Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47147 * 2 1 4 4 C 1.42899 * 114.00115 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47525 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47032 * 64.99609 * 5 4 3 7 7 C 1.42900 * 114.00253 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.88444 * 32.42654 * 7 6 5 9 9 C 1.55405 * 111.03994 * 156.23142 * 7 6 5 10 10 C 1.54325 * 102.82616 * 153.47156 * 9 7 6 11 11 N 1.47018 * 107.40412 * 337.97548 * 10 9 7 12 12 C 1.34777 * 125.64981 * 178.82520 * 11 10 9 13 13 O 1.21346 * 120.00030 * 180.02562 * 12 11 10 14 14 C 1.49450 * 119.99901 * 0.03117 * 12 11 10 15 15 O 1.21353 * 119.99750 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99901 * 180.02562 * 14 12 11 17 17 C 1.46504 * 119.99545 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.46973 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47636 * 179.97438 * 18 17 16 20 20 C 1.50692 * 109.47524 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00194 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00241 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99712 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47206 * 90.00097 * 24 22 20 26 26 H 1.48501 * 109.47089 * 210.00111 * 24 22 20 27 27 H 1.48501 * 109.46975 * 330.00094 * 24 22 20 28 28 C 1.47426 * 108.70517 * 358.86539 * 11 10 9 29 29 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46964 * 300.00490 * 1 2 3 31 31 H 1.08998 * 109.47134 * 60.00410 * 1 2 3 32 32 H 1.08996 * 109.46964 * 239.99510 * 2 1 3 33 33 H 1.09005 * 109.46917 * 119.99251 * 2 1 3 34 34 H 1.09007 * 109.47301 * 59.99903 * 4 3 2 35 35 H 1.08996 * 109.47115 * 299.99577 * 4 3 2 36 36 H 1.09002 * 109.46744 * 305.00292 * 5 4 3 37 37 H 1.08996 * 109.47076 * 185.00204 * 5 4 3 38 38 H 1.09000 * 110.69068 * 35.18415 * 9 7 6 39 39 H 1.09002 * 110.85092 * 271.83409 * 9 7 6 40 40 H 1.09002 * 109.88192 * 218.47989 * 10 9 7 41 41 H 1.09000 * 109.88128 * 97.46841 * 10 9 7 42 42 H 0.96990 * 120.00509 * 359.97438 * 16 14 12 43 43 H 1.09001 * 109.47353 * 299.99387 * 17 16 14 44 44 H 1.08998 * 109.47476 * 59.99783 * 17 16 14 45 45 H 1.09005 * 109.47215 * 300.00010 * 18 17 16 46 46 H 1.09001 * 109.47524 * 59.99645 * 18 17 16 47 47 H 1.09005 * 109.46860 * 300.00268 * 19 18 17 48 48 H 1.09001 * 109.46921 * 59.99316 * 19 18 17 49 49 H 0.96995 * 119.99759 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.36956 * 142.96999 * 28 11 10 51 51 H 1.09001 * 110.36709 * 265.18192 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5457 1.2198 7 6 3.7194 4.9346 1.3213 8 1 3.6953 5.4116 0.3415 9 6 2.7658 5.6563 2.3137 10 6 3.6203 6.8422 2.8088 11 7 5.0305 6.4912 2.5863 12 6 6.0892 7.2766 2.8671 13 8 7.2142 6.8823 2.6403 14 6 5.8776 8.6330 3.4578 15 8 4.7525 9.0273 3.6842 16 7 6.9363 9.4186 3.7380 17 6 6.7287 10.7484 4.3166 18 6 8.0828 11.4261 4.5361 19 6 7.8662 12.8152 5.1397 20 6 9.1999 13.4823 5.3564 21 1 10.1110 12.9673 5.0900 22 6 9.2570 14.7507 5.8940 23 7 8.1475 15.3781 6.2181 24 14 10.9102 15.5780 6.1621 25 1 11.2826 16.3454 4.9466 26 1 10.8196 16.5010 7.3219 27 1 11.9427 14.5451 6.4310 28 6 5.0949 5.1382 2.0044 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 3.3493 3.4411 -0.8430 37 1 4.9082 3.0253 -0.0912 38 1 2.5022 4.9986 3.1419 39 1 1.8712 6.0124 1.8027 40 1 3.4429 7.0089 3.8713 41 1 3.3688 7.7410 2.2457 42 1 7.8355 9.1035 3.5568 43 1 6.1267 11.3508 3.6362 44 1 6.2117 10.6527 5.2713 45 1 8.6845 10.8236 5.2167 46 1 8.6003 11.5218 3.5815 47 1 7.2646 13.4174 4.4587 48 1 7.3485 12.7199 6.0942 49 1 8.1877 16.2703 6.5966 50 1 5.8965 5.0796 1.2681 51 1 5.2450 4.3951 2.7876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258149218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = -192.948418 kcal Electronic energy + Delta-G solvation = -28824.207465 eV Core-core repulsion = 24529.733762 eV Total energy + Delta-G solvation = -4294.473703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93917 -40.29623 -39.43317 -38.81206 -37.58523 -36.95433 -35.23106 -33.08716 -32.94398 -32.03459 -30.23723 -29.65122 -28.87801 -26.43018 -24.87941 -23.66133 -23.59479 -23.07923 -22.38667 -22.23049 -20.83772 -19.00838 -18.54050 -18.46269 -18.03690 -17.77998 -17.32654 -16.88303 -16.77433 -16.40989 -16.31034 -16.21666 -15.88729 -15.51317 -15.26384 -14.83231 -14.74846 -14.39808 -14.27691 -14.17446 -13.88207 -13.77917 -13.54244 -13.50317 -13.27698 -13.03983 -12.76457 -12.75723 -12.56716 -12.49518 -12.40365 -12.31035 -12.15285 -11.86862 -11.70713 -11.66459 -11.55435 -11.23361 -10.79662 -10.58599 -10.54485 -10.53807 -10.33115 -9.94167 -8.19380 -6.30257 0.24705 1.08767 1.42377 1.43089 1.54220 2.02975 2.25789 2.42782 2.66551 2.76505 3.14775 3.18547 3.46759 3.51695 3.93004 4.06275 4.07922 4.13634 4.18032 4.19328 4.20917 4.26598 4.33660 4.48470 4.51163 4.52334 4.55887 4.59841 4.63283 4.75933 4.78741 4.84364 4.89516 4.91467 4.92180 5.03626 5.05167 5.09730 5.14850 5.23127 5.28522 5.51659 5.70831 5.84576 5.87909 6.11584 6.14794 6.23927 6.31439 6.55367 6.85155 6.86772 7.39268 8.92590 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.001335 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.520203 B =20972.651208 C =21452.510844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.409 6.409 4 C 0.060 3.940 5 C 0.054 3.946 6 O -0.376 6.376 7 C 0.083 3.917 8 H 0.095 0.905 9 C -0.119 4.119 10 C 0.107 3.893 11 N -0.587 5.587 12 C 0.525 3.475 13 O -0.542 6.542 14 C 0.504 3.496 15 O -0.537 6.537 16 N -0.687 5.687 17 C 0.129 3.871 18 C -0.106 4.106 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.263 1.263 28 C 0.081 3.919 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.418 0.582 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.067 0.933 47 H -0.003 1.003 48 H -0.004 1.004 49 H 0.263 0.737 50 H 0.086 0.914 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -32.846 -15.273 38.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.329 6.329 4 C -0.016 4.016 5 C -0.022 4.022 6 O -0.294 6.294 7 C 0.024 3.976 8 H 0.113 0.887 9 C -0.157 4.157 10 C -0.015 4.015 11 N -0.322 5.322 12 C 0.308 3.692 13 O -0.420 6.420 14 C 0.284 3.716 15 O -0.414 6.414 16 N -0.339 5.339 17 C 0.006 3.994 18 C -0.144 4.144 19 C -0.012 4.012 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.789 3.211 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.187 1.187 28 C -0.041 4.041 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.758 -32.522 -14.994 38.363 hybrid contribution 1.391 0.675 0.219 1.561 sum -12.367 -31.847 -14.774 37.221 Atomic orbital electron populations 1.21762 0.93384 1.03179 1.02516 1.22621 0.96107 0.83034 1.00798 1.87926 1.21659 1.27752 1.95597 1.22656 0.81512 0.95446 1.01999 1.22834 0.99729 0.92792 0.86836 1.87990 1.80105 1.21887 1.39405 1.23214 0.92143 0.82791 0.99407 0.88737 1.22810 0.98036 0.95163 0.99657 1.22311 0.77821 0.98718 1.02671 1.48135 1.07241 1.16782 1.60004 1.19737 0.84176 0.85553 0.79778 1.90752 1.23132 1.74594 1.53559 1.20098 0.85376 0.86096 0.80011 1.90741 1.23349 1.74542 1.52782 1.45870 1.09989 1.16711 1.61344 1.21478 0.98810 0.80953 0.98150 1.21645 0.94739 0.96693 1.01344 1.18926 0.95953 0.91610 0.94736 1.21682 0.93919 1.01039 1.41485 0.91827 1.25956 1.00361 0.98219 0.95187 1.70097 1.29051 1.14050 1.44140 0.85460 0.79494 0.78382 0.77798 1.19840 1.20916 1.18671 1.22950 1.00055 0.82275 0.98797 0.89365 0.92746 0.92291 0.92171 0.92990 0.89610 0.92392 0.91696 0.89756 0.89157 0.87243 0.90466 0.90058 0.74447 0.91585 0.91688 0.91543 0.91469 0.98484 0.98522 0.92783 0.89603 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.05 0.50 6.66 71.98 0.48 0.98 16 3 O -0.41 -6.14 10.31 -144.34 -1.49 -7.63 16 4 C 0.06 0.61 6.32 71.98 0.45 1.06 16 5 C 0.05 0.56 6.20 71.98 0.45 1.00 16 6 O -0.38 -5.60 10.12 -144.34 -1.46 -7.06 16 7 C 0.08 1.11 3.49 32.08 0.11 1.22 16 8 H 0.09 1.03 7.90 -2.39 -0.02 1.01 16 9 C -0.12 -1.54 6.71 31.87 0.21 -1.33 16 10 C 0.11 1.95 5.48 86.73 0.48 2.42 16 11 N -0.59 -12.73 3.33 -813.36 -2.71 -15.43 16 12 C 0.52 14.27 7.91 87.27 0.69 14.96 16 13 O -0.54 -16.59 16.73 -3.23 -0.05 -16.64 16 14 C 0.50 15.04 7.86 87.27 0.69 15.72 16 15 O -0.54 -17.64 14.12 -3.26 -0.05 -17.69 16 16 N -0.69 -20.35 5.55 -464.40 -2.58 -22.93 16 17 C 0.13 4.39 5.67 86.38 0.49 4.88 16 18 C -0.11 -4.09 5.27 30.59 0.16 -3.93 16 19 C 0.03 1.30 4.97 29.84 0.15 1.45 16 20 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.00 0.04 5.46 84.65 0.46 0.50 16 23 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 24 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.08 1.36 6.64 86.86 0.58 1.94 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.56 7.70 -2.39 -0.02 1.54 16 41 H 0.08 1.57 7.57 -2.39 -0.02 1.55 16 42 H 0.42 11.23 7.94 -92.72 -0.74 10.49 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 51 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -71.21 424.07 0.52 -70.69 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.17 Total: 16.77 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.37 Total: 10.25 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -5.00 Total: -94.54 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -3.05 Total: -49.02 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.21 0.52 -70.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258149218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.254 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds