Wall clock time and date at job start Wed Apr 1 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47147 * 2 1 4 4 C 1.42899 * 114.00115 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47525 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47032 * 64.99609 * 5 4 3 7 7 C 1.42900 * 114.00253 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.88444 * 32.42654 * 7 6 5 9 9 C 1.55405 * 111.03994 * 156.23142 * 7 6 5 10 10 C 1.54325 * 102.82616 * 153.47156 * 9 7 6 11 11 N 1.47018 * 107.40412 * 337.97548 * 10 9 7 12 12 C 1.34777 * 125.64981 * 178.82520 * 11 10 9 13 13 O 1.21346 * 120.00030 * 180.02562 * 12 11 10 14 14 C 1.49450 * 119.99901 * 0.03117 * 12 11 10 15 15 O 1.21353 * 119.99750 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99901 * 180.02562 * 14 12 11 17 17 C 1.46504 * 119.99545 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.46973 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47636 * 179.97438 * 18 17 16 20 20 C 1.50692 * 109.47524 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00194 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00241 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99712 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47206 * 90.00097 * 24 22 20 26 26 H 1.48501 * 109.47089 * 210.00111 * 24 22 20 27 27 H 1.48501 * 109.46975 * 330.00094 * 24 22 20 28 28 C 1.47426 * 108.70517 * 358.86539 * 11 10 9 29 29 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46964 * 300.00490 * 1 2 3 31 31 H 1.08998 * 109.47134 * 60.00410 * 1 2 3 32 32 H 1.08996 * 109.46964 * 239.99510 * 2 1 3 33 33 H 1.09005 * 109.46917 * 119.99251 * 2 1 3 34 34 H 1.09007 * 109.47301 * 59.99903 * 4 3 2 35 35 H 1.08996 * 109.47115 * 299.99577 * 4 3 2 36 36 H 1.09002 * 109.46744 * 305.00292 * 5 4 3 37 37 H 1.08996 * 109.47076 * 185.00204 * 5 4 3 38 38 H 1.09000 * 110.69068 * 35.18415 * 9 7 6 39 39 H 1.09002 * 110.85092 * 271.83409 * 9 7 6 40 40 H 1.09002 * 109.88192 * 218.47989 * 10 9 7 41 41 H 1.09000 * 109.88128 * 97.46841 * 10 9 7 42 42 H 0.96990 * 120.00509 * 359.97438 * 16 14 12 43 43 H 1.09001 * 109.47353 * 299.99387 * 17 16 14 44 44 H 1.08998 * 109.47476 * 59.99783 * 17 16 14 45 45 H 1.09005 * 109.47215 * 300.00010 * 18 17 16 46 46 H 1.09001 * 109.47524 * 59.99645 * 18 17 16 47 47 H 1.09005 * 109.46860 * 300.00268 * 19 18 17 48 48 H 1.09001 * 109.46921 * 59.99316 * 19 18 17 49 49 H 0.96995 * 119.99759 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.36956 * 142.96999 * 28 11 10 51 51 H 1.09001 * 110.36709 * 265.18192 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5457 1.2198 7 6 3.7194 4.9346 1.3213 8 1 3.6953 5.4116 0.3415 9 6 2.7658 5.6563 2.3137 10 6 3.6203 6.8422 2.8088 11 7 5.0305 6.4912 2.5863 12 6 6.0892 7.2766 2.8671 13 8 7.2142 6.8823 2.6403 14 6 5.8776 8.6330 3.4578 15 8 4.7525 9.0273 3.6842 16 7 6.9363 9.4186 3.7380 17 6 6.7287 10.7484 4.3166 18 6 8.0828 11.4261 4.5361 19 6 7.8662 12.8152 5.1397 20 6 9.1999 13.4823 5.3564 21 1 10.1110 12.9673 5.0900 22 6 9.2570 14.7507 5.8940 23 7 8.1475 15.3781 6.2181 24 14 10.9102 15.5780 6.1621 25 1 11.2826 16.3454 4.9466 26 1 10.8196 16.5010 7.3219 27 1 11.9427 14.5451 6.4310 28 6 5.0949 5.1382 2.0044 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 3.3493 3.4411 -0.8430 37 1 4.9082 3.0253 -0.0912 38 1 2.5022 4.9986 3.1419 39 1 1.8712 6.0124 1.8027 40 1 3.4429 7.0089 3.8713 41 1 3.3688 7.7410 2.2457 42 1 7.8355 9.1035 3.5568 43 1 6.1267 11.3508 3.6362 44 1 6.2117 10.6527 5.2713 45 1 8.6845 10.8236 5.2167 46 1 8.6003 11.5218 3.5815 47 1 7.2646 13.4174 4.4587 48 1 7.3485 12.7199 6.0942 49 1 8.1877 16.2703 6.5966 50 1 5.8965 5.0796 1.2681 51 1 5.2450 4.3951 2.7876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258149218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:23 Heat of formation + Delta-G solvation = -169.895452 kcal Electronic energy + Delta-G solvation = -28823.207813 eV Core-core repulsion = 24529.733762 eV Total energy + Delta-G solvation = -4293.474051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.87844 -39.44833 -38.62677 -38.04149 -36.76765 -35.52928 -33.35889 -32.45822 -31.36313 -31.23970 -29.65066 -28.93769 -27.20191 -25.14787 -23.50170 -23.26602 -23.00025 -21.99776 -21.51821 -20.76028 -19.63676 -17.96999 -17.87047 -17.29175 -16.96597 -16.55525 -16.39265 -16.03873 -15.67556 -15.49552 -15.35235 -15.00456 -14.49805 -14.43966 -14.19047 -14.08668 -13.88002 -13.62985 -13.39534 -13.07312 -13.01327 -12.76067 -12.33063 -12.27704 -12.08025 -11.94748 -11.86972 -11.80441 -11.75301 -11.49059 -11.40170 -11.06281 -10.91484 -10.76448 -10.60554 -10.14888 -10.09909 -9.90635 -9.74150 -9.35739 -9.13482 -9.10906 -8.92275 -8.38176 -6.03072 -4.06065 1.40525 2.12261 3.04352 3.15459 3.20497 3.30952 3.37373 3.40448 3.50078 4.03040 4.18671 4.41440 4.44277 4.49187 4.53302 4.56407 4.63702 4.72764 4.75820 4.86161 4.90899 4.92249 5.01904 5.13746 5.22965 5.27873 5.33033 5.39315 5.43439 5.49747 5.56283 5.58999 5.65003 5.68641 5.72281 5.82880 6.07490 6.26889 6.53599 6.63845 6.69844 6.75102 6.91117 6.94703 7.27984 7.61252 7.67236 7.72893 7.95299 8.04796 8.36628 9.00449 9.58391 11.08252 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.001335 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.520203 B =20972.651208 C =21452.510844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.064 3.936 5 C 0.060 3.940 6 O -0.360 6.360 7 C 0.076 3.924 8 H 0.082 0.918 9 C -0.128 4.128 10 C 0.108 3.892 11 N -0.592 5.592 12 C 0.523 3.477 13 O -0.521 6.521 14 C 0.503 3.497 15 O -0.521 6.521 16 N -0.691 5.691 17 C 0.115 3.885 18 C -0.123 4.123 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.083 3.917 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.083 0.917 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -31.311 -14.208 37.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.016 4.016 6 O -0.278 6.278 7 C 0.017 3.983 8 H 0.100 0.900 9 C -0.166 4.166 10 C -0.014 4.014 11 N -0.329 5.329 12 C 0.306 3.694 13 O -0.397 6.397 14 C 0.283 3.717 15 O -0.397 6.397 16 N -0.343 5.343 17 C -0.007 4.007 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.039 4.039 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.101 0.899 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.364 -30.943 -13.911 36.842 hybrid contribution 1.663 0.263 -0.098 1.686 sum -12.701 -30.680 -14.010 36.040 Atomic orbital electron populations 1.21738 0.93618 1.02239 1.03294 1.22467 0.95805 0.83759 0.99970 1.87965 1.20434 1.26332 1.95400 1.22511 0.82304 0.95410 1.01028 1.22635 0.98660 0.92729 0.87602 1.88003 1.79929 1.21738 1.38168 1.23270 0.93397 0.82666 0.99015 0.90024 1.22845 0.97975 0.96238 0.99515 1.22226 0.78444 0.97663 1.03059 1.48042 1.07123 1.16326 1.61375 1.20090 0.83846 0.85927 0.79489 1.90762 1.22378 1.74314 1.52243 1.19842 0.85817 0.85598 0.80463 1.90748 1.22765 1.74051 1.52180 1.46059 1.09370 1.17481 1.61417 1.21843 1.00431 0.80089 0.98364 1.21931 0.93298 0.99654 1.01211 1.19029 0.97451 0.88766 0.96055 1.21203 0.92708 1.00492 1.41734 0.92578 1.25019 0.96468 0.97377 0.95510 1.69965 1.26598 1.13576 1.43180 0.86577 0.84169 0.79399 0.77762 1.20648 1.21192 1.19857 1.22785 0.98737 0.83752 0.98673 0.91124 0.91672 0.91869 0.93540 0.93345 0.91731 0.92277 0.92045 0.91424 0.89226 0.88975 0.89661 0.89736 0.75344 0.91080 0.91077 0.92422 0.92440 0.96205 0.96191 0.92918 0.89910 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.34 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.38 -3.07 10.31 -40.08 -0.41 -3.49 16 4 C 0.06 0.37 6.32 37.16 0.23 0.61 16 5 C 0.06 0.37 6.20 37.16 0.23 0.60 16 6 O -0.36 -2.99 10.12 -40.08 -0.41 -3.39 16 7 C 0.08 0.57 3.49 -24.44 -0.09 0.48 16 8 H 0.08 0.54 7.90 -51.93 -0.41 0.13 16 9 C -0.13 -0.93 6.71 -24.76 -0.17 -1.10 16 10 C 0.11 1.04 5.48 -3.07 -0.02 1.02 16 11 N -0.59 -6.72 3.33 -171.02 -0.57 -7.29 16 12 C 0.52 7.31 7.91 -11.58 -0.09 7.22 16 13 O -0.52 -8.19 16.73 5.50 0.09 -8.09 16 14 C 0.50 7.63 7.86 -11.58 -0.09 7.54 16 15 O -0.52 -8.63 14.12 5.49 0.08 -8.55 16 16 N -0.69 -10.48 5.55 -60.73 -0.34 -10.81 16 17 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 18 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 19 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 20 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 24 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.08 0.76 6.64 -2.53 -0.02 0.74 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 41 H 0.08 0.85 7.57 -51.93 -0.39 0.46 16 42 H 0.41 5.73 7.94 -40.82 -0.32 5.40 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 51 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 424.07 15.07 6.39 6.39 Total: -1.00 -33.36 424.07 -8.63 -41.99 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -9.09 Total: -1.17 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.09 Total: 3.88 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.17 Total: -44.02 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.65 Total: -23.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.36 -8.63 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258149218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.910 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds