Wall clock time and date at job start Wed Apr 1 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46977 * 2 1 4 4 C 1.34231 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99971 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.46883 * 179.77390 * 6 4 3 8 8 C 1.46893 * 111.00098 * 294.76603 * 7 6 4 9 9 C 1.50699 * 109.47315 * 288.12285 * 8 7 6 10 10 H 1.08003 * 119.99911 * 2.74560 * 9 8 7 11 11 C 1.37879 * 120.00267 * 182.74045 * 9 8 7 12 12 N 1.31506 * 120.00096 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99767 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46919 * 89.99838 * 13 11 9 15 15 H 1.48499 * 109.47073 * 209.99959 * 13 11 9 16 16 H 1.48503 * 109.47302 * 330.00162 * 13 11 9 17 17 C 1.46902 * 110.99997 * 58.72392 * 7 6 4 18 18 C 1.53353 * 109.41839 * 168.75284 * 17 7 6 19 19 C 1.53194 * 109.14614 * 178.67429 * 18 17 7 20 20 N 1.46929 * 108.89593 * 54.57532 * 19 18 17 21 21 C 1.34777 * 120.62586 * 126.29301 * 20 19 18 22 22 O 1.21506 * 120.00217 * 0.02562 * 21 20 19 23 23 O 1.34641 * 119.99677 * 180.02562 * 21 20 19 24 24 C 1.45203 * 116.99882 * 180.02562 * 23 21 20 25 25 C 1.53002 * 109.46787 * 180.02562 * 24 23 21 26 26 C 1.46924 * 118.74068 * 306.32332 * 20 19 18 27 27 C 1.53042 * 109.46045 * 48.62527 * 17 7 6 28 28 H 1.08997 * 109.47843 * 300.00227 * 1 2 3 29 29 H 1.08999 * 109.47150 * 60.00223 * 1 2 3 30 30 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47140 * 239.99551 * 2 1 3 32 32 H 1.08999 * 109.47150 * 119.99777 * 2 1 3 33 33 H 1.09006 * 109.47074 * 59.77666 * 6 4 3 34 34 H 1.08993 * 109.46969 * 299.77734 * 6 4 3 35 35 H 1.08996 * 109.47053 * 48.13049 * 8 7 6 36 36 H 1.09004 * 109.46799 * 168.12425 * 8 7 6 37 37 H 0.97001 * 119.99873 * 179.97438 * 12 11 9 38 38 H 1.09004 * 109.45889 * 288.65572 * 17 7 6 39 39 H 1.08999 * 109.68390 * 58.71016 * 18 17 7 40 40 H 1.08999 * 109.47046 * 298.51000 * 18 17 7 41 41 H 1.08997 * 109.58434 * 294.71803 * 19 18 17 42 42 H 1.08994 * 109.58372 * 174.43675 * 19 18 17 43 43 H 1.08997 * 109.47059 * 299.99862 * 24 23 21 44 44 H 1.08999 * 109.46877 * 60.00097 * 24 23 21 45 45 H 1.09001 * 109.47090 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47207 * 299.99770 * 25 24 23 47 47 H 1.09002 * 109.46870 * 60.00199 * 25 24 23 48 48 H 1.09001 * 109.58703 * 173.39173 * 26 20 19 49 49 H 1.08997 * 109.58241 * 293.67375 * 26 20 19 50 50 H 1.08994 * 109.49888 * 61.43533 * 27 17 7 51 51 H 1.09003 * 109.52324 * 301.35127 * 27 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3876 2.8606 0.0062 8 6 5.8781 2.2619 1.2547 9 6 5.6916 3.2385 2.3873 10 1 5.2123 4.1894 2.2070 11 6 6.1328 2.9180 3.6536 12 7 5.9696 3.7700 4.6420 13 14 6.9624 1.2735 3.9653 14 1 8.4267 1.4109 3.7594 15 1 6.6971 0.8420 5.3613 16 1 6.4229 0.2604 3.0231 17 6 5.8809 2.1195 -1.1624 18 6 7.3998 2.2979 -1.2753 19 6 7.9120 1.4961 -2.4759 20 7 7.1643 1.9027 -3.6736 21 6 7.8130 2.3112 -4.7821 22 8 9.0274 2.3454 -4.7976 23 8 7.1151 2.6815 -5.8724 24 6 7.8795 3.1097 -7.0303 25 6 6.9219 3.4892 -8.1616 26 6 5.6962 1.8561 -3.6395 27 6 5.2056 2.6541 -2.4274 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5810 3.4715 0.8875 34 1 3.5883 3.4677 -0.8924 35 1 5.3186 1.3505 1.4649 36 1 6.9366 2.0229 1.1517 37 1 6.2797 3.5443 5.5330 38 1 5.6479 1.0611 -1.0460 39 1 7.8804 1.9379 -0.3656 40 1 7.6321 3.3534 -1.4168 41 1 7.7619 0.4317 -2.2953 42 1 8.9735 1.6957 -2.6225 43 1 8.4880 3.9741 -6.7645 44 1 8.5269 2.2968 -7.3591 45 1 7.4956 3.8110 -9.0307 46 1 6.3130 2.6251 -8.4274 47 1 6.2748 4.3023 -7.8324 48 1 5.2954 2.2956 -4.5529 49 1 5.3654 0.8209 -3.5564 50 1 5.4585 3.7063 -2.5579 51 1 4.1246 2.5484 -2.3357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256244784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:09 Heat of formation + Delta-G solvation = -173.443039 kcal Electronic energy + Delta-G solvation = -31934.998968 eV Core-core repulsion = 27641.371082 eV Total energy + Delta-G solvation = -4293.627886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04105 -41.57585 -39.81523 -38.24751 -37.39719 -36.69037 -34.74816 -33.26480 -32.65931 -32.39440 -32.04511 -30.18882 -28.14749 -25.66925 -24.87770 -24.14375 -23.60765 -22.99897 -22.36887 -21.43611 -20.83422 -19.43547 -18.86088 -18.61989 -18.12413 -17.75854 -17.69800 -17.09342 -16.64546 -16.37661 -15.95659 -15.75327 -15.63093 -15.44985 -14.97029 -14.71886 -14.62904 -14.52800 -14.16807 -13.98909 -13.67822 -13.60146 -13.50314 -13.39075 -13.14064 -12.93532 -12.87799 -12.76153 -12.52569 -12.49396 -12.44150 -12.30308 -12.13476 -11.98595 -11.88404 -11.72228 -11.61378 -11.51540 -11.50691 -11.25604 -11.22894 -10.75624 -9.89929 -9.08958 -8.28777 -6.29226 1.06407 1.20659 1.30181 1.32576 1.43159 1.66578 1.79715 2.32154 2.79915 2.95628 3.07415 3.70939 3.77721 3.86861 4.00850 4.01364 4.04941 4.11963 4.12428 4.12878 4.26642 4.31497 4.36162 4.37656 4.45218 4.55640 4.62412 4.66761 4.70756 4.75525 4.79937 4.84839 4.90426 4.93984 4.96174 4.99951 5.06665 5.12734 5.15524 5.17343 5.32631 5.37792 5.40599 5.56705 5.59103 5.91290 6.17367 6.22837 6.54901 6.76596 6.81609 7.14652 7.33435 8.87249 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.003562 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.021566 B = 7858.126468 C = 9944.413486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.437 3.563 5 O -0.530 6.530 6 C 0.065 3.935 7 N -0.502 5.502 8 C 0.163 3.837 9 C -0.510 4.510 10 H 0.050 0.950 11 C 0.016 3.984 12 N -0.943 5.943 13 Si 0.930 3.070 14 H -0.264 1.264 15 H -0.283 1.283 16 H -0.261 1.261 17 C 0.064 3.936 18 C -0.120 4.120 19 C 0.136 3.864 20 N -0.589 5.589 21 C 0.649 3.351 22 O -0.610 6.610 23 O -0.368 6.368 24 C 0.072 3.928 25 C -0.144 4.144 26 C 0.121 3.879 27 C -0.124 4.124 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.145 0.855 35 H 0.001 0.999 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -6.049 -23.227 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.281 6.281 4 C 0.280 3.720 5 O -0.420 6.420 6 C -0.065 4.065 7 N -0.224 5.224 8 C 0.036 3.964 9 C -0.549 4.549 10 H 0.068 0.932 11 C -0.182 4.182 12 N -0.584 5.584 13 Si 0.754 3.246 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.186 1.186 17 C -0.044 4.044 18 C -0.159 4.159 19 C 0.015 3.985 20 N -0.329 5.329 21 C 0.404 3.596 22 O -0.502 6.502 23 O -0.281 6.281 24 C -0.002 4.002 25 C -0.201 4.201 26 C -0.001 4.001 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.162 0.838 35 H 0.019 0.981 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.129 0.871 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.286 -5.818 -23.163 24.696 hybrid contribution 0.513 -1.417 1.211 1.933 sum -5.773 -7.235 -21.952 23.823 Atomic orbital electron populations 1.21804 0.90234 1.04261 1.03737 1.23225 0.97262 0.79838 1.01962 1.86567 1.24584 1.33372 1.83576 1.25879 0.80664 0.94488 0.70994 1.90554 1.60323 1.44434 1.46694 1.22313 0.88151 0.89168 1.06875 1.62406 1.05351 1.51700 1.02921 1.20098 0.95500 0.93506 0.87286 1.21295 1.38067 1.03106 0.92400 0.93188 1.25632 0.96567 0.99968 0.96018 1.70014 1.49161 1.37623 1.01598 0.85971 0.79919 0.81047 0.77634 1.18870 1.20820 1.18577 1.22038 0.94766 0.97618 0.90015 1.21969 0.95409 1.01031 0.97476 1.21599 0.96713 0.98847 0.81378 1.47053 1.08231 1.66876 1.10737 1.18117 0.83513 0.76550 0.81432 1.90949 1.13871 1.61175 1.84165 1.86241 1.40961 1.78615 1.22331 1.23241 0.94894 0.99763 0.82274 1.21833 0.99702 1.02886 0.95652 1.21823 0.77187 1.01440 0.99686 1.22055 1.00572 1.00925 0.92673 0.91899 0.90545 0.88264 0.90837 0.92984 0.87484 0.83806 0.98125 0.95453 0.92529 0.91938 0.91202 0.91669 0.89853 0.89191 0.91748 0.91419 0.87924 0.91057 0.91257 0.87100 0.90234 0.90473 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.36 -10.75 10.22 -51.42 -0.53 -11.28 16 4 C 0.44 14.78 6.74 71.24 0.48 15.26 16 5 O -0.53 -20.34 11.52 21.97 0.25 -20.09 16 6 C 0.06 2.17 5.29 85.56 0.45 2.62 16 7 N -0.50 -19.29 4.52 -879.30 -3.98 -23.27 16 8 C 0.16 7.72 3.37 85.56 0.29 8.01 16 9 C -0.51 -28.70 9.12 25.60 0.23 -28.47 16 10 H 0.05 3.05 7.68 -2.91 -0.02 3.03 16 11 C 0.02 0.92 5.47 84.66 0.46 1.39 16 12 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 13 Si 0.93 45.06 27.41 68.60 1.88 46.94 16 14 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.26 -12.43 6.62 99.48 0.66 -11.77 16 17 C 0.06 2.01 1.36 45.05 0.06 2.07 16 18 C -0.12 -3.77 5.39 30.78 0.17 -3.60 16 19 C 0.14 3.68 6.42 86.36 0.55 4.24 16 20 N -0.59 -15.06 2.97 -949.26 -2.82 -17.89 16 21 C 0.65 18.16 8.43 129.79 1.09 19.26 16 22 O -0.61 -20.74 15.54 19.82 0.31 -20.43 16 23 O -0.37 -8.33 8.86 -55.50 -0.49 -8.82 16 24 C 0.07 1.26 6.19 71.98 0.45 1.71 16 25 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 26 C 0.12 2.49 6.45 86.36 0.56 3.05 16 27 C -0.12 -2.93 4.75 30.67 0.15 -2.79 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 32 H 0.05 1.38 8.13 -2.39 -0.02 1.37 16 33 H 0.11 4.06 7.11 -2.38 -0.02 4.04 16 34 H 0.14 3.62 6.25 -2.39 -0.01 3.60 16 35 H 0.00 0.05 4.97 -2.39 -0.01 0.04 16 36 H 0.03 1.31 5.28 -2.38 -0.01 1.30 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.06 2.17 5.59 -2.38 -0.01 2.16 16 39 H 0.07 2.40 6.30 -2.39 -0.02 2.38 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 2.57 7.00 -2.39 -0.02 2.55 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.11 1.90 6.93 -2.39 -0.02 1.89 16 49 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.09 1.80 5.88 -2.39 -0.01 1.79 16 Total: -1.00 -74.03 396.85 2.67 -71.36 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.88 Total: 19.45 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.87 Total: 22.10 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -6.50 Total: -99.23 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -0.46 Total: -60.62 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -74.03 2.67 -71.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256244784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.078 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds