Wall clock time and date at job start Wed Apr 1 2020 03:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45207 * 109.46768 * 2 1 4 4 C 1.34227 * 116.99674 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00379 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47589 * 179.97438 * 6 4 3 8 8 C 1.46904 * 110.99658 * 66.04733 * 7 6 4 9 9 C 1.50703 * 109.47185 * 199.99037 * 8 7 6 10 10 H 1.08004 * 119.99548 * 5.02048 * 9 8 7 11 11 C 1.37876 * 120.00360 * 185.02170 * 9 8 7 12 12 N 1.31518 * 119.99613 * 5.08843 * 11 9 8 13 13 Si 1.86800 * 120.00062 * 185.08910 * 11 9 8 14 14 H 1.48500 * 109.47016 * 94.99183 * 13 11 9 15 15 H 1.48496 * 109.46976 * 214.99362 * 13 11 9 16 16 H 1.48493 * 109.47155 * 334.99247 * 13 11 9 17 17 C 1.46907 * 111.00241 * 189.99880 * 7 6 4 18 18 H 1.08996 * 109.47083 * 189.16714 * 17 7 6 19 19 C 1.52993 * 109.47057 * 309.17314 * 17 7 6 20 20 C 1.53001 * 109.46661 * 69.17174 * 17 7 6 21 21 C 1.50694 * 109.47364 * 63.96944 * 20 17 7 22 22 O 1.21288 * 119.99985 * 5.42091 * 21 20 17 23 23 N 1.34773 * 120.00276 * 185.41297 * 21 20 17 24 24 C 1.47151 * 120.98333 * 174.87841 * 23 21 20 25 25 C 1.53292 * 108.38739 * 230.51417 * 24 23 21 26 26 O 1.42965 * 109.22231 * 307.70088 * 25 24 23 27 27 C 1.42959 * 114.16707 * 62.57931 * 26 25 24 28 28 C 1.47152 * 120.98167 * 354.86307 * 23 21 20 29 29 H 1.09000 * 109.47149 * 300.00593 * 1 2 3 30 30 H 1.09002 * 109.46823 * 60.00227 * 1 2 3 31 31 H 1.08995 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47161 * 239.99939 * 2 1 3 33 33 H 1.08995 * 109.46906 * 119.99369 * 2 1 3 34 34 H 1.09005 * 109.47084 * 59.99667 * 6 4 3 35 35 H 1.09001 * 109.47019 * 300.00311 * 6 4 3 36 36 H 1.08995 * 109.47481 * 319.99448 * 8 7 6 37 37 H 1.09006 * 109.47083 * 79.99443 * 8 7 6 38 38 H 0.96998 * 119.99941 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.47198 * 299.99798 * 19 17 7 40 40 H 1.08996 * 109.47665 * 59.99756 * 19 17 7 41 41 H 1.09000 * 109.46947 * 179.97438 * 19 17 7 42 42 H 1.09006 * 109.46880 * 303.97229 * 20 17 7 43 43 H 1.09002 * 109.46752 * 183.97221 * 20 17 7 44 44 H 1.09001 * 109.67944 * 110.79342 * 24 23 21 45 45 H 1.08994 * 109.68578 * 350.24057 * 24 23 21 46 46 H 1.08997 * 109.51542 * 187.77322 * 25 24 23 47 47 H 1.09002 * 109.55207 * 67.64551 * 25 24 23 48 48 H 1.09003 * 109.51540 * 57.34480 * 27 26 25 49 49 H 1.09004 * 109.51444 * 177.49126 * 27 26 25 50 50 H 1.09005 * 109.68157 * 249.20732 * 28 23 21 51 51 H 1.09007 * 109.68075 * 9.75575 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3877 2.8606 0.0014 8 6 5.8854 2.2760 -1.2511 9 6 7.2868 1.7621 -1.0437 10 1 7.7304 1.7860 -0.0593 11 6 8.0025 1.2615 -2.1105 12 7 7.5022 1.3239 -3.3252 13 14 9.6826 0.4945 -1.8305 14 1 9.5383 -0.9770 -1.6930 15 1 10.5647 0.7997 -2.9855 16 1 10.2805 1.0513 -0.5905 17 6 5.9840 4.1820 0.2390 18 1 7.0602 4.1299 0.0745 19 6 5.3694 5.1995 -0.7242 20 6 5.7087 4.6138 1.6808 21 6 6.3962 3.6656 2.6291 22 8 7.1222 2.7956 2.1965 23 7 6.2046 3.7844 3.9578 24 6 6.7741 2.8042 4.8960 25 6 5.6592 2.3288 5.8345 26 8 5.0170 3.4659 6.4165 27 6 4.3709 4.3211 5.4705 28 6 5.4199 4.8985 4.5133 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.5844 3.4701 0.8895 35 1 3.5852 3.4691 -0.8905 36 1 5.2370 1.4527 -1.5507 37 1 5.8894 3.0375 -2.0311 38 1 8.0056 0.9714 -4.0757 39 1 5.5655 4.8918 -1.7514 40 1 4.2932 5.2516 -0.5597 41 1 5.8115 6.1800 -0.5476 42 1 4.6347 4.5977 1.8661 43 1 6.0894 5.6232 1.8367 44 1 7.5689 3.2714 5.4773 45 1 7.1743 1.9552 4.3419 46 1 6.0863 1.7089 6.6227 47 1 4.9297 1.7483 5.2697 48 1 3.6370 3.7482 4.9036 49 1 3.8713 5.1344 5.9967 50 1 6.0784 5.5766 5.0562 51 1 4.9233 5.4364 3.7056 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256350182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:00 Heat of formation + Delta-G solvation = -170.438638 kcal Electronic energy + Delta-G solvation = -32497.852251 eV Core-core repulsion = 28204.354646 eV Total energy + Delta-G solvation = -4293.497606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -41.61178 -41.15292 -39.60076 -38.59143 -37.35601 -35.62444 -34.86163 -33.15520 -32.65634 -32.14496 -30.11889 -29.48346 -28.00826 -27.20946 -25.06930 -24.36150 -24.05625 -23.02088 -22.27552 -20.65173 -19.72951 -18.87308 -18.41280 -18.16784 -17.64733 -17.49297 -17.32776 -16.75022 -16.63063 -16.53613 -16.04317 -15.90983 -15.58640 -15.49698 -15.33776 -14.76423 -14.60897 -14.30983 -14.07153 -13.93871 -13.80417 -13.59990 -13.47487 -13.17453 -13.04560 -12.88118 -12.74594 -12.71056 -12.56352 -12.49176 -12.44446 -12.29231 -12.22739 -11.86021 -11.69497 -11.57145 -11.50298 -11.26356 -11.15795 -11.08394 -10.52812 -10.52231 -9.45315 -8.87052 -8.13556 -6.15672 1.31402 1.31723 1.34692 1.47406 1.66000 1.89534 2.02592 2.42120 2.90102 3.18000 3.27508 3.68703 3.82687 3.84659 3.88971 3.97659 4.04368 4.11695 4.15504 4.20455 4.26621 4.31058 4.32503 4.34433 4.42137 4.54814 4.59024 4.68975 4.70369 4.72056 4.80154 4.85456 4.87369 4.92510 4.96754 5.00691 5.05931 5.14273 5.21961 5.42328 5.48173 5.50879 5.58643 5.79232 6.12985 6.18031 6.44264 6.52486 6.63739 6.95362 7.01069 7.48196 7.50379 8.96802 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.004821 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3918.858584 B = 5806.183577 C = 7973.414244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 O -0.361 6.361 4 C 0.450 3.550 5 O -0.519 6.519 6 C 0.059 3.941 7 N -0.520 5.520 8 C 0.214 3.786 9 C -0.491 4.491 10 H 0.055 0.945 11 C -0.002 4.002 12 N -0.938 5.938 13 Si 0.954 3.046 14 H -0.282 1.282 15 H -0.275 1.275 16 H -0.275 1.275 17 C 0.100 3.900 18 H 0.056 0.944 19 C -0.176 4.176 20 C -0.119 4.119 21 C 0.505 3.495 22 O -0.553 6.553 23 N -0.629 5.629 24 C 0.077 3.923 25 C 0.058 3.942 26 O -0.393 6.393 27 C 0.042 3.958 28 C 0.071 3.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.083 0.917 36 H -0.002 1.002 37 H -0.020 1.020 38 H 0.259 0.741 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.136 0.864 50 H 0.087 0.913 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 11.404 17.113 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 O -0.278 6.278 4 C 0.292 3.708 5 O -0.406 6.406 6 C -0.069 4.069 7 N -0.245 5.245 8 C 0.089 3.911 9 C -0.530 4.530 10 H 0.073 0.927 11 C -0.198 4.198 12 N -0.581 5.581 13 Si 0.781 3.219 14 H -0.209 1.209 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.008 4.008 18 H 0.074 0.926 19 C -0.235 4.235 20 C -0.158 4.158 21 C 0.294 3.706 22 O -0.428 6.428 23 N -0.367 5.367 24 C -0.046 4.046 25 C -0.019 4.019 26 O -0.311 6.311 27 C -0.035 4.035 28 C -0.051 4.051 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.016 0.984 37 H -0.002 1.002 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.150 0.850 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.139 0.861 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.153 0.847 50 H 0.105 0.895 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.143 10.288 17.273 24.581 hybrid contribution 1.178 -0.936 -1.412 2.063 sum -12.965 9.352 15.861 22.520 Atomic orbital electron populations 1.21786 0.89295 1.04372 1.04031 1.23217 0.97653 0.79749 1.01587 1.86457 1.23755 1.33175 1.84452 1.24311 0.80513 0.93748 0.72219 1.90753 1.61023 1.44353 1.44488 1.21763 0.90751 0.89099 1.05303 1.61858 1.02017 1.22719 1.37870 1.19348 0.94467 0.92323 0.85012 1.21502 0.99523 1.37779 0.94157 0.92703 1.25721 1.01810 0.97370 0.94944 1.70070 1.40103 1.48748 0.99152 0.85596 0.80219 0.78569 0.77542 1.20863 1.19985 1.20035 1.21377 0.99167 0.86342 0.93959 0.92568 1.22391 1.02373 0.99905 0.98784 1.21849 1.02763 0.99505 0.91724 1.21264 0.81376 0.85440 0.82537 1.90844 1.38562 1.36514 1.76894 1.48331 1.54636 1.28366 1.05318 1.22153 0.97098 0.93628 0.91733 1.22904 0.93702 0.88135 0.97185 1.87926 1.71647 1.37342 1.34231 1.23225 0.93700 0.94921 0.91691 1.22688 0.94559 0.88533 0.99309 0.90446 0.91132 0.88350 0.93102 0.92042 0.84093 0.89904 0.98446 1.00210 0.93204 0.94939 0.89823 0.89457 0.86305 0.84983 0.90310 0.91348 0.86125 0.93785 0.92856 0.84672 0.89495 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.29 71.98 0.74 -1.64 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -11.50 10.22 -51.39 -0.53 -12.02 16 4 C 0.45 17.78 7.47 71.23 0.53 18.32 16 5 O -0.52 -26.45 14.29 21.94 0.31 -26.14 16 6 C 0.06 2.00 4.40 85.56 0.38 2.38 16 7 N -0.52 -22.65 3.30 -880.07 -2.90 -25.55 16 8 C 0.21 12.12 4.16 85.56 0.36 12.47 16 9 C -0.49 -31.15 8.55 25.60 0.22 -30.93 16 10 H 0.05 3.67 7.08 -2.91 -0.02 3.65 16 11 C 0.00 -0.16 5.45 84.65 0.46 0.31 16 12 N -0.94 -60.71 13.28 21.45 0.28 -60.42 16 13 Si 0.95 50.52 29.54 68.60 2.03 52.55 16 14 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 15 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 17 C 0.10 3.54 1.76 44.91 0.08 3.62 16 18 H 0.06 2.55 7.17 -2.39 -0.02 2.54 16 19 C -0.18 -4.87 8.42 71.98 0.61 -4.27 16 20 C -0.12 -2.86 3.53 29.85 0.11 -2.76 16 21 C 0.50 16.42 7.51 87.66 0.66 17.08 16 22 O -0.55 -25.84 14.19 -3.05 -0.04 -25.88 16 23 N -0.63 -15.48 3.02 -817.36 -2.47 -17.95 16 24 C 0.08 1.95 6.62 86.35 0.57 2.52 16 25 C 0.06 1.19 6.98 72.08 0.50 1.70 16 26 O -0.39 -7.55 10.74 -148.98 -1.60 -9.15 16 27 C 0.04 0.55 6.98 72.08 0.50 1.05 16 28 C 0.07 0.98 6.57 86.35 0.57 1.55 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.56 8.13 -2.39 -0.02 1.55 16 33 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 34 H 0.14 3.36 6.18 -2.38 -0.01 3.35 16 35 H 0.08 2.55 6.83 -2.39 -0.02 2.54 16 36 H 0.00 -0.16 5.86 -2.39 -0.01 -0.17 16 37 H -0.02 -1.16 6.35 -2.38 -0.02 -1.17 16 38 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 39 H 0.03 1.14 6.61 -2.39 -0.02 1.13 16 40 H 0.08 1.76 6.54 -2.39 -0.02 1.74 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.12 2.00 5.81 -2.38 -0.01 1.99 16 43 H 0.13 2.12 8.04 -2.39 -0.02 2.10 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 2.20 7.12 -2.39 -0.02 2.18 16 46 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.12 0.99 6.02 -2.38 -0.01 0.98 16 Total: -1.00 -93.02 400.40 2.74 -90.29 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.92 Total: 11.02 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 6.73 Total: 23.26 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -5.08 Total: -103.92 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: -1.86 Total: -73.20 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.03 Total: 52.55 kcal Total: -93.02 2.74 -90.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256350182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.152 kcal (2) G-P(sol) polarization free energy of solvation -93.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds