Wall clock time and date at job start Wed Apr 1 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47102 * 2 1 4 4 C 1.42904 * 114.00086 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.37067 * 30.73269 * 4 3 2 6 6 C 1.54005 * 110.32380 * 268.54702 * 4 3 2 7 7 N 1.47485 * 107.24392 * 242.31459 * 6 4 3 8 8 C 1.34786 * 127.03052 * 154.61643 * 7 6 4 9 9 O 1.21282 * 119.99889 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.00123 * 0.02562 * 8 7 6 11 11 O 1.42897 * 109.47287 * 180.02562 * 10 8 7 12 12 C 1.42902 * 114.00167 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.45733 * 27.38789 * 12 11 10 14 14 C 1.54506 * 110.51292 * 150.00009 * 12 11 10 15 15 C 1.54486 * 104.06350 * 118.64272 * 14 12 11 16 16 O 1.44422 * 104.80175 * 23.97773 * 15 14 12 17 17 C 1.44426 * 105.27685 * 319.48793 * 16 15 14 18 18 C 1.48377 * 105.79701 * 334.78511 * 7 6 4 19 19 C 1.54616 * 110.32746 * 152.92610 * 4 3 2 20 20 H 1.09002 * 110.74101 * 22.40505 * 19 4 3 21 21 C 1.52993 * 110.73834 * 259.25741 * 19 4 3 22 22 N 1.46504 * 109.47141 * 174.99819 * 21 19 4 23 23 C 1.36944 * 120.00094 * 179.97438 * 22 21 19 24 24 H 1.07999 * 119.99916 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99746 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00311 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99904 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47032 * 89.99280 * 27 25 23 29 29 H 1.48493 * 109.47216 * 209.99567 * 27 25 23 30 30 H 1.48505 * 109.46679 * 330.00040 * 27 25 23 31 31 H 1.09006 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47187 * 299.99786 * 1 2 3 33 33 H 1.09004 * 109.47222 * 60.00374 * 1 2 3 34 34 H 1.09001 * 109.46793 * 240.00107 * 2 1 3 35 35 H 1.09000 * 109.47022 * 120.00089 * 2 1 3 36 36 H 1.09002 * 109.91501 * 1.77436 * 6 4 3 37 37 H 1.08999 * 109.90987 * 122.86047 * 6 4 3 38 38 H 1.09006 * 109.47325 * 300.00506 * 10 8 7 39 39 H 1.09007 * 109.47058 * 59.99864 * 10 8 7 40 40 H 1.09003 * 110.50785 * 237.28477 * 14 12 11 41 41 H 1.08998 * 110.50985 * 359.97438 * 14 12 11 42 42 H 1.08993 * 110.37109 * 142.81136 * 15 14 12 43 43 H 1.09000 * 110.37144 * 265.14831 * 15 14 12 44 44 H 1.09001 * 110.37279 * 281.68317 * 17 16 15 45 45 H 1.08999 * 110.37514 * 159.34461 * 17 16 15 46 46 H 1.09005 * 110.51886 * 280.62106 * 18 7 6 47 47 H 1.09006 * 110.83140 * 157.65823 * 18 7 6 48 48 H 1.08999 * 109.47449 * 295.00092 * 21 19 4 49 49 H 1.09004 * 109.47362 * 55.00114 * 21 19 4 50 50 H 0.96997 * 120.00159 * 0.02562 * 22 21 19 51 51 H 0.96995 * 119.99692 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8782 0.6146 -0.5231 6 6 3.9618 1.5386 1.4429 7 7 4.6262 2.8467 1.5938 8 6 4.8079 3.5378 2.7367 9 8 5.3751 4.6095 2.7135 10 6 4.3062 2.9788 4.0431 11 8 4.6158 3.8886 5.1007 12 6 4.1813 3.4509 6.3898 13 1 4.1396 2.3624 6.4285 14 6 5.1179 3.9964 7.4909 15 6 4.1956 4.8713 8.3687 16 8 2.8686 4.3465 8.1468 17 6 2.8039 4.0607 6.7326 18 6 5.0486 3.2451 0.2284 19 6 3.8640 2.7896 -0.6605 20 1 3.0543 3.5185 -0.6278 21 6 4.3217 2.5553 -2.1014 22 7 4.6114 3.8429 -2.7373 23 6 5.0407 3.8836 -4.0370 24 1 5.1652 2.9664 -4.5935 25 6 5.3157 5.1036 -4.6392 26 7 5.1635 6.2214 -3.9612 27 14 5.9006 5.1592 -6.4125 28 1 4.7276 5.2582 -7.3177 29 1 6.7777 6.3414 -6.6076 30 1 6.6613 3.9218 -6.7217 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1342 1.4590 2.1478 37 1 4.6779 0.7360 1.6192 38 1 3.2265 2.8398 3.9882 39 1 4.7866 2.0195 4.2363 40 1 5.5374 3.1776 8.0755 41 1 5.9126 4.5996 7.0519 42 1 4.4703 4.7767 9.4192 43 1 4.2491 5.9135 8.0539 44 1 2.6440 4.9786 6.1669 45 1 2.0095 3.3435 6.5263 46 1 5.9641 2.7259 -0.0551 47 1 5.1846 4.3247 0.1643 48 1 5.2210 1.9395 -2.1015 49 1 3.5327 2.0461 -2.6550 50 1 4.5000 4.6667 -2.2374 51 1 5.3553 7.0739 -4.3822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263966691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:22 Heat of formation + Delta-G solvation = -147.827199 kcal Electronic energy + Delta-G solvation = -30474.219764 eV Core-core repulsion = 26181.702664 eV Total energy + Delta-G solvation = -4292.517100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.38184 -39.87045 -38.62343 -37.23459 -36.45619 -34.69616 -32.39460 -31.77079 -31.35343 -30.00561 -29.19761 -28.41881 -27.82267 -25.09018 -23.71681 -23.30151 -22.90185 -21.90334 -21.57487 -20.17868 -19.58550 -17.76570 -17.49175 -17.14371 -16.94611 -16.43640 -16.34732 -16.13654 -15.53687 -15.45155 -15.08267 -14.89232 -14.49951 -14.40997 -13.98434 -13.67298 -13.42381 -13.30421 -13.12895 -13.07311 -12.83515 -12.63379 -12.45589 -12.40149 -12.07693 -12.00727 -11.77563 -11.68857 -11.48044 -11.25612 -11.16373 -11.05148 -10.78290 -10.73807 -10.44857 -10.31144 -10.09668 -9.93148 -9.86872 -9.73268 -9.59374 -8.88947 -8.67735 -6.93544 -5.75144 -3.05221 2.45053 2.56441 3.35598 3.44589 3.48745 3.51504 3.55055 3.73439 4.09531 4.26305 4.39007 4.42853 4.49535 4.58596 4.72587 4.78566 4.80292 4.83754 4.89426 4.90891 4.96720 5.04909 5.19171 5.25462 5.26999 5.28468 5.33108 5.34982 5.38238 5.48322 5.54403 5.56958 5.60763 5.65127 5.74262 5.81936 5.96039 6.03922 6.10429 6.23147 6.29858 6.31460 6.65578 6.71323 6.74547 7.17759 7.46904 7.69686 8.12888 8.42513 9.53880 10.09902 10.44365 11.47352 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002402 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.998190 B =11655.452370 C =13634.837693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.371 6.371 4 C 0.084 3.916 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.619 5.619 8 C 0.532 3.468 9 O -0.514 6.514 10 C 0.048 3.952 11 O -0.348 6.348 12 C 0.054 3.946 13 H 0.079 0.921 14 C -0.156 4.156 15 C 0.045 3.955 16 O -0.373 6.373 17 C 0.023 3.977 18 C 0.118 3.882 19 C -0.102 4.102 20 H 0.096 0.904 21 C 0.166 3.834 22 N -0.731 5.731 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.930 5.930 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.022 0.978 49 H 0.026 0.974 50 H 0.385 0.615 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -14.907 22.366 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.290 6.290 4 C 0.024 3.976 5 H 0.101 0.899 6 C -0.047 4.047 7 N -0.356 5.356 8 C 0.319 3.681 9 O -0.388 6.388 10 C -0.032 4.032 11 O -0.266 6.266 12 C -0.005 4.005 13 H 0.097 0.903 14 C -0.193 4.193 15 C -0.032 4.032 16 O -0.291 6.291 17 C -0.055 4.055 18 C -0.003 4.003 19 C -0.122 4.122 20 H 0.115 0.885 21 C 0.038 3.962 22 N -0.376 5.376 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.578 5.578 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.039 0.961 49 H 0.043 0.957 50 H 0.219 0.781 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.428 -13.994 22.436 26.993 hybrid contribution 0.395 -0.254 -0.999 1.104 sum -5.034 -14.248 21.436 26.227 Atomic orbital electron populations 1.21740 0.93818 1.02044 1.03298 1.22533 0.95663 0.84112 0.99990 1.88040 1.20142 1.26089 1.94701 1.23022 0.81519 0.99543 0.93473 0.89906 1.22698 0.97307 0.85692 0.98968 1.48727 1.58369 1.21019 1.07499 1.19703 0.80069 0.84688 0.83616 1.90778 1.41400 1.20860 1.85751 1.22266 1.00730 0.93266 0.86918 1.88102 1.80038 1.44408 1.14038 1.23582 0.94088 0.98984 0.83826 0.90266 1.23035 0.99279 1.01083 0.95942 1.23436 0.81813 0.97462 1.00452 1.89140 1.32190 1.84210 1.23594 1.23975 0.97392 1.01149 0.82958 1.22641 0.96732 1.03016 0.77912 1.22607 0.97927 0.95725 0.95909 0.88525 1.20606 0.96848 0.90428 0.88295 1.42343 1.80795 1.02228 1.12227 1.19182 1.37031 0.92614 0.88538 0.91163 1.24762 1.02371 0.95389 0.98337 1.69664 1.54973 0.96916 1.36278 0.86189 0.78175 0.76943 0.84845 1.21721 1.21754 1.20778 0.91288 0.92013 0.91586 0.93041 0.93653 0.90198 0.90867 0.90181 0.90227 0.89649 0.88631 0.88723 0.91652 0.90708 0.88675 0.90280 0.88605 0.96066 0.95660 0.78100 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.48 6.51 37.16 0.24 0.72 16 3 O -0.37 -4.61 9.94 -35.23 -0.35 -4.97 16 4 C 0.08 1.00 3.03 -25.36 -0.08 0.92 16 5 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 6 C 0.08 0.78 6.56 -2.98 -0.02 0.76 16 7 N -0.62 -8.45 3.30 -169.54 -0.56 -9.01 16 8 C 0.53 7.93 7.97 -10.98 -0.09 7.84 16 9 O -0.51 -10.20 16.73 -14.35 -0.24 -10.44 16 10 C 0.05 0.50 5.33 36.00 0.19 0.69 16 11 O -0.35 -4.17 9.51 -55.14 -0.52 -4.70 16 12 C 0.05 0.46 3.61 -25.16 -0.09 0.37 16 13 H 0.08 0.51 7.82 -51.93 -0.41 0.11 16 14 C -0.16 -1.19 6.90 -25.16 -0.17 -1.36 16 15 C 0.05 0.35 7.63 37.94 0.29 0.64 16 16 O -0.37 -3.73 11.65 -35.23 -0.41 -4.14 16 17 C 0.02 0.20 7.38 37.94 0.28 0.48 16 18 C 0.12 1.89 6.46 -1.98 -0.01 1.88 16 19 C -0.10 -1.62 2.81 -88.75 -0.25 -1.87 16 20 H 0.10 1.74 8.08 -51.93 -0.42 1.32 16 21 C 0.17 3.19 5.58 -4.04 -0.02 3.17 16 22 N -0.73 -18.32 5.52 -59.91 -0.33 -18.65 16 23 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 27 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 39 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.81 8.00 -51.93 -0.42 0.40 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 47 H 0.10 1.83 7.87 -51.93 -0.41 1.42 16 48 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.39 10.30 7.67 -40.82 -0.31 9.99 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -35.67 416.24 -9.05 -44.72 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -9.01 Total: 5.17 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 0.41 Total: 6.04 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.17 Total: -55.42 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.53 Total: -24.24 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.67 -9.05 -44.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263966691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.104 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds