3.46 3.37 -4.98 -0.02 3.44 16 9 C -0.51 -14.04 9.12 -34.44 -0.31 -14.35 16 10 H 0.08 2.37 7.68 -52.48 -0.40 1.97 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 13 Si 0.87 21.56 27.41 -169.99 -4.66 16.90 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.52 6.62 56.52 0.37 -6.15 16 17 C 0.06 0.99 1.36 -67.51 -0.09 0.90 16 18 C -0.12 -1.97 5.39 -26.45 -0.14 -2.11 16 19 C 0.13 1.79 6.42 -3.71 -0.02 1.77 16 20 N -0.59 -8.02 2.97 -178.56 -0.53 -8.55 16 21 C 0.65 9.53 8.43 54.06 0.46 9.98 16 22 O -0.58 -9.96 15.54 -19.28 -0.30 -10.26 16 23 O -0.37 -4.56 8.86 -40.33 -0.36 -4.92 16 24 C 0.08 0.77 6.19 37.16 0.23 1.00 16 25 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 26 C 0.12 1.36 6.45 -3.71 -0.02 1.34 16 27 C -0.13 -1.73 4.75 -26.61 -0.13 -1.85 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.13 2.37 7.11 -51.93 -0.37 2.00 16 34 H 0.11 1.43 6.25 -51.93 -0.32 1.11 16 35 H 0.01 0.36 4.97 -51.93 -0.26 0.10 16 36 H 0.03 0.69 5.28 -51.93 -0.27 0.42 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.31 5.59 -51.93 -0.29 1.02 16 39 H 0.09 1.46 6.30 -51.93 -0.33 1.13 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.38 7.00 -51.93 -0.36 1.02 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.94 6.93 -51.93 -0.36 0.58 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.07 0.86 5.88 -51.93 -0.31 0.55 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -33.55 396.85 -8.04 -41.59 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.35 Total: 1.95 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 1.06 Total: 10.30 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.79 Total: -45.39 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.27 Total: -31.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.66 Total: 16.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.55 -8.04 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256244784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.666 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.83 seconds